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International audience; A large part of the soil protist diversity is missed in metabarcoding studies based on 0.25 g of soil environmental DNA (eDNA) and universal primers due to ca. 80% co-amplification of non-target plants, animals and fungi. To overcome this problem, enrichment of the substrate used for eDNA extraction is an easily implemented option but its effect has not yet been tested. In this study, we evaluated the effect of a 150 μm mesh size filtration and sedimentation method to improve the recovery of protist eDNA, while reducing the co-extraction of plant, animal and fungal eDNA, using a set of contrasted forest and alpine soils from La Réunion, Japan, Spain and Switzerland. Total eukaryotic diversity was estimated by V4 18S rRNA metabarcoding and classical amplicon sequence variant calling. A 2- to 3- fold enrichment in shelled protists (Euglyphida, Arcellinida and Chrysophyceae) was observed at the sample level with the proposed method, with, at the same time, a 2-fold depletion of Fungi and a 3- fold depletion of Embryophyceae. Protist alpha diversity was slightly lower in filtered samples due to reduced coverage in Variosea and Sarcomonadea, but significant differences were observed in only one region. Beta diversity varied mostly between regions and habitats, which explained the same proportion of variance in bulk soil and filtered samples. The increased resolution in soil protist diversity estimates provided by the filtration-sedimentation method is a strong argument in favour of including it in the standard protocol for soil protist eDNA metabarcoding studies

Conservation biology faces the challenge of safeguarding the ecosystem functions and ecological processes (the water cycle, nutrients, energy flow, and community dynamics) that sustain the multiple facets of biodiversity. Characterization and evaluation of these processes and functions can be carried out through functional attributes or traits related to the exchanges of matter and energy between vegetation and the atmosphere. Based on this principle, satellite imagery can provide integrative spatiotemporal characterizations of ecosystem functions at local to global scales. Here, we provide a multitemporal dataset at protected-area level that characterizes the spatial patterns and temporal dynamics of ecosystem functioning in the Biosphere Reserve of the Sierra Nevada (Spain), captured through the spectral Enhanced Vegetation Index (EVI, using product MOD13Q1.006 from the MODIS sensor) from 2001 to 2018. The database contains, at the annual scale, a synthetic map of Ecosystem Functional Type (EFT) classes from three Ecosystem Functional Attributes (EFAs): (i) descriptors of annual primary production, (ii) seasonality, and (iii) phenology of carbon gains. It also includes two ecosystem functional-diversity indices derived from the above datasets: (i) EFT richness and (ii) EFT rarity. Finally, it provides interannual summaries for all previously mentioned variables, i.e., their long-term means and interannual variability. The datasets are available at two open-source sites (PANGAEA: https://doi.org/10.1594/PANGAEA.924792; Cazorla et al., 2020a; interannual summaries at http://obsnev.es/apps/efts_SN.html, last access: 17 April 2023). This dataset provides scientists, environmental managers, and the public in general with valuable information on the first characterization of ecosystem functional diversity based on primary production developed in the Sierra Nevada, a biodiversity hotspot in the Mediterranean basin and an exceptional natural laboratory for ecological research within the Long-Term Social-Ecological Research (LTER) network. This research has been supported by the Plan Propio PhD program of the University of Almería; projects EarthCul (reference PID2020-118041GB-I00); INDALO (grant no. LifeWatch-2019-10-UGR-01); LifeWatch-2019-10-UGR-01_WP-8, LifeWatch-2019-10-UGR-01_WP-7, and LifeWatch-2019-10-UGR-01_WP-4; ECOPOTENTIAL grant agreement no. 641762; “Ecosystem and Socio-Ecosystem Functional Types: Integrating biophysical and social functions to characterize and map the ecosystems of the Anthropocene” (CGL2014-61610-EXP); Project LIFE-ADAPTAMED (LIFE14 CCA/ES/000612); Generalitat Valenciana and the European Social Fund (APOSTD/2021/188).

A large part of the soil protist diversity is missed in metabarcoding studies based on 0.25 g of soil environmental DNA (eDNA) and universal primers due to ca. 80 % co-amplification of non-target plants, animals and fungi. To overcome this problem, enrichment of the substrate used for eDNA extraction is an easyly implemented option but its effect has not yet been tested. In this study, we evaluated the effect of a 150 µm mesh size filtration and sedimentation method to improve the recovery of protist eDNA, while reducing the co-extraction of plant, animal and fungal eDNA, using a set of contrasted forest and alpine soils from La Réunion, Japan, Spain and Switzerland. Biodiversity of the whole eukaryotic community was estimated with V4 18S rRNA metabarcoding and classical amplicon sequence variant calling. A 2-3-fold enrichment in shelled protists (Euglyphida, Arcellinida and Chrysophyceae) was observed at the sample level with the proposed method, with, at the same time, a 2-fold depletion of Fungi and a 3-fold depletion of Embryophyceae. Protist alpha diversity was slightly lower in filtered samples due to reduced coverage in Variosea and Sarcomonadea, but significant differences were observed in only one region. Beta diversity was mostly impacted by region and habitat, and explained the same variance in bulk soil and filtered samples. The increase resolution in the soil protist diversity provided by the filtration-sedimentation method is a strong argument to include it in the standard preparation of any future soil for protist eDNA metabarcoding studies.

Preserving the genetic diversity of forest species is critical for maintaining their adaptive potential and allowing for generation turnover in forest ecosystems. Considering an uncertain future, it is necessary to establish reliable genetic conservation strategies to optimize the genetic variation preserved within populations in a spatially explicit context to assist decision-makers. Hence, we aimed to incorporate genetic information into spatially designed conservation actions. Cedrus atlantica is a large, long-lived conifer native to the mountains of North Africa, threatened by extinction. The relevant genetic units for conservation were selected using Bayesian analysis. The relative contribution of the populations to the genetic pool that maximized the species' genetic diversity was calculated to design an optimal seed bank. Finally, the relationship between the genetic composition and bioclimatic variables was estimated and projected throughout the study area under current and future climatic conditions. Three relevant genetic units were found for C. atlantica conservation that maximizes genetic diversity in a spatial context. Bioclimatic variables with the highest influence on genetic composition were closely related to climate warming and decreased soil water availability. We identified the role of genetic markers in designing a reliable conservation strategy for forest trees considering climate change, increased deforestation, and aridity. Projections of genetic composition due to the climate in the study region of North Africa provide spatially explicit guidance for optimizing the selection and preservation of seed banks., Andalusian Plan for Research, Development and Innovation RTI2018-101714- B-I00, Spanish government, State R&D Program Oriented to the Challenges of the Society A-RNM-688-UGR20 B-RNM-404-UGR18 P18-RT-1170 P18-RT-4963

Preserving the genetic diversity of forest species is critical for maintaining their adaptive potential and allowing for generation turnover in forest ecosystems. Considering an uncertain future, it is necessary to establish reliable genetic conservation strategies to optimize the genetic variation preserved within populations in a spatially explicit context to assist decision-makers. Hence, we aimed to incorporate genetic information into spatially designed conservation actions.

During the last decades, phylogeography has transformed the ways to analyze and understand plant diversity and biogeography. The repeated and increasingly detailed articles made from DNA data with phylogeographical procedures and algorithms have revolutionized biodiversity research, particularly on biodiversity conservation. This paper presents a systematic literature review of the different ways in which phylogeography has been applied to plants in Mediterranean-type ecosystems (MTEs), especially to rare, threatened, and endemic plants. Studies ranged from basic research to how phylogeography is actually contributing to management conservation of Mediterranean plants. Finally, new and future phylogeography perspectives with integrative scientific arguments and conceptual bases applied to plant conservation biology are discussed.