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1. Global urban environmental change drives adaptation in white clover

Author

Santangelo, J.S., Ness, R.W., Cohan, B., Fitzpatrick, C.R., Innes, S.G., Koch, S., Miles, L.S., Munim, S., Peres-Neto, P.R., Prashad, C., Tong, A.T., Aguirre, W.E., Akinwole, P.O., Alberti, M., Álvarez, J., Anderson, J.T., Anderson, J.J., Ando, Y., Andrew, N.R., Angeoletto, F., Anstett, D.N., Anstett, J., Aoki-Gonçalves, F., Arietta, A.Z.A., Arroyo, M.T.K., Austen, E.J., Baena-Díaz, F., Barker, C.A., Baylis, H.A., Beliz, J.M., Benitez-Mora, A., Bickford, D., Biedebach, G., Blackburn, G.S., Boehm, M.M.A., Bonser, S.P., Bonte, D., Bragger, J.R., Branquinho, C., Brans, K.I., Bresciano, J.C., Brom, P.D., Bucharova, A., Burt, B., Cahill, J.F., Campbell, K.D., Carlen, E.J., Carmona, D., Castellanos, M.C., Centenaro, G., Chalen, I., Chaves, J.A., Chávez-Pesqueira, M., Chen, X-Y, Chilton, A.M., Chomiak, K.M., Cisneros-Heredia, D.F., Cisse, I.K., Classen, A.T., Comerford, M.S., Fradinger, C.C., Corney, H., Crawford, A.J., Crawford, K.M., Dahirel, M., David, S., De Haan, R., Deacon, N.J., Dean, C., del-Val, E., Deligiannis, E.K., Denney, D., Dettlaff, M.A., DiLeo, M.F., Ding, Y-Y, Domínguez-López, M.E., Dominoni, D.M., Draud, S.L., Dyson, K., Ellers, J., Espinosa, C.I., Essi, L., Falahati-Anbaran, M., Falcão, J.C.F., Fargo, H.T., Fellowes, M.D.E., Fitzpatrick, R.M., Flaherty, L.E., Flood, P. J., Flores, M.F., Fornoni, J., Foster, A.G., Frost, C.J., Fuentes, T.L., Fulkerson, J.R., Gagnon, E., Garbsch, F., Garroway, C.J., Gerstein, A.C., Giasson, M.M., Girdler, E.B., Gkelis, S., Godsoe, W., Golemiec, A.M., Golemiec, M., González-Lagos, C., Gorton, A.J., Gotanda, K.M., Granath, G., Greiner, S., Griffiths, J.S., Grilo, F., Gundel, P.E., Hamilton, B., Hardin, J.M., He, T., Heard, S.B., Henriques, A.F., Hernández-Poveda, M., Hetherington-Rauth, M.C., Hill, S.J., Hochuli, D.F., Hodgins, K.A., Hood, G.R., Hopkins, G.R., Hovanes, K.A., Howard, A.R., Hubbard, S.C., Ibarra-Cerdeña, C.N., Iñiguez-Armijos, C., Jara-Arancio, P., Jarrett, B.J.M., Jeannot, M., Jiménez-Lobato, V., Johnson, M., Johnson, O., Johnson, P.P., Johnson, R., Josephson, M.P., Jung, M.C., Just, M.G., Kahilainen, A., Kailing, O.S., Kariñho-Betancourt, E., Karousou, R., Kirn, L.A., Kirschbaum, A., Laine, A-L, LaMontagne, J.M., Lampei, C., Lara, C., Larson, E.L., Lázaro-Lobo, A., Le, J.H., Leandro, D.S., Lee, C., Lei, Y., León, C.A., Lequerica Tamara, M.E., Levesque, D.C., Liao, W-J, Ljubotina, M., Locke, H., Lockett, M.T., Longo, T.C., Lundholm, J.T., MacGillavry, T., Mackin, C.R., Mahmoud, A.R., Manju, I.A., Mariën, J., Martínez, D.N., Martínez-Bartolomé, M., Meineke, E.K., Mendoza-Arroyo, W., Merritt, T. J.S., Merritt, L.E.L., Migiani, G., Minor, E.S., Mitchell, N., Mohammadi Bazargani, M., Moles, A.T., Monk, J.D., Moore, C.M., Morales-Morales, P.A., Moyers, B.T., Muñoz-Rojas, M., Munshi-South, J., Murphy, S.M., Murúa, M.M., Neila, M., Nikolaidis, O., Njunjić, I., Nosko, P., Núñez-Farfán, J., Ohgushi, T., Olsen, K.M., Opedal, Ø.H., Ornelas, C., Parachnowitsch, A.L., Paratore, A.S., Parody-Merino, A.M., Paule, J., Paulo, O.S., Pena, J.C., Pfeiffer, V.W., Pinho, P., Piot, A., Porth, I.M., Poulos, N., Puentes, A., Qu, J., Quintero-Vallejo, E., Raciti, S.M., Raeymaekers, J.A.M., Raveala, K.M., Rennison, D.J., Ribeiro, M.C., Richardson, J.L., Rivas-Torres, G., Rivera, B. J., Roddy, A.B., Rodriguez-Muñoz, E., Román, J.R., Rossi, L.S., Rowntree, J.K., Ryan, T.J., Salinas, S., Sanders, N.J., Santiago-Rosario, L.Y., Savage, A.M., Scheepens, J.F., Schilthuizen, M., Schneider, A.C., Scholier, T., Scott, J.L., Shaheed, S.A., Shefferson, R.P., Shepard, C.A., Shykoff, J.A., Silveira, G., Smith, A.D., Solis-Gabriel, L., Soro, A., Spellman, K.V., Whitney, K.S., Starke-Ottich, I., Stephan, J.G., Stephens, J.D., Szulc, J., Szulkin, M., Tack, A.J.M., Tamburrino, Í., Tate, T.D., Tergemina, E., Theodorou, P., Thompson, K.A., Threlfall, C.G., Tinghitella, R.M., Toledo-Chelala, L., Tong, X., Uroy, L., Utsumi, S., Vandegehuchte, M.L., VanWallendael, A., Vidal, P.M., Wadgymar, S.M., Wang, A-Y, Wang, N., Warbrick, M.L., Whitney, K.D., Wiesmeier, M., Wiles, J.T., Wu, J., Xirocostas, Z.A., Yan, Z., Yao, J., Yoder, J.B., Yoshida, O., Zhang, J., Zhao, Z., Ziter, C.D., Zuellig, M.P., Zufall, R.A., Zurita, J.E., Zytynska, S.E., Johnson, M.T.J., Santangelo, J.S., Ness, R.W., Cohan, B., Fitzpatrick, C.R., Innes, S.G., Koch, S., Miles, L.S., Munim, S., Peres-Neto, P.R., Prashad, C., Tong, A.T., Aguirre, W.E., Akinwole, P.O., Alberti, M., Álvarez, J., Anderson, J.T., Anderson, J.J., Ando, Y., Andrew, N.R., Angeoletto, F., Anstett, D.N., Anstett, J., Aoki-Gonçalves, F., Arietta, A.Z.A., Arroyo, M.T.K., Austen, E.J., Baena-Díaz, F., Barker, C.A., Baylis, H.A., Beliz, J.M., Benitez-Mora, A., Bickford, D., Biedebach, G., Blackburn, G.S., Boehm, M.M.A., Bonser, S.P., Bonte, D., Bragger, J.R., Branquinho, C., Brans, K.I., Bresciano, J.C., Brom, P.D., Bucharova, A., Burt, B., Cahill, J.F., Campbell, K.D., Carlen, E.J., Carmona, D., Castellanos, M.C., Centenaro, G., Chalen, I., Chaves, J.A., Chávez-Pesqueira, M., Chen, X-Y, Chilton, A.M., Chomiak, K.M., Cisneros-Heredia, D.F., Cisse, I.K., Classen, A.T., Comerford, M.S., Fradinger, C.C., Corney, H., Crawford, A.J., Crawford, K.M., Dahirel, M., David, S., De Haan, R., Deacon, N.J., Dean, C., del-Val, E., Deligiannis, E.K., Denney, D., Dettlaff, M.A., DiLeo, M.F., Ding, Y-Y, Domínguez-López, M.E., Dominoni, D.M., Draud, S.L., Dyson, K., Ellers, J., Espinosa, C.I., Essi, L., Falahati-Anbaran, M., Falcão, J.C.F., Fargo, H.T., Fellowes, M.D.E., Fitzpatrick, R.M., Flaherty, L.E., Flood, P. J., Flores, M.F., Fornoni, J., Foster, A.G., Frost, C.J., Fuentes, T.L., Fulkerson, J.R., Gagnon, E., Garbsch, F., Garroway, C.J., Gerstein, A.C., Giasson, M.M., Girdler, E.B., Gkelis, S., Godsoe, W., Golemiec, A.M., Golemiec, M., González-Lagos, C., Gorton, A.J., Gotanda, K.M., Granath, G., Greiner, S., Griffiths, J.S., Grilo, F., Gundel, P.E., Hamilton, B., Hardin, J.M., He, T., Heard, S.B., Henriques, A.F., Hernández-Poveda, M., Hetherington-Rauth, M.C., Hill, S.J., Hochuli, D.F., Hodgins, K.A., Hood, G.R., Hopkins, G.R., Hovanes, K.A., Howard, A.R., Hubbard, S.C., Ibarra-Cerdeña, C.N., Iñiguez-Armijos, C., Jara-Arancio, P., Jarrett, B.J.M., Jeannot, M., Jiménez-Lobato, V., Johnson, M., Johnson, O., Johnson, P.P., Johnson, R., Josephson, M.P., Jung, M.C., Just, M.G., Kahilainen, A., Kailing, O.S., Kariñho-Betancourt, E., Karousou, R., Kirn, L.A., Kirschbaum, A., Laine, A-L, LaMontagne, J.M., Lampei, C., Lara, C., Larson, E.L., Lázaro-Lobo, A., Le, J.H., Leandro, D.S., Lee, C., Lei, Y., León, C.A., Lequerica Tamara, M.E., Levesque, D.C., Liao, W-J, Ljubotina, M., Locke, H., Lockett, M.T., Longo, T.C., Lundholm, J.T., MacGillavry, T., Mackin, C.R., Mahmoud, A.R., Manju, I.A., Mariën, J., Martínez, D.N., Martínez-Bartolomé, M., Meineke, E.K., Mendoza-Arroyo, W., Merritt, T. J.S., Merritt, L.E.L., Migiani, G., Minor, E.S., Mitchell, N., Mohammadi Bazargani, M., Moles, A.T., Monk, J.D., Moore, C.M., Morales-Morales, P.A., Moyers, B.T., Muñoz-Rojas, M., Munshi-South, J., Murphy, S.M., Murúa, M.M., Neila, M., Nikolaidis, O., Njunjić, I., Nosko, P., Núñez-Farfán, J., Ohgushi, T., Olsen, K.M., Opedal, Ø.H., Ornelas, C., Parachnowitsch, A.L., Paratore, A.S., Parody-Merino, A.M., Paule, J., Paulo, O.S., Pena, J.C., Pfeiffer, V.W., Pinho, P., Piot, A., Porth, I.M., Poulos, N., Puentes, A., Qu, J., Quintero-Vallejo, E., Raciti, S.M., Raeymaekers, J.A.M., Raveala, K.M., Rennison, D.J., Ribeiro, M.C., Richardson, J.L., Rivas-Torres, G., Rivera, B. J., Roddy, A.B., Rodriguez-Muñoz, E., Román, J.R., Rossi, L.S., Rowntree, J.K., Ryan, T.J., Salinas, S., Sanders, N.J., Santiago-Rosario, L.Y., Savage, A.M., Scheepens, J.F., Schilthuizen, M., Schneider, A.C., Scholier, T., Scott, J.L., Shaheed, S.A., Shefferson, R.P., Shepard, C.A., Shykoff, J.A., Silveira, G., Smith, A.D., Solis-Gabriel, L., Soro, A., Spellman, K.V., Whitney, K.S., Starke-Ottich, I., Stephan, J.G., Stephens, J.D., Szulc, J., Szulkin, M., Tack, A.J.M., Tamburrino, Í., Tate, T.D., Tergemina, E., Theodorou, P., Thompson, K.A., Threlfall, C.G., Tinghitella, R.M., Toledo-Chelala, L., Tong, X., Uroy, L., Utsumi, S., Vandegehuchte, M.L., VanWallendael, A., Vidal, P.M., Wadgymar, S.M., Wang, A-Y, Wang, N., Warbrick, M.L., Whitney, K.D., Wiesmeier, M., Wiles, J.T., Wu, J., Xirocostas, Z.A., Yan, Z., Yao, J., Yoder, J.B., Yoshida, O., Zhang, J., Zhao, Z., Ziter, C.D., Zuellig, M.P., Zufall, R.A., Zurita, J.E., Zytynska, S.E., and Johnson, M.T.J.

Abstract

Urbanization transforms environments in ways that alter biological evolution. We examined whether urban environmental change drives parallel evolution by sampling 110,019 white clover plants from 6169 populations in 160 cities globally. Plants were assayed for a Mendelian antiherbivore defense that also affects tolerance to abiotic stressors. Urban-rural gradients were associated with the evolution of clines in defense in 47% of cities throughout the world. Variation in the strength of clines was explained by environmental changes in drought stress and vegetation cover that varied among cities. Sequencing 2074 genomes from 26 cities revealed that the evolution of urban-rural clines was best explained by adaptive evolution, but the degree of parallel adaptation varied among cities. Our results demonstrate that urbanization leads to adaptation at a global scale.

Published
2022

2. Does urbanisation lead to parallel demographic shifts across the world in a cosmopolitan plant?

Author

Caizergues AE, Santangelo JS, Ness RW, Angeoletto F, Anstett DN, Anstett J, Baena-Diaz F, Carlen EJ, Chaves JA, Comerford MS, Dyson K, Falahati-Anbaran M, Fellowes MDE, Hodgins KA, Hood GR, Iñiguez-Armijos C, Kooyers NJ, Lázaro-Lobo A, Moles AT, Munshi-South J, Paule J, Porth IM, Santiago-Rosario LY, Whitney KS, Tack AJM, and Johnson MTJ

Subjects
Humans, Cities, Ecosystem, Demography, Urbanization, Genetic Drift
Abstract

Urbanisation is occurring globally, leading to dramatic environmental changes that are altering the ecology and evolution of species. In particular, the expansion of human infrastructure and the loss and fragmentation of natural habitats in cities is predicted to increase genetic drift and reduce gene flow by reducing the size and connectivity of populations. Alternatively, the 'urban facilitation model' suggests that some species will have greater gene flow into and within cities leading to higher diversity and lower differentiation in urban populations. These alternative hypotheses have not been contrasted across multiple cities. Here, we used the genomic data from the GLobal Urban Evolution project (GLUE), to study the effects of urbanisation on non-adaptive evolutionary processes of white clover (Trifolium repens) at a global scale. We found that white clover populations presented high genetic diversity and no evidence of reduced N e linked to urbanisation. On the contrary, we found that urban populations were less likely to experience a recent decrease in effective population size than rural ones. In addition, we found little genetic structure among populations both globally and between urban and rural populations, which showed extensive gene flow between habitats. Interestingly, white clover displayed overall higher gene flow within urban areas than within rural habitats. Our study provides the largest comprehensive test of the demographic effects of urbanisation. Our results contrast with the common perception that heavily altered and fragmented urban environments will reduce the effective population size and genetic diversity of populations and contribute to their isolation., (© 2024 The Authors. Molecular Ecology published by John Wiley & Sons Ltd.)

Published
2024
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3. Toxicity of Difenoconazole and Atrazine and Their Photodegradation Products on Aquatic Biota: Environmental Implications in Countries Lacking Good Agricultural Practices.

Author

Mendieta Herrera J, Iñiguez Armijos C, Rosado Alcarria D, and Aguilar Ramírez S

Abstract

Agriculture is fundamental for human development, but it may also have a range of unwanted effects on ecosystems when pesticides inadvertently enter the environment. We determined the toxicity of difenoconazole and atrazine, as well as their photodegradation products, on the bioindicators Lemna minor and Daphnia magna . For L. minor , we assessed the number of leaves, biomass, and chlorophyll content exposed to different concentrations of difenoconazole (0-8 mg/L) and atrazine (0-3.84 mg/L). For D. magna , we assessed the mortality to difenoconazole (0-1.6 mg/L) and atrazine (0-80 mg/L). We found that the higher the concentrations of the pesticides, the higher the toxicity for both bioindicators. In L. minor , the highest toxicity for atrazine was 0.96 mg/L, whereas for difenoconazole, it was 8 mg/L. For D. magna , the 48 h LC 50 for difenoconazole was 0.97 mg/L, while for atrazine, it was 86.19 mg/L. For L. minor , the toxicity of difenoconazole and atrazine was not different compared to that of their photodegradation products. In contrast, for D. magna , difenoconazole, but not atrazine, was more toxic compared to its respective photodegradation products. Pesticides are a serious threat to aquatic biota, and their photodegradation products remain toxic in the environment. Additionally, the use of bioindicators can help monitor these pollutants in aquatic ecosystems in countries where the application of pesticides is imperative for agricultural production.

Published
2023
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4. Global urban environmental change drives adaptation in white clover.

Author

Santangelo JS, Ness RW, Cohan B, Fitzpatrick CR, Innes SG, Koch S, Miles LS, Munim S, Peres-Neto PR, Prashad C, Tong AT, Aguirre WE, Akinwole PO, Alberti M, Álvarez J, Anderson JT, Anderson JJ, Ando Y, Andrew NR, Angeoletto F, Anstett DN, Anstett J, Aoki-Gonçalves F, Arietta AZA, Arroyo MTK, Austen EJ, Baena-Díaz F, Barker CA, Baylis HA, Beliz JM, Benitez-Mora A, Bickford D, Biedebach G, Blackburn GS, Boehm MMA, Bonser SP, Bonte D, Bragger JR, Branquinho C, Brans KI, Bresciano JC, Brom PD, Bucharova A, Burt B, Cahill JF, Campbell KD, Carlen EJ, Carmona D, Castellanos MC, Centenaro G, Chalen I, Chaves JA, Chávez-Pesqueira M, Chen XY, Chilton AM, Chomiak KM, Cisneros-Heredia DF, Cisse IK, Classen AT, Comerford MS, Fradinger CC, Corney H, Crawford AJ, Crawford KM, Dahirel M, David S, De Haan R, Deacon NJ, Dean C, Del-Val E, Deligiannis EK, Denney D, Dettlaff MA, DiLeo MF, Ding YY, Domínguez-López ME, Dominoni DM, Draud SL, Dyson K, Ellers J, Espinosa CI, Essi L, Falahati-Anbaran M, Falcão JCF, Fargo HT, Fellowes MDE, Fitzpatrick RM, Flaherty LE, Flood PJ, Flores MF, Fornoni J, Foster AG, Frost CJ, Fuentes TL, Fulkerson JR, Gagnon E, Garbsch F, Garroway CJ, Gerstein AC, Giasson MM, Girdler EB, Gkelis S, Godsoe W, Golemiec AM, Golemiec M, González-Lagos C, Gorton AJ, Gotanda KM, Granath G, Greiner S, Griffiths JS, Grilo F, Gundel PE, Hamilton B, Hardin JM, He T, Heard SB, Henriques AF, Hernández-Poveda M, Hetherington-Rauth MC, Hill SJ, Hochuli DF, Hodgins KA, Hood GR, Hopkins GR, Hovanes KA, Howard AR, Hubbard SC, Ibarra-Cerdeña CN, Iñiguez-Armijos C, Jara-Arancio P, Jarrett BJM, Jeannot M, Jiménez-Lobato V, Johnson M, Johnson O, Johnson PP, Johnson R, Josephson MP, Jung MC, Just MG, Kahilainen A, Kailing OS, Kariñho-Betancourt E, Karousou R, Kirn LA, Kirschbaum A, Laine AL, LaMontagne JM, Lampei C, Lara C, Larson EL, Lázaro-Lobo A, Le JH, Leandro DS, Lee C, Lei Y, León CA, Lequerica Tamara ME, Levesque DC, Liao WJ, Ljubotina M, Locke H, Lockett MT, Longo TC, Lundholm JT, MacGillavry T, Mackin CR, Mahmoud AR, Manju IA, Mariën J, Martínez DN, Martínez-Bartolomé M, Meineke EK, Mendoza-Arroyo W, Merritt TJS, Merritt LEL, Migiani G, Minor ES, Mitchell N, Mohammadi Bazargani M, Moles AT, Monk JD, Moore CM, Morales-Morales PA, Moyers BT, Muñoz-Rojas M, Munshi-South J, Murphy SM, Murúa MM, Neila M, Nikolaidis O, Njunjić I, Nosko P, Núñez-Farfán J, Ohgushi T, Olsen KM, Opedal ØH, Ornelas C, Parachnowitsch AL, Paratore AS, Parody-Merino AM, Paule J, Paulo OS, Pena JC, Pfeiffer VW, Pinho P, Piot A, Porth IM, Poulos N, Puentes A, Qu J, Quintero-Vallejo E, Raciti SM, Raeymaekers JAM, Raveala KM, Rennison DJ, Ribeiro MC, Richardson JL, Rivas-Torres G, Rivera BJ, Roddy AB, Rodriguez-Muñoz E, Román JR, Rossi LS, Rowntree JK, Ryan TJ, Salinas S, Sanders NJ, Santiago-Rosario LY, Savage AM, Scheepens JF, Schilthuizen M, Schneider AC, Scholier T, Scott JL, Shaheed SA, Shefferson RP, Shepard CA, Shykoff JA, Silveira G, Smith AD, Solis-Gabriel L, Soro A, Spellman KV, Whitney KS, Starke-Ottich I, Stephan JG, Stephens JD, Szulc J, Szulkin M, Tack AJM, Tamburrino Í, Tate TD, Tergemina E, Theodorou P, Thompson KA, Threlfall CG, Tinghitella RM, Toledo-Chelala L, Tong X, Uroy L, Utsumi S, Vandegehuchte ML, VanWallendael A, Vidal PM, Wadgymar SM, Wang AY, Wang N, Warbrick ML, Whitney KD, Wiesmeier M, Wiles JT, Wu J, Xirocostas ZA, Yan Z, Yao J, Yoder JB, Yoshida O, Zhang J, Zhao Z, Ziter CD, Zuellig MP, Zufall RA, Zurita JE, Zytynska SE, and Johnson MTJ

Subjects
Cities, Genes, Plant, Genome, Plant, Hydrogen Cyanide metabolism, Rural Population, Trifolium genetics, Adaptation, Physiological, Biological Evolution, Ecosystem, Trifolium physiology, Urbanization
Abstract

Urbanization transforms environments in ways that alter biological evolution. We examined whether urban environmental change drives parallel evolution by sampling 110,019 white clover plants from 6169 populations in 160 cities globally. Plants were assayed for a Mendelian antiherbivore defense that also affects tolerance to abiotic stressors. Urban-rural gradients were associated with the evolution of clines in defense in 47% of cities throughout the world. Variation in the strength of clines was explained by environmental changes in drought stress and vegetation cover that varied among cities. Sequencing 2074 genomes from 26 cities revealed that the evolution of urban-rural clines was best explained by adaptive evolution, but the degree of parallel adaptation varied among cities. Our results demonstrate that urbanization leads to adaptation at a global scale.

Published
2022
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5. Urbanisation process generates more independently-acting stressors and ecosystem functioning impairment in tropical Andean streams.

Author

Iñiguez-Armijos C, Tapia-Armijos MF, Wilhelm F, and Breuer L

Subjects
Animals, Anthropogenic Effects, Invertebrates, Urbanization, Ecosystem, Rivers
Abstract

The tropical Andes are experiencing rapid population growth and urbanisation has become a major driver impairing stream ecosystems. However, knowledge about multiple-stressors effects on urbanised Andean streams is lacking. In southern Ecuador, we assessed how multiple stressors determine the structural (aquatic invertebrate metrics) and functional (organic matter breakdown and delta N of primary consumers) attributes of streams in a densely populated watershed without wastewater treatment and with contrasting land uses. We found that urbanised streams exhibited individual-stressor effects and that stressor interactions were rare. While structural and function attributes responded negatively to urbanisation, ecosystem functioning metrics were influenced most. Stream ecosystem functions were influenced by water-chemistry stressors, whereas aquatic invertebrate metrics were influenced by physical-habitat stressors. We suggest that managers of urbanised streams in the Andes immediately focus on the most important stressors by reducing inputs of inorganic N and P, re-establishing stream flow and substrate heterogeneity, and restoring riparian vegetation instead of attempting to elucidate intricate interactions among stressors. Our result also demonstrate that stream biomonitoring programs would benefit from a combination of structural and functional indicators to assess anthropogenic effects in a multiple-stressors scenario., (Copyright © 2021 Elsevier Ltd. All rights reserved.)

Published
2022
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