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Your search keyword '"Bricogne, Gérard"' showing total 8 results
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8 results on '"Bricogne, Gérard"'

1. Community recommendations on cryoEM data archiving and validation

Author

Kleywegt, Gerard J., Adams, Paul D., Butcher, Sarah J., Lawson, Cathy, Rohou, Alexis, Rosenthal, Peter B., Subramaniam, Sriram, Topf, Maya, Abbott, Sanja, Baldwin, Philip R., Berrisford, John M., Bricogne, Gérard, Choudhary, Preeti, Croll, Tristan I., Danev, Radostin, Ganesan, Sai J., Grant, Timothy, Gutmanas, Aleksandras, Henderson, Richard, Heymann, J. Bernard, Huiskonen, Juha T., Istrate, Andrei, Kato, Takayuki, Lander, Gabriel C., Lok, Shee-Mei, Ludtke, Steven J., Murshudov, Garib N., Pye, Ryan, Pintilie, Grigore D., Richardson, Jane S., Sachse, Carsten, Salih, Osman, Scheres, Sjors H. W., Schroeder, Gunnar F., Sorzano, Carlos Oscar S., Stagg, Scott M., Wang, Zhe, Warshamanage, Rangana, Westbrook, John D., Winn, Martyn D., Young, Jasmine Y., Burley, Stephen K., Hoch, Jeffrey C., Kurisu, Genji, Morris, Kyle, Patwardhan, Ardan, and Velankar, Sameer

Subjects
Quantitative Biology - Biomolecules
Abstract

In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 45 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and consensus recommendations resulting from the workshop. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations., Comment: Outcomes of a wwPDB/EMDB workshop on cryoEM data management, deposition and validation

Published
2023
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2. Community recommendations on cryoEM data archiving and validation

Author

Kleywegt, Gerard J, Adams, Paul D, Butcher, Sarah J, Lawson, Catherine L, Rohou, Alexis, Rosenthal, Peter B, Subramaniam, Sriram, Topf, Maya, Abbott, Sanja, Baldwin, Philip R, Berrisford, John M, Bricogne, Gérard, Choudhary, Preeti, Croll, Tristan I, Danev, Radostin, Ganesan, Sai J, Grant, Timothy, Gutmanas, Aleksandras, Henderson, Richard, Heymann, J Bernard, Huiskonen, Juha T, Istrate, Andrei, Kato, Takayuki, Lander, Gabriel C, Lok, Shee-Mei, Ludtke, Steven J, Murshudov, Garib N, Pye, Ryan, Pintilie, Grigore D, Richardson, Jane S, Sachse, Carsten, Salih, Osman, Scheres, Sjors HW, Schroeder, Gunnar F, Sorzano, Carlos Oscar S, Stagg, Scott M, Wang, Zhe, Warshamanage, Rangana, Westbrook, John D, Winn, Martyn D, Young, Jasmine Y, Burley, Stephen K, Hoch, Jeffrey C, Kurisu, Genji, Morris, Kyle, Patwardhan, Ardan, and Velankar, Sameer

Subjects
Physical Sciences, Chemical Sciences, Physical Chemistry, Condensed Matter Physics, Data Curation, Cryoelectron Microscopy, cryogenic-specimen electron microscopy, data archiving, validation, quality control, Electron Microscopy Data Bank, Protein Data Bank, single-particle cryoEM, databases, bioinformatics, structure determination, Atomic, Molecular, Nuclear, Particle and Plasma Physics, Physical Chemistry (incl. Structural), Physical chemistry, Condensed matter physics
Abstract

In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.

Published
2024

3. PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology

Author

Westbrook, John D., Young, Jasmine Y., Shao, Chenghua, Feng, Zukang, Guranovic, Vladimir, Lawson, Catherine L., Vallat, Brinda, Adams, Paul D., Berrisford, John M, Bricogne, Gerard, Diederichs, Kay, Joosten, Robbie P., Keller, Peter, Moriarty, Nigel W., Sobolev, Oleg V., Velankar, Sameer, Vonrhein, Clemens, Waterman, David G., Kurisu, Genji, Berman, Helen M., Burley, Stephen K., and Peisach, Ezra

Published
2022
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5. Community recommendations on cryoEM data archiving and validation

Author

Kleywegt, Gerard J., primary, Adams, Paul D., additional, Butcher, Sarah J., additional, Lawson, Catherine L., additional, Rohou, Alexis, additional, Rosenthal, Peter B., additional, Subramaniam, Sriram, additional, Topf, Maya, additional, Abbott, Sanja, additional, Baldwin, Philip R., additional, Berrisford, John M., additional, Bricogne, Gérard, additional, Choudhary, Preeti, additional, Croll, Tristan I., additional, Danev, Radostin, additional, Ganesan, Sai J., additional, Grant, Timothy, additional, Gutmanas, Aleksandras, additional, Henderson, Richard, additional, Heymann, J. Bernard, additional, Huiskonen, Juha T., additional, Istrate, Andrei, additional, Kato, Takayuki, additional, Lander, Gabriel C., additional, Lok, Shee-Mei, additional, Ludtke, Steven J., additional, Murshudov, Garib N., additional, Pye, Ryan, additional, Pintilie, Grigore D., additional, Richardson, Jane S., additional, Sachse, Carsten, additional, Salih, Osman, additional, Scheres, Sjors H. W., additional, Schroeder, Gunnar F., additional, Sorzano, Carlos Oscar S., additional, Stagg, Scott M., additional, Wang, Zhe, additional, Warshamanage, Rangana, additional, Westbrook, John D., additional, Winn, Martyn D., additional, Young, Jasmine Y., additional, Burley, Stephen K., additional, Hoch, Jeffrey C., additional, Kurisu, Genji, additional, Morris, Kyle, additional, Patwardhan, Ardan, additional, and Velankar, Sameer, additional

Published
2024
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6. Community recommendations on cryoEM data archiving and validation

Author

Wellcome Trust, National Science Foundation (US), Department of Energy (US), National Cancer Institute (US), National Institute of Allergy and Infectious Diseases (US), National Institutes of Health (US), National Institute of General Medical Sciences (US), Kleywegt, Gerard J., Adams, Paul D., Butcher, Sarah J., Lawson, Catherine L., Rohou, Alexis, Rosenthal, Peter B., Subramaniam, Sriram, Topf, Maya, Abbott, Sanja, Baldwin, Philip R., Berrisford, John M., Bricogne, Gérard, Choudhary, Preeti, Croll, Tristan I., Danev, Radostin, Ganesan, Sai J., Grant, Timothy, Gutmanas, Aleksandras, Henderson, Richard, Heymann, J. Bernard, Huiskonen, Juha T., Istrate, Andrei, Kato, Takayuki, Lander, Gabriel C., Lok, Shee-Mei, Ludtke, Steven J., Murshudov, Garib N., Pye, Ryan, Pintilie, Grigore D., Richardson, Jane S., Sachse, Carsten, Salih, Osman, Scheres, Sjors H. W., Schroeder, Gunnar F., Sorzano, Carlos Óscar S., Stagg, Scott M., Wang, Zhe, Warshamanage, Rangana, Westbrook, John D., Winn, Martyn D., Young, Jasmine Y., Burley, Stephen K., Hoch, Jeffrey C., Kurisu, Genji, Morris, Kyle, Patwardhan, Ardan, Velankar, Sameer, Wellcome Trust, National Science Foundation (US), Department of Energy (US), National Cancer Institute (US), National Institute of Allergy and Infectious Diseases (US), National Institutes of Health (US), National Institute of General Medical Sciences (US), Kleywegt, Gerard J., Adams, Paul D., Butcher, Sarah J., Lawson, Catherine L., Rohou, Alexis, Rosenthal, Peter B., Subramaniam, Sriram, Topf, Maya, Abbott, Sanja, Baldwin, Philip R., Berrisford, John M., Bricogne, Gérard, Choudhary, Preeti, Croll, Tristan I., Danev, Radostin, Ganesan, Sai J., Grant, Timothy, Gutmanas, Aleksandras, Henderson, Richard, Heymann, J. Bernard, Huiskonen, Juha T., Istrate, Andrei, Kato, Takayuki, Lander, Gabriel C., Lok, Shee-Mei, Ludtke, Steven J., Murshudov, Garib N., Pye, Ryan, Pintilie, Grigore D., Richardson, Jane S., Sachse, Carsten, Salih, Osman, Scheres, Sjors H. W., Schroeder, Gunnar F., Sorzano, Carlos Óscar S., Stagg, Scott M., Wang, Zhe, Warshamanage, Rangana, Westbrook, John D., Winn, Martyn D., Young, Jasmine Y., Burley, Stephen K., Hoch, Jeffrey C., Kurisu, Genji, Morris, Kyle, Patwardhan, Ardan, and Velankar, Sameer

Abstract

In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop’s motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.

Published
2024

8. Community recommendations on cryoEM data archiving and validation: Outcomes of a wwPDB/EMDB workshop on cryoEM data management, deposition and validation.

Author

Kleywegt GJ, Adams PD, Butcher SJ, Lawson CL, Rohou A, Rosenthal PB, Subramaniam S, Topf M, Abbott S, Baldwin PR, Berrisford JM, Bricogne G, Choudhary P, Croll TI, Danev R, Ganesan SJ, Grant T, Gutmanas A, Henderson R, Heymann JB, Huiskonen JT, Istrate A, Kato T, Lander GC, Lok SM, Ludtke SJ, Murshudov GN, Pye R, Pintilie GD, Richardson JS, Sachse C, Salih O, Scheres SHW, Schroeder GF, Sorzano COS, Stagg SM, Wang Z, Warshamanage R, Westbrook JD, Winn MD, Young JY, Burley SK, Hoch JC, Kurisu G, Morris K, Patwardhan A, and Velankar S

Abstract

In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and consensus recommendations resulting from the workshop. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.

Published
2024

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