19 results on '"Handley S"'
Search Results
2. Expansion of shellfish aquaculture has no impact on settlement rates
- Author
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Toone, TA, primary, Benjamin, ED, additional, Handley, S, additional, Jeffs, A, additional, and Hillman, JR, additional
- Published
- 2022
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3. Visual outcomes and predictors in optic pathway glioma: a single centre study
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Bowman, R., primary, Walters, B., additional, Smith, V., additional, Prise, K. L., additional, Handley, S. E., additional, Green, K., additional, Mankad, K., additional, O’Hare, P., additional, Dahl, C., additional, Jorgensen, M., additional, Opocher, E., additional, Hargrave, D., additional, and Thompson, D. A., additional
- Published
- 2022
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4. Clozapine-induced gastrointestinal hypomotility: presenting features and outcomes, UK pharmacovigilance reports, 1992–2017
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Handley, S. A., primary, Every-Palmer, S., additional, Ismail, A., additional, and Flanagan, R. J., additional
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- 2022
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5. Single cell, Label free Characterisation of Human Mesenchymal Stromal cell Stemness and Future Growth Potential by Autofluorescence Multispectral Imaging.
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Campbell JM, Habibalahi A, Agha A, Handley S, Knab A, Xu X, Bhargava A, Lei Z, Mackevicius M, Tian Y, Mahbub SB, Anwer AG, Gronthos S, Paton S, Grey ST, Wu L, Gilchrist RB, and Goldys EM
- Subjects
- Humans, Cell Proliferation, Optical Imaging methods, Single-Cell Analysis methods, Cellular Senescence, Antigens, Surface metabolism, Cells, Cultured, Mesenchymal Stem Cells cytology, Mesenchymal Stem Cells metabolism, Cell Differentiation
- Abstract
Aim: To use autofluorescence multispectral imaging (AFMI) to develop a non-invasive assay for the in-depth characterisation of human bone marrow derived mesenchymal stromal cells (hBM-MSCs)., Methods: hBM-MSCs were imaged by AFMI on gridded dishes, stained for endpoints of interest (STRO-1 positivity, alkaline phosphatase, beta galactosidase, DNA content) then relocated and results correlated. Intensity, texture and morphological features were used to characterise the colour distribution of regions of interest, and canonical discriminant analysis was used to separate groups. Additionally, hBM-MSC lines were cultured to arrest, with AFMI images taken after each passage to investigate whether an assay could be developed for growth potential., Results: STRO-1 positivity could be predicted with a receiver operator characteristic area under the curve (AUC) of 0.67. For spontaneous differentiation this was 0.66, for entry to the cell-cycle it was 0.77 and for senescence it was 0.77. Growth potential (population doublings remaining) was estimated with an RMSPE = 2.296. The Mean Absolute Error of the final prediction model indicated that growth potential could be predicted with an error of ± 1.86 doublings remaining., Conclusions: This non-invasive methodology enabled the in-depth characterisation of hBM-MSCs from a single assay. This approach is advantageous for clinical applications as well as research and stands out for the characterisation of both present status as well as future behaviour. The use of data from five MSC lines with heterogenous AFMI profiles supports potential generalisability., Competing Interests: Declarations Consent for Publication All authors give their consent for publication. Ethics Approval This research was reviewed and given ethical approval by the relevant IRB groups as described in the methodology. Consent to Participate Cell lines were from donors who consented for their use for research purposes. Conflict of Interest The authors report no conflicts of interest., (© 2024. The Author(s).)
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- 2024
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6. Label-Free Assessment of Key Biological Autofluorophores: Material Characteristics and Opportunities for Clinical Applications.
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Campbell JM, Gosnell M, Agha A, Handley S, Knab A, Anwer AG, Bhargava A, and Goldys EM
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- Humans, Animals, Fluorescent Dyes chemistry, Optical Imaging methods, Microscopy, Fluorescence methods, Biocompatible Materials chemistry
- Abstract
Autofluorophores are endogenous fluorescent compounds that naturally occur in the intra and extracellular spaces of all tissues and organs. Most have vital biological functions - like the metabolic cofactors NAD(P)H and FAD
+ , as well as the structural protein collagen. Others are considered to be waste products - like lipofuscin and advanced glycation end products - which accumulate with age and are associated with cellular dysfunction. Due to their natural fluorescence, these materials have great utility for enabling non-invasive, label-free assays with direct ties to biological function. Numerous technologies, with different advantages and drawbacks, are applied to their assessment, including fluorescence lifetime imaging microscopy, hyperspectral microscopy, and flow cytometry. Here, the applications of label-free autofluorophore assessment are reviewed for clinical and health-research applications, with specific attention to biomaterials, disease detection, surgical guidance, treatment monitoring, and tissue assessment - fields that greatly benefit from non-invasive methodologies capable of continuous, in vivo characterization., (© 2024 The Author(s). Advanced Materials published by Wiley‐VCH GmbH.)- Published
- 2024
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7. AutoMitoNetwork: Software for analyzing mitochondrial networks in autofluorescence images to enable label-free cell classification.
- Author
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Handley S, Anwer AG, Knab A, Bhargava A, and Goldys EM
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- Humans, Image Processing, Computer-Assisted methods, Optical Imaging methods, Iodoacetic Acid pharmacology, Machine Learning, Support Vector Machine, Retina metabolism, Retina diagnostic imaging, Mitochondria metabolism, Software, Rotenone pharmacology
- Abstract
High-resolution mitochondria imaging in combination with image analysis tools have significantly advanced our understanding of cellular function in health and disease. However, most image analysis tools for mitochondrial studies have been designed to work with fluorescently labeled images only. Additionally, efforts to integrate features describing mitochondrial networks with machine learning techniques for the differentiation of cell types have been limited. Herein, we present AutoMitoNetwork software for image-based assessment of mitochondrial networks in label-free autofluorescence images using a range of interpretable morphological, intensity, and textural features. To demonstrate its utility, we characterized unstained mitochondrial networks in healthy retinal cells and in retinal cells exposed to two types of treatments: rotenone, which directly inhibited mitochondrial respiration and ATP production, and iodoacetic acid, which had a milder impact on mitochondrial networks via the inhibition of anaerobic glycolysis. For both cases, our multi-dimensional feature analysis combined with a support vector machine classifier distinguished between healthy cells and those treated with rotenone or iodoacetic acid. Subtle changes in morphological features were measured including increased fragmentation in the treated retinal cells, pointing to an association with metabolic mechanisms. AutoMitoNetwork opens new options for image-based machine learning in label-free imaging, diagnostics, and mitochondrial disease drug development., (© 2024 The Author(s). Cytometry Part A published by Wiley Periodicals LLC on behalf of International Society for Advancement of Cytometry.)
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- 2024
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8. Towards label-free non-invasive autofluorescence multispectral imaging for melanoma diagnosis.
- Author
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Knab A, Anwer AG, Pedersen B, Handley S, Marupally AG, Habibalahi A, and Goldys EM
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- Humans, Cell Line, Diagnostic Imaging, NAD, Fluorescent Dyes, Melanoma diagnostic imaging
- Abstract
This study focuses on the use of cellular autofluorescence which visualizes the cell metabolism by monitoring endogenous fluorophores including NAD(P)H and flavins. It explores the potential of multispectral imaging of native fluorophores in melanoma diagnostics using excitation wavelengths ranging from 340 nm to 510 nm and emission wavelengths above 391 nm. Cultured immortalized cells are utilized to compare the autofluorescent signatures of two melanoma cell lines to one fibroblast cell line. Feature analysis identifies the most significant and least correlated features for differentiating the cells. The investigation successfully applies this analysis to pre-processed, noise-removed images and original background-corrupted data. Furthermore, the applicability of distinguishing melanomas and healthy fibroblasts based on their autofluorescent characteristics is validated using the same evaluation technique on patient cells. Additionally, the study tentatively maps the detected features to underlying biological processes. This research demonstrates the potential of cellular autofluorescence as a promising tool for melanoma diagnostics., (© 2024 The Authors. Journal of Biophotonics published by Wiley‐VCH GmbH.)
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- 2024
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9. Urine copper by colorimetry.
- Author
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Handley SA and Wanandy T
- Subjects
- Humans, Colorimetry, Copper
- Abstract
Competing Interests: Declaration of conflicting interestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2024
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10. Using PNA A-EQUIP to support the wellbeing and resilience of the public health nursing workforce.
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Handley S
- Subjects
- Humans, Public Health Nursing, Workforce, Resilience, Psychological
- Published
- 2024
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11. The Consequences of Anthropomorphic and Teleological Beliefs in a Global Pandemic.
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Roberts AJ, Handley S, and Polito V
- Abstract
To describe something in terms of its purpose or function is to describe its teleology. Previous studies have found that teleological beliefs are positively related to anthropomorphism, and that anthropomorphism decreases the perceived unpredictability of non-human agents. In the current study, we explore these relationships using the highly salient example of beliefs about the coronavirus pandemic. Results showed that both anthropomorphism and teleology were negatively associated with perceived uncertainty and threat, and positively associated with self-reported behavioural change in response to the pandemic. These findings suggest that highly anthropomorphic and teleological individuals may view coronavirus as agentive and goal-directed. While anthropomorphic and teleological beliefs may facilitate behavioural change in response to the pandemic, we also found that the associated reduction in uncertainty and threat may be detrimental to behavioural change. We discuss the implications of these findings for messaging about global events more broadly.
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- 2024
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12. New consensus definition on defining and measuring care for children with paediatric feeding disorder.
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Elliot C, Hopwood N, Moraby K, Crockett N, Wright S, Vanos K, Furey K, Hammond A, Handley S, Dalby-Payne J, Dadich A, Gottschalk B, Ooi CY, and Woolfenden S
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- Humans, Consensus, Australia, New South Wales, Delphi Technique, Ambulatory Care Facilities, Ambulatory Care
- Abstract
Aim: This study addresses the absence of a definition of care for children with feeding disorders, limited agreement on key performance indicators (KPIs), and the lack of data linked to those KPIs., Methods: Clinicians, consumers and researchers involved in outpatient feeding care in New South Wales (NSW), Australia were invited to participate in a two-Phase study. In Phase 1, a modified Delphi method was used. Two rounds of voting resulted in a new consensus definition of a multidisciplinary paediatric feeding clinic. Three further rounds voting determined relevant KPIs. In Phase 2, the KPIs were piloted prospectively in 10 clinics., Results: Twenty-six clinicians, consumers and researchers participated in Phase 1. Participation across five voting rounds declined from 92% to 60% and a valid definition and KPI set were created. In Phase 2, the definition and KPIs were piloted in 10 clinics over 6 weeks. Data for 110 patients were collected. The final KPI set of 28 measures proposed covers clinical features, patient demographics and medical issues, parent-child interaction and outcome measures., Conclusions: A new definition of a multidisciplinary paediatric feeding clinic is now available, linked to a standardised KPI set covering relevant performance measures. These proved viable in baseline data collection for 10 clinics across NSW. This sets a foundation for further data collection, systematic measurement of care provision and outcomes, and research needed to deliver care improvement for children with paediatric feeding disorder., (© 2024 The Authors. Journal of Paediatrics and Child Health published by John Wiley & Sons Australia, Ltd on behalf of Paediatrics and Child Health Division (The Royal Australasian College of Physicians).)
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- 2024
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13. Pancreatic Islet Viability Assessment Using Hyperspectral Imaging of Autofluorescence.
- Author
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Campbell JM, Walters SN, Habibalahi A, Mahbub SB, Anwer AG, Handley S, Grey ST, and Goldys EM
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- Humans, Animals, Mice, Hyperspectral Imaging, Cytokines, Hypoxia, Islets of Langerhans diagnostic imaging, Insulin-Secreting Cells
- Abstract
Islets prepared for transplantation into type 1 diabetes patients are exposed to compromising intrinsic and extrinsic factors that contribute to early graft failure, necessitating repeated islet infusions for clinical insulin independence. A lack of reliable pre-transplant measures to determine islet viability severely limits the success of islet transplantation and will limit future beta cell replacement strategies. We applied hyperspectral fluorescent microscopy to determine whether we could non-invasively detect islet damage induced by oxidative stress, hypoxia, cytokine injury, and warm ischaemia, and so predict transplant outcomes in a mouse model. In assessing islet spectral signals for NAD(P)H, flavins, collagen-I, and cytochrome-C in intact islets, we distinguished islets compromised by oxidative stress (ROS) (AUC = 1.00), hypoxia (AUC = 0.69), cytokine exposure (AUC = 0.94), and warm ischaemia (AUC = 0.94) compared to islets harvested from pristine anaesthetised heart-beating mouse donors. Significantly, with unsupervised assessment we defined an autofluorescent score for ischaemic islets that accurately predicted the restoration of glucose control in diabetic recipients following transplantation. Similar results were obtained for islet single cell suspensions, suggesting translational utility in the context of emerging beta cell replacement strategies. These data show that the pre-transplant hyperspectral imaging of islet autofluorescence has promise for predicting islet viability and transplant success.
- Published
- 2023
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14. Emerging clinical applications in oncology for non-invasive multi- and hyperspectral imaging of cell and tissue autofluorescence.
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Campbell JM, Habibalahi A, Handley S, Agha A, Mahbub SB, Anwer AG, and Goldys EM
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- Humans, Hyperspectral Imaging, Optical Imaging, Head and Neck Neoplasms, Colonic Neoplasms, Mouth Neoplasms diagnostic imaging
- Abstract
Hyperspectral and multispectral imaging of cell and tissue autofluorescence is an emerging technology in which fluorescence imaging is applied to biological materials across multiple spectral channels. This produces a stack of images where each matched pixel contains information about the sample's spectral properties at that location. This allows precise collection of molecularly specific data from a broad range of native fluorophores. Importantly, complex information, directly reflective of biological status, is collected without staining and tissues can be characterised in situ, without biopsy. For oncology, this can spare the collection of biopsies from sensitive regions and enable accurate tumour mapping. For in vivo tumour analysis, the greatest focus has been on oral cancer, whereas for ex vivo assessment head-and-neck cancers along with colon cancer have been the most studied, followed by oral and eye cancer. This review details the scope and progress of research undertaken towards clinical translation in oncology., (© 2023 The Authors. Journal of Biophotonics published by Wiley-VCH GmbH.)
- Published
- 2023
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15. Verification of the Bühlmann fCAL turbo faecal calprotectin assay on the Binding Site Optilite benchtop analyser.
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Handley SA, Dote NP, Wanandy T, and Prentice L
- Abstract
Objectives: Inflammatory bowel disease (IBD) and irritable bowel syndrome (IBS) are increasingly prevalent disorders. Faecal calprotectin is useful in the differential diagnosis of IBD from IBS and monitoring IBD activity. We verified the Bühlmann fCAL turbo faecal calprotectin assay on the Binding Site, Optilite benchtop analyser., Design: Accuracy, precision, lower limit of quantitation (LLoQ), and linearity of the Bühlmann fCAL turbo faecal calprotectin assay on the Binding Site, Optilite benchtop analyser were ascertained. Comparison with the Bühlmann Quantum Blue fCAL extended and DiaSorin, Liaison calprotectin assays were also undertaken. Difference between assays was evaluated using the Wilcoxon signed-rank test and method comparison was undertaken using Spearman's rank correlation (rs), difference plots and Passing-Bablok regression analyses., Results: The fCAL turbo assay was linear between 25 and 10,000 μg/g, and the LLoQ was 25 μg/g. Intra-, and inter-assay imprecision was <5%. There was a good agreement (rs = 0.96) and no significant bias (3%, p = 0.10) present between the fCAL turbo and Quantum Blue extended assays. Between the fCAL turbo and DiaSorin, liaison assays there was a good agreement (rs = 0.97), but a significant bias (53%, p = <0.01) was present., Conclusions: The fCAL turbo assay performs well on the Binding Site, Optilite benchtop analyser. Calprotectin results are commutable between with Bühlmann fCAL turbo and Quantum Blue fCAL extended assays, but not between Bühlmann and DiaSorin calprotectin assays., Competing Interests: All authors have no financial or personal conflicts of interests to declare., (© 2023 The Authors.)
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- 2023
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16. Clinical applications of non-invasive multi and hyperspectral imaging of cell and tissue autofluorescence beyond oncology.
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Campbell JM, Mahbub SB, Habibalahi A, Agha A, Handley S, Anwer AG, and Goldys EM
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- Hyperspectral Imaging, Optical Imaging
- Abstract
Hyperspectral and multispectral imaging of cell and tissue autofluorescence employs fluorescence imaging, without exogenous fluorophores, across multiple excitation/emission combinations (spectral channels). This produces an image stack where each pixel (matched by location) contains unique information about the sample's spectral properties. Analysis of this data enables access to a rich, molecularly specific data set from a broad range of cell-native fluorophores (autofluorophores) directly reflective of biochemical status, without use of fixation or stains. This non-invasive, non-destructive technology has great potential to spare the collection of biopsies from sensitive regions. As both staining and biopsy may be impossible, or undesirable, depending on the context, this technology great diagnostic potential for clinical decision making. The main research focus has been on the identification of neoplastic tissues. However, advances have been made in diverse applications-including ophthalmology, cardiovascular health, neurology, infection, assisted reproduction technology and organ transplantation., (© 2023 The Authors. Journal of Biophotonics published by Wiley-VCH GmbH.)
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- 2023
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17. The influence of congenital corneal opacity on ERGs obtained using an abbreviated protocol.
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Liasis A, Franco E, Eldib A, Handley S, Scanga HL, and Nischal KK
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- Child, Humans, Infant, Photic Stimulation methods, Retina, Electroretinography methods, Retinal Diseases, Corneal Opacity surgery
- Abstract
Background: Visual electrophysiology may be used to assess visual potential in infants with congenital corneal opacities (CCO). It is essential to recognize confounding effects from these opacities on the flash electroretinogram (ERG)., Methods: ERGs were recorded in awake children employing skin electrodes placed at the lower eyelid crease, both referred to a midfrontal electrode (Fz). A hand-held stimulator was used to present a mixed rod-cone and a dim white stimulus. Recordings were carried out before and after penetrating keratoplasty (PK), when performed., Results: Five infants under the age of 12 months with visually significant CCO were evaluated. In all cases, initial ERGs employing the mixed rod-cone stimulus showed well-defined a-wave with reduced amplitude b-wave. Reduction of stimulus intensity resulted in an increase in the b-wave and normalization of the b:a ratio from 1.1 (range 0.7 to 1.3) to 2.8 (range 1.5 to 4.3). In three cases who underwent PK, the postoperative ERGs recorded with a mixed rod-cone stimulus were normal in waveform shape with a mean b:a ratio of 2.0 (range 1.7 to 3.0)., Conclusion: Selective reduction of the scotopic bright flash ERG b-wave is typically caused by retinal dysfunction that is post-phototransduction or inner retinal. In infants with CCO, scotopic ERGs to bright flashes can show a reduced b:a ratio that improves or normalizes either after PK or stimulus intensity reduction. The study highlights that media opacity can contribute to the generation of an ERG with reduced b-wave in the absence of inner retinal dysfunction.
- Published
- 2023
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18. Logical intuition is not really about logic.
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Ghasemi O, Handley S, Howarth S, Newman IR, and Thompson VA
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- Humans, Judgment, Logic, Problem Solving, Intuition, Thinking
- Abstract
Recent research suggests that reasoners are able to draw simple logical or probabilistic inferences relatively intuitively and automatically, a capacity that has been termed "logical intuition" (see, e.g., De Neys & Pennycook, 2019). A key finding in support of this interpretation is that conclusion validity consistently interferes with judgments of conclusion believability, suggesting that information about logical validity is available quickly enough to interfere with belief judgments. In this study, we examined whether logical intuitions arise because reasoners are sensitive to the logical features of a problem or another structural feature that just happens to align with logical validity. In three experiments ( N = 113, 137, and 254), we presented participants with logical (determinate) and pseudological (indeterminate) arguments and asked them to judge the validity or believability of the conclusion. Logical arguments had determinately valid or invalid conclusions, whereas pseudological arguments were all logically indeterminate, but some were pseudovalid (possible strong arguments) and others pseudoinvalid (possible weak arguments). Experiments 1 and 2 used simple modus ponens and affirming the consequent structures; Experiment 3 used more complex denying the antecedent and modus tollens structures. In all three experiments, we found that pseudovalidity interfered with belief judgments to the same extent as real validity. Altogether, these findings suggest that while people are able to draw inferences intuitively, and these inferences impact belief judgments, they are not logical intuitions. Rather, the intuitive inferences are driven by the processing of more superficial structural features that happen to align with logical validity. (PsycInfo Database Record (c) 2022 APA, all rights reserved).
- Published
- 2022
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19. The bright homunculus in our head: Individual differences in intuitive sensitivity to logical validity.
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Ghasemi O, Handley S, and Howarth S
- Subjects
- Cognition, Humans, Intuition, Problem Solving, Thinking, Individuality, Logic
- Abstract
Classic dual process theories of human reasoning attribute explicit reasoning to effortful, deliberative thinking. According to these models, intuitive processes lack any access to the formal rules of logic and probability and hence rely exclusively on superficial problem features to determine a response. However, in recent years, researchers have demonstrated that reasoners are able to solve simple logical or probabilistic problems relatively automatically, a capability which has been called "logical intuition." In four experiments, we instructed participants to judge the validity (Experiments 1 and 4), likeability (Experiments 1, 2, and 3), and physical brightness (Experiments 2, 3, and 4) of the conclusion to several reasoning problems. Brightness judgements were made by evaluating the font shade brightness of the argument's conclusion. Participants were also asked to complete a range of individual differences measures, drawing on cognitive ability and cognitive style, to evaluate the extent to which "logical intuitions" were linked to measures of deliberative reasoning. The results showed that participants judged the conclusion of logically valid statements to be more valid, more likable, and more physically bright than invalid statements. Participants with higher cognitive ability and unlimited processing time showed greater effects of logical validity in their liking judgements (varied across experiments). However, these effects were absent in the brightness tasks, suggesting that logic effects observed under instructions to judge conclusion brightness are a purer measure of "logical intuition." We discuss the implications of our findings for recent dual process theories of human reasoning.
- Published
- 2022
- Full Text
- View/download PDF
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