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We present the first local problem that shows a super-constant separation between the classical randomized LOCAL model of distributed computing and its quantum counterpart. By prior work, such a separation was known only for an artificial graph problem with an inherently global definition [Le Gall et al. 2019]. We present a problem that we call iterated GHZ, which is defined using only local constraints. Formally, it is a family of locally checkable labeling problems [Naor and Stockmeyer 1995]; in particular, solutions can be verified with a constant-round distributed algorithm. We show that in graphs of maximum degree $\Delta$, any classical (deterministic or randomized) LOCAL model algorithm will require $\Omega(\Delta)$ rounds to solve the iterated GHZ problem, while the problem can be solved in $1$ round in quantum-LOCAL. We use the round elimination technique to prove that the iterated GHZ problem requires $\Omega(\Delta)$ rounds for classical algorithms. This is the first work that shows that round elimination is indeed able to separate the two models, and this also demonstrates that round elimination cannot be used to prove lower bounds for quantum-LOCAL. To apply round elimination, we introduce a new technique that allows us to discover appropriate problem relaxations in a mechanical way; it turns out that this new technique extends beyond the scope of the iterated GHZ problem and can be used to e.g. reproduce prior results on maximal matchings [FOCS 2019, PODC 2020] in a systematic manner., Comment: 64 pages, 9 figures

Indexing labeled graphs for pattern matching is a central challenge of pangenomics. Equi et al. (Algorithmica, 2022) developed the Elastic Founder Graph ($\mathsf{EFG}$) representing an alignment of $m$ sequences of length $n$, drawn from alphabet $\Sigma$ plus the special gap character: the paths spell the original sequences or their recombination. By enforcing the semi-repeat-free property, the $\mathsf{EFG}$ admits a polynomial-space index for linear-time pattern matching, breaking through the conditional lower bounds on indexing labeled graphs (Equi et al., SOFSEM 2021). In this work we improve the space of the $\mathsf{EFG}$ index answering pattern matching queries in linear time, from linear in the length of all strings spelled by three consecutive node labels, to linear in the size of the edge labels. Then, we develop linear-time construction algorithms optimizing for different metrics: we improve the existing linearithmic construction algorithms to $O(mn)$, by solving the novel exclusive ancestor set problem on trees; we propose, for the simplified gapless setting, an $O(mn)$-time solution minimizing the maximum block height, that we generalize by substituting block height with prefix-aware height. Finally, to show the versatility of the framework, we develop a BWT-based $\mathsf{EFG}$ index and study how to encode and perform document listing queries on a set of paths of the graphs, reporting which paths present a given pattern as a substring. We propose the $\mathsf{EFG}$ framework as an improved and enhanced version of the framework for the gapless setting, along with construction methods that are valid in any setting concerned with the segmentation of aligned sequences., Comment: 47 pages, 10 figures. Extension of conference papers IWOCA 2022 (https://doi.org/10.1007/978-3-031-06678-8_35 , preprint arXiv:2201.06492), CPM 2022 (https://doi.org/10.4230/LIPIcs.CPM.2022.19 ), and of some results from PhD dissertation projects of Massimo Equi (http://urn.fi/URN:ISBN:978-951-51-8217-3 ) and Tuukka Norri (http://urn.fi/URN:ISBN:978-951-51-8215-9 )

Many problems that can be solved in quadratic time have bit-parallel speed-ups with factor $w$, where $w$ is the computer word size. A classic example is computing the edit distance of two strings of length $n$, which can be solved in $O(n^2/w)$ time. In a reasonable classical model of computation, one can assume $w=\Theta(\log n)$, and obtaining significantly better speed-ups is unlikely in the light of conditional lower bounds obtained for such problems. In this paper, we study the connection of bit-parallelism to quantum computation, aiming to see if a bit-parallel algorithm could be converted to a quantum algorithm with better than logarithmic speed-up. We focus on string matching in labeled graphs, the problem of finding an exact occurrence of a string as the label of a path in a graph. This problem admits a quadratic conditional lower bound under a very restricted class of graphs (Equi et al. ICALP 2019), stating that no algorithm in the classical model of computation can solve the problem in time $O(|P||E|^{1-\epsilon})$ or $O(|P|^{1-\epsilon}|E|)$. We show that a simple bit-parallel algorithm on such restricted family of graphs (level DAGs) can indeed be converted into a realistic quantum algorithm that attains subquadratic time complexity $O(|E|\sqrt{|P|})$., Comment: arXiv admin note: text overlap with arXiv:2112.13005 accepted to CPM 2023, 34th Symposium on Combinatorial Pattern Matching