Michael Doane, Michael Reed, Jody McKerral, Lais Farias Oliveira Lima, Bhavya Papudeshi, Megan Morris, Asha Goodman, Shaili Johri, Taylor Dillon, Abigail Turnlund, Meredith Peterson, Maria Mora, Rafael de la Parra Venegas, Richard Pillans, Christoph Rohner, Simon Pierce, Christine Legaspi, Gonzalo Araujo, Deni Ramirez-Macias, Robert Edwards, and Elizabeth Dinsdale
Microbiomes confer beneficial physiological traits to their host, but microbial diversity is inherently variable, challenging the relationship between microbes and their functional contribution to host health. Here, we compare diversity and architectural complexity of the epidermal microbiome from 74 individual whale sharks (Rhincodon typus) across five aggregations, globally. We hypothesised co-occurrence patterns would occur independently of diversity patterns. Whale shark aggregation was the most important factor discriminating taxonomic diversity patterns. Microbiome network architecture was similar across all aggregations with degree distributions matching Erdos-Renyi graphs. However, networks had greater modularity than expected, indicating definitive microbiome structure. In addition, whale sharks hosted 35 ‘core’ microbiome members supporting the high modularity observed in microbiomes. Therefore, while variability in microbiome diversity is high, network structure and core taxa are inherent characteristics of the microbiome in whale sharks. We suggest host-microbiome and microbe-microbe interactions which drive self-assembly of the microbiome are, in part, the result of emergent functions that support functionally redundant key core microbial members. Teaser Sentence: The skin microbiome of whale sharks has emergent co-occurrences structure despite distinct diversity patterns.