303 results on '"M.J. Walsh"'
Search Results
2. The role of zircon in hydrothermal heavy REE mineralisation: The case for unconformity-related ore deposits of north-west Australia
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Jessica M.J. Walsh and Carl Spandler
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Geochemistry and Petrology ,Geology - Published
- 2023
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3. Moving Toward Personalized Cystic Fibrosis Care: A Workflow for Single-Cell RNA-Sequencing
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M.N. Januska, Y. Sun, F. Dekio, and M.J. Walsh
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- 2022
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4. Progress in ITER ECE diagnostic design and integration
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Y. Liu, V.S. Udintsev, S. Danani, G. Paraiso, G. Taylor, M.E. Austin, A. Basile, J.H. Beno, B. Bunkowski, R. Feder, T. Giacomin, J. Guirao, S. Houshmandyar, H. Huang, A.E. Hubbard, S. Hughes, S. Jha, A. Khodak, R. Kumar, S. Kumar, V. Kumar, P. Maquet, C. Nazare, H. Neilson, A. Ouroua, S. Pak, H.K.B. Pandya, C. Penney, P.E. Phillips, S. Pish, J. Poissy, W.L. Rowan, A. Saxena, M. Schneider, S.M. Strank, S. Thomas, G. Vayakis, F.L. Waelbroeck, M.J. Walsh, and L. Worth
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Instrumentation ,Mathematical Physics - Abstract
The ITER electron cyclotron emission (ECE) diagnostic system has primary roles in providing measurements of the core electron temperature profile and the electron temperature fluctuation associated with the neoclassical tearing modes. The ITER ECE system includes a radial and oblique line-of-sight. Four 43-meter long low-loss transmission lines (TLs) are designed to transmit millimeter wave power in the frequency range of 70–1000 GHz in both X- and O-mode polarization from the port plug to the ECE instrumentation room in the diagnostic building. The measurement instrumentation includes two Fourier transform spectrometer (FTS) systems and two radiometer systems. The Indian Domestic Agency (IN-DA) and United States Domestic Agency share the responsibility. The IN-DA scope excluding instrumentation and control has passed its preliminary design review and is progressing towards the final design review (FDR). In parallel, the diagnostic integration in different areas is ongoing. Several captive components for the TLs have passed FDR and will be manufactured for installation in the tokamak building soon. A peer review meeting has been held on the prototype hot calibration source, and its integration and new thermal analysis in the diagnostic shield module are continuing. A prototype TL is being tested. A prototype polarizing Martin-Puplett type FTS, operating in the frequency range 70–1000 GHz, features an in-vacuo fast scanning mechanism and a cryo-cooled dual-channel THz detector system. Its performance has been assessed in detail against ITER requirements.
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- 2022
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5. On the fluid drag reduction in scallop surface.
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Li B, Zhao Z, Meng L, and Zhu L
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In the field of biomimetics, the tiny riblet structures inspired by shark skin have been extensively studied for their drag reduction properties in turbulent flows. Here, we show that the ridged surface texture of another swimming creature in the ocean, i.e., the scallops, also has some friction drag reduction effect. In this study, we investigated the potential drag reduction effects of scallop shell textures using computational fluid dynamics simulations. Specifically, we constructed a conceptual model featuring an undulating surface pattern on a conical shell geometry that mimics scallop. Simulations modeled turbulent fluid flows over the model inserted at different orientations relative to the flow direction. The results demonstrate appreciable friction drag reduction generated by the ribbed hierarchical structures encasing the scallop, while partial pressure drag reduction exhibits dependence on alignment of scallop to the predominant flow direction. Theoretical mechanisms based on classic drag reduction theory in turbulence was established to explain the drag reduction phenomena. Given the analogous working environments of scallops and seafaring vessels, these findings may shed light on the biomimetic design of surface textures to enhance maritime engineering applications. Besides, this work elucidates an additional evolutionary example of fluid drag reduction, expanding the biological repertoire of swimming species., (© 2024. The Author(s), under exclusive licence to EDP Sciences, SIF and Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2024
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6. Temporal and spatial dynamics within the fungal microbiome of grape fermentation.
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Onetto CA, Ward CM, Van Den Heuvel S, Hale L, Cuijvers K, and Borneman AR
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- Microbiota, Vitis microbiology, Fermentation, Mycobiome, Fungi classification, Fungi genetics, Fungi metabolism, Fungi isolation & purification, Biodiversity
- Abstract
Over 6 years, we conducted an extensive survey of spontaneous grape fermentations, examining 3105 fungal microbiomes across 14 distinct grape-growing regions. Our investigation into the biodiversity of these fermentations revealed that a small number of highly abundant genera form the core of the initial grape juice microbiome. Consistent with previous studies, we found that the region of origin had the most significant impact on microbial diversity patterns. We also discovered that certain taxa were consistently associated with specific geographical locations and grape varieties, although these taxa represented only a minor portion of the overall diversity in our dataset. Through unsupervised clustering and dimensionality reduction analysis, we identified three unique community types, each exhibiting variations in the abundance of key genera. When we projected these genera onto global branches, it suggested that microbiomes transition between these three broad community types. We further investigated the microbial community composition throughout the fermentation process. Our observations indicated that the initial microbial community composition could predict the diversity during the early stages of fermentation. Notably, Hanseniaspora uvarum emerged as the primary non-Saccharomyces species within this large collection of samples., (© 2024 John Wiley & Sons Ltd.)
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- 2024
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7. Changes to the Autophagy-Related Muscle Proteome Following Short-Term Treatment with Ectoine in the Duchenne Muscular Dystrophy Mouse Model mdx.
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Gómez Armengol, Eulàlia, Merckx, Caroline, De Sutter, Hanne, De Bleecker, Jan L., and De Paepe, Boel
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HEAT shock proteins ,DUCHENNE muscular dystrophy ,MUSCULAR dystrophy ,SKELETAL muscle ,OSMOTIC pressure - Abstract
The most severe form of muscular dystrophy (MD), known as Duchenne MD (DMD), remains an incurable disease, hence the ongoing efforts to develop supportive therapies. The dysregulation of autophagy, a degradative yet protective mechanism activated when tissues are under severe and prolonged stress, is critically involved in DMD. Treatments that harness autophagic capacities therefore represent a promising therapeutic approach. Osmolytes are protective organic molecules that regulate osmotic pressure and cellular homeostasis and may support tissue-repairing autophagy. We therefore explored the effects of the osmolyte ectoine in the standard mouse model of DMD, the mdx, focusing on the autophagy-related proteome. Mice were treated with ectoine in their drinking water (150 mg/kg) or through daily intraperitoneal injection (177 mg/kg) until they were 5.5 weeks old. Hind limb muscles were dissected, and samples were prepared for Western blotting for protein quantification and for immunofluorescence for an evaluation of tissue distribution. We report changes in the protein levels of autophagy-related 5 (ATG5), Ser366-phosphorylated sequestosome 1 (SQSTM1), heat shock protein 70 (HSP70), activated microtubule-associated protein 1A/1B-light chain 3 (LC3 II) and mammalian target of rapamycin (mTOR). Most importantly, ectoine significantly improved the balance between LC3 II and SQSTM1 levels in mdx gastrocnemius muscle, and LC3 II immunostaining was most pronounced in muscle fibers of the tibialis anterior from treated mdx. These findings lend support for the further investigation of ectoine as a potential therapeutic intervention for DMD. [ABSTRACT FROM AUTHOR]
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- 2025
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8. Digital Tools and Decision Support Systems in Agroecology: Benefits, Challenges, and Practical Implementations.
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Petraki, Dimitra, Gazoulis, Ioannis, Kokkini, Metaxia, Danaskos, Marios, Kanatas, Panagiotis, Rekkas, Andreas, and Travlos, Ilias
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DECISION support systems ,SUSTAINABILITY ,DIGITAL technology ,SUSTAINABLE agriculture ,CLIMATE change - Abstract
Farmers are increasingly faced with challenges such as climate change, population growth, and the need for sustainable food production, while simultaneously having to address the environmental impacts of conventional agriculture. Agroecology has emerged as a holistic and sustainable approach to agriculture, integrating environmental, social, and economic principles. This study investigates the role of digital tools, including decision support systems (DSSs), in supporting agroecological transitions. Through a literature review and analysis of case studies, this paper examines the benefits and challenges associated with the adoption of digital tools in agroecology, highlighting their potential to promote sustainable practices such as soil and water management, pest control, and efficient resource use. The findings indicate that while digital solutions offer significant potential to enhance productivity and improve environmental outcomes, their adoption remains limited due to barriers such as low digital literacy, lack of infrastructure, and concerns about effectiveness in real-world farming conditions. Despite these challenges, digital solutions offer significant potential to enhance productivity, improve environmental outcomes, and support farmers' decision-making. To comprehensively understand their benefits, a holistic approach is necessary, combining digital tools with hands-on training, policy support, and ongoing research. This paper highlights the role of digital tools in agroecology, explores their benefits and challenges, and discusses the need for continued research to assess their long-term potential in terms of the agroecological transition. [ABSTRACT FROM AUTHOR]
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- 2025
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9. Integrated Insights into Metabolic and Bariatric Surgery: Improving Life Quality and Reducing Mortality in Obesity.
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Marin, Ruxandra-Cristina, Radu, Andrei-Flavius, Negru, Paul Andrei, Radu, Ada, Negru, Denisa, Aron, Raluca Anca Corb, Bodog, Teodora Maria, Bodog, Ruxandra Florina, Maghiar, Paula Bianca, and Brata, Roxana
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BILIOPANCREATIC diversion ,MEDICAL personnel ,SLEEVE gastrectomy ,GASTRIC bypass ,BARIATRIC surgery ,WEIGHT loss - Abstract
Metabolic and bariatric surgery (MBS) is an effective intervention for patients with severe obesity and metabolic comorbidities, particularly when non-surgical weight loss methods prove insufficient. MBS has shown significant potential for improving quality of life and metabolic health outcomes in individuals with obesity, yet it carries inherent risks. Although these procedures offer a multifaceted approach to obesity treatment and its clinical advantages are well-documented, the limited understanding of its long-term outcomes and the role of multidisciplinary care pose challenges. With an emphasis on quality-of-life enhancements and the handling of postoperative difficulties, the present narrative review seeks to compile the most recent findings on MBS while emphasizing the value of an integrated approach to maximize patient outcomes. Effective MBS and patients' management require a collaborative team approach, involving surgeons, dietitians, psychologists, pharmacists, and other healthcare providers to address not only physiological but also psychosocial patient needs. Comparative studies demonstrate the efficacy of various MBS methods, including Roux-en-Y gastric bypass and laparoscopic sleeve gastrectomy that may considerably decrease morbidity and mortality in individuals with obesity. Future studies should target long-term patient treatment, and decision making should be aided by knowledge of obesity, comorbidity recurrence rates, and permanence of benefits. [ABSTRACT FROM AUTHOR]
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- 2025
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10. Modeling of a Non-Aqueous Redox Flow Battery for Performance and Capacity Fade Analysis.
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D'Adamo, Mirko, Daub, Nicolas, Trilla, Lluis, Saez-Zamora, Jose A., and Paz-Garcia, Juan Manuel
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FLOW batteries ,POROUS electrodes ,ENERGY storage ,OXIDATION-reduction reaction ,SPECIES distribution - Abstract
This study presents a prototype non-aqueous redox flow battery that advances the capabilities of conventional systems by achieving a wide operational voltage range, high efficiency, and prolonged cycle life. Leveraging the redox pair 10-[2-(2-methoxy ethoxy)ethyl]-10H-phenothiazine and 2-ethylterephthalonitrile, the system delivers a discharge cell voltage ranging from approximately 2.25 V to 1.9 V. To address the economic challenges associated with non-aqueous redox flow batteries, this work explores a cost-efficient design using a symmetric cell architecture and a low-cost, porous separator. To evaluate the feasibility and scalability of this approach, a 2D time-transient reactive transport model is developed, integrating Nernst–Planck electroneutrality principles and porous electrode kinetics. The model is optimized and validated against experimental charge/discharge cycles, accurately predicting voltage behavior. Additionally, the study provides crucial insights into the crossover phenomenon, elucidating the transport dynamics and spatial distribution of active species within the cell. This comprehensive framework establishes a robust foundation for future efforts to scale and optimize non-aqueous redox flow batteries for large-scale energy storage applications, bringing them closer to commercial viability. [ABSTRACT FROM AUTHOR]
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- 2025
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11. Knowledge, Practices, and Attitudes Towards Silver Diamine Fluoride Therapy Among Dentists and Students in Southeastern Spain.
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Serna-Muñoz, Clara, Lucas-Porras, Marina, Martínez-Beneyto, Yolanda, Pérez-Silva, Amparo, Ibañez-López, Francisco Javier, and Ortiz-Ruiz, Antonio José
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DENTAL students ,DENTISTS' attitudes ,DENTAL fluoride treatment ,CHILD patients ,DENTAL caries - Abstract
Background/Objectives: The use of silver diamine fluoride (SDF) has increased in recent years for the management of caries lesions in children and adults. The aim of this study is to determine the level of knowledge and the attitude of Spanish dentists (GDPs) and final-year dental students (DSs) regarding the use of SDF. Methods: A cross-sectional survey (questionnaire) was carried out aimed at final-year dental students (DSs) (n = 43) and registered dentists (GDPs) (n = 1050) in the autonomous community of the region of Murcia (Spain). Results: the response rates were GDPs 7.7% (n = 81) and DSs 84.5% (n = 38). Only 20.98% of GDP respondents reported having been trained on SDF versus 100% of DSs. Significant differences were observed between the groups (p < 0.05). While 94.7% of the students were aware of the indications for the use of SDF, only 56.8% of the general dentists reported it. Similarly, for hypersensitivity treatment, 71.1% of the students were informed versus 40.7% of the general dentists, and indications for paediatric patients, 100% for the DS group and 59.3% in GDPs. In adult patients, indications vary from GDPs' (50%) to DSs' (25.9%) responses. About 94.7% of DSs know the advantages of use and only 50.6% of GDPs. Both groups showed reluctance to use SDF in esthetic zones, with greater acceptance in non-esthetic areas (p < 0.05). In practice, fewer GDPs (27.16%) and DSs (23.68%) had applied SDF, reflecting a gap between knowledge and implementation. Conclusions: Dental students had a significantly higher level of knowledge, a situation that evidences the high level of education and training in the curricular guides of the universities. [ABSTRACT FROM AUTHOR]
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- 2025
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12. Targets for Urban Stormwater Management in Australia.
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O'Halloran, Dan, McLean, Jonathon, Morison, Peter, Sims, Alex, Weber, Tony, Markwell, Kim, Walker, Ben, Light, Oliver, and Hart, Barry
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METROPOLIS ,CITIES & towns ,SEWAGE ,URBAN growth ,MUNICIPAL water supply ,URBAN runoff management ,WATER reuse - Abstract
Increasing urbanisation is occurring in Australia's major cities and in almost every country in the world. This creates a challenge for the urban water sector, which not only needs to provide traditional water services (i.e., wastewater, domestic water) for a rapidly growing population, but also to service potential additional demands to contribute to enhanced amenity, and to do so in the context of climate change. This paper is focused on stormwater management controls for the develop of new greenfield urban sites in the three major east coast Australian cities—Melbourne, Sydney and Brisbane. While stormwater management in all three cities is focused on the protection of community values of the waterways, including environment (ecology), amenity and recreation, the scale or type of the waterways considered is considerably different—Melbourne has adopted a regional waterway strategy, while the Sydney and Brisbane approach is more localised. Pollution load reduction targets (TSS, TP, TN and litter) from new urban areas have been enforced in all three cities for many years, although there is concern that these targets primarily aimed at protecting the values of downstream bays (e.g., Port Phillip Bay, Sydney Harbour and Morton Bay) will not necessarily protect the values of the contributing waterways. However, targets to control stormwater volumes entering waterways are proving to be considerably more difficult to both develop and implement. These targets are typically expressed as volumes of stormwater to be harvested and/or infiltrated for every additional hectare of directly connected impervious (DCI) surface created as a result of urban development. The three cities have approached the setting of stormwater flow targets somewhat differently, as is apparent from the details provided in the paper. Additionally, we argue that there is a need for the development of new targets related to the reuse of stormwater and its integration with wastewater and domestic water management. [ABSTRACT FROM AUTHOR]
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- 2024
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13. Bis [4,4′-(1,3-Phenylenebis(azanylylidene))-bis(3,6-di- tert -butyl-2-oxycyclohexa-2,5-dien-1-one)-bis(dimethylsulfoxide)nickel(II)].
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Meshcheryakova, Irina N., Druzhkov, Nikolay O., Yakushev, Ilya A., Arsenyeva, Kseniya V., Klimashevskaya, Anastasiya V., and Piskunov, Alexandr V.
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MOLECULAR structure ,ELECTRONIC spectra ,LIGANDS (Chemistry) ,ORGANIC solvents ,X-ray spectroscopy - Abstract
A new cage-like dimeric nickel(II) complex Ni
2 L2 (DMSO)4 based on a ditopic redox-active hydroxy-para-iminobenzoquinone type ligand LH2 (L is 4,4′-(1,3-phenylene-bis(azaneylylidene))-bis(3,6-di-tert-butyl-2-oxycyclohexa-2,5-dien-1-one dianion) was synthesized in DMSO at 120 °C. The molecular structure of the synthesized compound was determined by X-ray diffraction analysis. The complex Ni2 L2 (DMSO)4 is almost insoluble in all organic solvents, probably due to the presence of a large number of intermolecular contacts in its structure. The electronic spectrum and thermal stability of the crystalline compound have been studied. [ABSTRACT FROM AUTHOR]- Published
- 2024
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14. Wild-Mouse-Derived Gut Microbiome Transplantation in Laboratory Mice Partly Alleviates House-Dust-Mite-Induced Allergic Airway Inflammation.
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Islam, Md Zohorul, Jozipovic, Danica, Lopez, Pablo Atienza, Krych, Lukasz, Correia, Banny Silva Barbosa, Bertram, Hanne Christine, Hansen, Axel Kornerup, and Hansen, Camilla Hartmann Friis
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FECAL microbiota transplantation ,LABORATORY mice ,MICROBIAL metabolites ,GENE expression ,IMMUNE response ,LUNGS - Abstract
Laboratory mice are instrumental for preclinical research but there are serious concerns that the use of a clean standardized environment for specific-pathogen-free (SPF) mice results in poor bench-to-bedside translation due to their immature immune system. The aim of the present study was to test the importance of the gut microbiota in wild vs. SPF mice for evaluating host immune responses in a house-dust-mite-induced allergic airway inflammation model without the influence of pathogens. The wild mouse microbiome reduced histopathological changes and TNF-α in the lungs and serum when transplanted to microbiota-depleted mice compared to mice transplanted with the microbiome from SPF mice. Moreover, the colonic gene expression of Gata3 was significantly lower in the wild microbiome-associated mice, whereas Muc1 was more highly expressed in both the ileum and colon. Intestinal microbiome and metabolomic analyses revealed distinct profiles associated with the wild-derived microbiome. The wild-mouse microbiome thus partly reduced sensitivity to house-dust-mite-induced allergic airway inflammation compared to the SPF mouse microbiome, and preclinical studies using this model should consider using both 'dirty' rewilded and SPF mice for testing new therapeutic compounds due to the significant effects of their respective microbiomes and derived metabolites on host immune responses. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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15. Mercury and Arctic Char Gill Microbiota Correlation in Canadian Arctic Communities.
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Amill, Flora, Couture, Patrice, and Derome, Nicolas
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ARCTIC char ,HAZARDOUS waste sites ,MERCURY poisoning ,TOP predators ,XENOBIOTICS - Abstract
Arctic char is a top predator in Arctic waters and is threatened by mercury pollution in the context of changing climate. Gill microbiota is directly exposed to environmental xenobiotics and play a central role in immunity and fitness. Surprisingly, there is a lack of literature studying the effect of mercury on gill microbiota. To fill this knowledge gap, our primary goal was to measure to what extent gill exposure to mercury may alter gill microbiota activity in Arctic char. Specifically, we calculated the correlation between the taxonomic distribution of gill-associated bacterial symbiont activity and total mercury concentration in livers and muscles in wild populations of Arctic char in the Canadian Arctic. Our results showed that total mercury concentrations in tissues were higher in Ekaluktutiak (Nunavut) than in the other sites in Nunavik. Proteobacteria was the main phylum correlated to mercury concentration in both tissues, followed by Bacteroidetes and Cyanobacteria. In the most contaminated sites, Aeromonas and Pseudomonas (Proteobacteria) were predominant, while mercury concentration negatively correlated with Photobacterium (Proteobacteria) or Cerasicoccus (Verrucomicrobia). In summary, we found that mercury contamination correlates with active gill microbiota composition, with potential implications of strains in modulating mercury toxicity, making them interesting for future biomarker studies. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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16. The Effect of Post-Exercise Warm Water Immersion on Anaerobic Power Performance in College Students.
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Newlands, Chloe E., Aquino, Michele, Young, Kevin Z., Gupta, Soniya T., Petrizzo, John, Wygand, John W., and Otto, Robert M.
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WATER immersion ,HOT water ,COOLDOWN ,HEART beat ,COLLEGE students - Abstract
Background/Objectives: The purpose of this study was to investigate the effect of a short-term passive post-exercise heat acclimation (HA) protocol on anaerobic performance in college students. Methods: In total, 28 participants (age 22.3 ± 2.1 years, height 168 ± 9.1 cm, mass 71.5 ± 16.6 kg) volunteered and were randomly divided into either an intervention (INT) or control (CON) group. Both groups followed a consecutive two-day protocol, consisting of a 25 min submaximal cycle @ 50–60% heart rate reserve (HRR), followed by a 25 min hot water immersion (INT) or nothing (CON). All participants performed a 30 s Wingate Anaerobic Test (WAnT) on four separate occasions—familiarization, pre-intervention, acutely post-intervention, and 24 h post intervention. The WAnT measured their peak power (W), relative peak power (W/kg), mean power (W), fatigue index (%), and total work (kJ). Results: From the results of the Factorial ANOVA, it was found that there were no significant differences, with no main effect for group (INT vs. CON) or time (Trials 1–4) and no significant interaction across all measured variables (p > 0.05). Conclusions: A two-day post-exercise passive HA protocol utilizing hot water immersion had no significant effect on the measurement of anaerobic performance in college students. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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17. Hydration Considerations to Improve the Physical Performance and Health of Firefighters.
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Holland-Winkler, Angelia M. and Hamil, Blake K.
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SPECIFIC gravity ,EQUILIBRIUM testing ,WATER-electrolyte balance (Physiology) ,PERSONAL protective equipment ,PHYSICAL mobility ,FIREFIGHTING - Abstract
Background/Objectives: Firefighters are exposed to a high level of stress as they often perform physically challenging work in hazardous environments while responsible for rescuing and keeping those around them safe. To add to this stress, they are also required to work in heavy, unbreathable personal protective equipment which promotes dehydration. These occupational demands paired with dehydration may lead to increased core temperatures, cardiac strain, and overall risk for sudden cardiac events. Thus, it is important to include hydration assessments and determine fluid needs when firefighters are on shift to ensure their personal safety as well as the safety of those around them by optimizing physical performance by maintaining adequate hydration. Therefore, the purpose of this review is to identify markers of hydration, classifications of hydration status, current hydration recommendations, and hydration interventions that may contribute to the overall clarity of hydration protocols that may optimize performance and health of firefighters. In addition, the impact of common medications, exercise training, and health conditions on hydration status related to firefighters will be discussed. Methods: A comprehensive literature search was conducted to discuss the purpose statements. Results: Hydration recommendations for firefighters include (1) assessing hydration status with multiple measurements including body mass, urine specific gravity and thirst sensation, and (2) following general hydration recommendations on rest days and exercise hydration protocols during firefighting activities which may be altered according to hydration status measurements. Conclusion: Randomized controlled trials in firefighters are needed to determine the impact of maintaining adequate hydration on health markers. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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18. Clinical Efficacy of Probiotics for Allergic Rhinitis: Results of an Exploratory Randomized Controlled Trial.
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Lungaro, Lisa, Malfa, Patrizia, Manza, Francesca, Costanzini, Anna, Valentini, Guido, Squarzanti, Diletta Francesca, Viciani, Elisa, Velichevskaya, Alena, Castagnetti, Andrea, Barbalinardo, Marianna, Gentili, Denis, Cariani, Alessio, Ghisellini, Sara, Caputo, Fabio, De Giorgio, Roberto, and Caio, Giacomo
- Abstract
Background: Allergic Rhinitis (AR) is an atopic disease affecting the upper airways of predisposed subjects exposed to aeroallergens. This study evaluates the effects of a mix of specific probiotics (L. acidophilus PBS066, L. rhamnosus LRH020, B. breve BB077, and B. longum subsp. longum BLG240) on symptoms and fecal microbiota modulation in subjects with AR. Methods: Probiotic effects were evaluated at the beginning (T0), at four and eight weeks of treatment (T1 and T2, respectively), and after four weeks of follow-up from the end of treatment (T3) (n = 19) compared to the placebo group (n = 22). AR symptoms and quality of life were evaluated by the mini rhinitis quality of life questionnaire (MiniRQLQ) at each time point. Allergic immune response and fecal microbiota compositions were assessed at T0, T2, and T3. The study was registered on Clinical-Trial.gov (NCT05344352). Results: The probiotic group showed significant improvement in the MiniRQLQ score at T1, T2, and T3 vs. T0 (p < 0.01, p < 0.05, p < 0.01, respectively). At T2, the probiotic group showed an increase in Dorea, which can be negatively associated with allergic diseases, and Fusicatenibacter, an intestinal bacterial genus with anti-inflammatory properties (p-value FDR-corrected = 0.0074 and 0.013, respectively). Conversely, at T3 the placebo group showed an increase in Bacteroides and Ruminococcaceae unassigned, (p-value FDR-corrected = 0.033 and 0.023, respectively) which can be associated with allergies, while the probiotic group showed a significative increase in the Prevotella/Bacteroides ratio (p-value FDR-corrected = 0.023). Conclusions: This probiotic formulation improves symptoms and quality of life in subjects with AR, promoting a shift towards anti-inflammatory and anti-allergic bacterial species in the intestinal microbiota. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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19. The Impact of Complementary Feeding on Fecal Microbiota in Exclusively Breast-Fed Infants with Cystic Fibrosis (A Descriptive Study).
- Author
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Asensio-Grau, Andrea, Garriga, María, Vicente, Saioa, Andrés, Ana, Ribes-Koninckx, Carmen, and Calvo-Lerma, Joaquim
- Abstract
Background/Objectives: Early life gut microbiota plays a pivotal role in shaping immunity, metabolism, and overall health outcomes. This is relevant in healthy infants but may be even more crucial in infants with chronic devastating diseases, such as cystic fibrosis (CF). While the introduction of solid foods in healthy infants modifies the composition of colonic microbiota, less knowledge is available on those with CF. The aim of this descriptive observational study was to assess the composition of fecal microbiota in six exclusively breast-fed infants with CF, and then explore the changes induced upon the introduction of different foods. Methods: two types of fecal samples were collected from each subject: one during the exclusive-breastfeeding period, and the other after incorporating each new food in the ad libitum diet. The microbiota composition was analyzed by 16S rRNA amplicon sequencing. Results: Wide heterogenicity in the composition at the phylum level (variable proportions of Actinobacteriota, Proteobacteria, and Firmicutes, and the absence of Bacteroidota in all subjects) was found, and different enterotypes were characterized in each subject by the main presence of one genus: Bifidobacterium in Subject 1 (relative abundance of 54.4%), Klebsiella in Subject 3 (49.1%), Veillonella in Subjects 4 and 5 (32.7% and 36.9%, respectively), and Clostridium in Subject 6 (48.9%). The transition to complementary feeding induced variable changes in microbiota composition, suggesting a subject-specific response and highlighting the importance of inter-individual variation. Conclusions: Further studies are required to identify which foods contribute to shaping colonic microbiota in the most favorable way for patients with CF using a personalized approach. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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20. Sample Preparation for Metabolomic Analysis in Exercise Physiology.
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Nakhod, Valeriya I., Butkova, Tatiana V., Malsagova, Kristina A., Petrovskiy, Denis V., Izotov, Alexander A., Nikolsky, Kirill S., and Kaysheva, Anna L.
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EXERCISE physiology ,BLOOD testing ,PHENOTYPES ,BIOMOLECULES ,PROTEOMICS ,PERSPIRATION - Abstract
Metabolomics investigates final and intermediate metabolic products in cells. Assessment of the human metabolome relies principally on the analysis of blood, urine, saliva, sweat, and feces. Tissue biopsy is employed less frequently. Understanding the metabolite composition of biosamples from athletes can significantly improve our knowledge of molecular processes associated with the efficiency of training and recovery. Such knowledge may also lead to new management opportunities. Successful execution of metabolomic studies requires simultaneous qualitative and quantitative analyses of numerous small biomolecules in samples under test. Unlike genomics and proteomics, which do not allow for direct assessment of enzymatic activity, metabolomics focuses on biochemical phenotypes, providing unique information about health and physiological features. Crucial factors in ensuring the efficacy of metabolomic analysis are the meticulous selection and pre-treatment of samples. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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21. Caffeine Intake Alters Recovery Sleep after Sleep Deprivation.
- Author
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Pauchon, Benoit, Beauchamps, Vincent, Gomez-Mérino, Danielle, Erblang, Mégane, Drogou, Catherine, Beers, Pascal Van, Guillard, Mathias, Quiquempoix, Michaël, Léger, Damien, Chennaoui, Mounir, and Sauvet, Fabien
- Abstract
Background: Caffeine is a well-known psychostimulant reputed to alleviate the deleterious effects of sleep deprivation. Nevertheless, caffeine can alter sleep duration and quality, particularly during recovery sleep. We evaluated the effects of acute caffeine intake on the duration and quality of recovery sleep following total sleep deprivation (TSD), taking into account daily caffeine consumption. Methods: Forty-one participants performed a double-blind, crossover TSD protocol (38 h of continuous wakefulness) with acute caffeine or placebo. Caffeine (2.5 mg/kg) or placebo was administered twice during continuous wakefulness (last treatment 6.5 h before bedtime for the recovery night). Polysomnographic measurements were recorded using a connected headband. Results: TSD was associated with a rebound in total sleep time (TST) on the recovery night (+110.2 ± 23.2 min, p < 0.001). Caffeine intake decreased this recovery TST (−30.2 ± 8.2 min p = 0.02) and the N3 sleep stage duration (−35.6 ± 23.2 min, p < 0.01). Caffeine intake altered recovery sleep continuity (increased number of long awakenings), stability (higher stage transition frequency), and organization (less time spent in complete sleep cycle) and decreased the delta power spectral density during NREM sleep. On the recovery night, habitual daily caffeine consumption was negatively correlated with TST in caffeine and placebo conditions and positively correlated with wake after sleep onset (WASO) duration and with the frequency of long (>2 min) awakenings in the caffeine condition only. Conclusions: Acute caffeine intake during TSD affects nighttime recovery sleep, with an interaction with daily consumption. These results may influence advice on caffeine intake for night-shift workers. (NCT03859882). [ABSTRACT FROM AUTHOR]
- Published
- 2024
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22. Multi-Omics Analysis Unravels the Impact of Stool Sample Logistics on Metabolites and Microbial Composition.
- Author
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Krause, Jannike L., Engelmann, Beatrice, Lallinger, David J. D., Rolle-Kampczyk, Ulrike, von Bergen, Martin, and Chang, Hyun-Dong
- Subjects
SHORT-chain fatty acids ,HUMAN microbiota ,MICROBIAL metabolites ,MULTIOMICS ,FLOW cytometry - Abstract
Human health and the human microbiome are inevitably intertwined, increasing their relevance in clinical research. However, the collection, transportation and storage of faecal samples may introduce bias due to methodological differences, especially since postal shipping is a common practise in large-scale clinical cohort studies. Using four different Omics layer, we determined the structural (16S rRNA sequencing, cytometric microbiota profiling) and functional integrity (SCFAs, global metabolome) of the microbiota in relation to different easy-to-handle conditions. These conditions were storage at −20 °C, −20 °C as glycerol stock, 4 °C and room temperature with and without oxygen exposure for a maximum of one week. Storage time affected the microbiota on all Omics levels. However, the magnitude was donor-dependent, highlighting the need for purpose-optimized sample collection in clinical multi-donor studies. The effects of oxygen exposure were negligible for all analyses. At ambient temperature, SCFA and compositional profiles were stable for 24 h and 48 h, respectively, while at 4 °C, SCFA profiles were maintained for 48 h. The global metabolome was highly susceptible, already changing at 24 h in non-frozen conditions. Thus, faecal microbiota was best preserved on all levels when transported as a native sample frozen within 24 h, leading to the least biased outcomes in the analysis. We conclude that the immediate freezing of native stool samples for transportation to the lab is best suited for planned multi-Omics analyses that include metabolomics to extend standard sequencing approaches. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
23. Analysis of Aromatic Fraction of Sparkling Wine Manufactured by Second Fermentation and Aging in Bottles Using Different Types of Closures.
- Author
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Jové, Patricia, Mateu-Figueras, Glòria, Bustillos, Jessica, and Martín-Fernández, Josep Antoni
- Subjects
SPARKLING wines ,GAS chromatography/Mass spectrometry (GC-MS) ,THERMAL desorption ,CORK ,MULTIVARIATE analysis - Abstract
This study aimed to evaluate the impact of different closures used in second fermentation on the aromatic fraction of sparkling wine. Six types of closures (cork stoppers and screw caps) and 94 months of aging in a bottle were investigated. Headspace solid-phase microextraction (HS-SPME) and thermal desorption (TD) procedures coupled to gas chromatography-mass spectrometry (GCMSMS) analysis were applied. The vectors containing the relative abundance of the volatile compounds are compositional vectors. The statistical analysis of compositional data requires specific techniques that differ from standard techniques. Overall, 101 volatile compounds were identified. HS-SPME extracted the highest percentage of esters, ketones and other compounds, while TD was a useful tool for the obtention of alcohol, acid, ether and alkane compounds. Esters were the most abundant family of compounds. Compositional data analysis, which was applied to study the impact of different closures used in bottle aging after second fermentation on the volatile composition of sparkling wine, concluded that there are differences in the relative abundance of certain volatile compounds between cork stoppers and screw-cap closures. Overall, the most abundant part in screw-cap closures was ethyl hexanoate, and it was ethyl octanoate in cork stoppers. Also, the proportional amount of dimethylamine was higher in screw-cap closures than cork stoppers relative to the entire sample. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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24. Synergistic Dual Targeting of Thioredoxin and Glutathione Systems Irrespective of p53 in Glioblastoma Stem Cells.
- Author
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Jamali, Fatemeh, Lan, Katherine, Daniel, Paul, Petrecca, Kevin, Sabri, Siham, and Abdulkarim, Bassam
- Subjects
REACTIVE oxygen species ,DRUG repositioning ,AURANOFIN ,CYTOTOXINS ,BRAIN cancer - Abstract
Glioblastoma (GBM) is an incurable primary brain cancer characterized by increased reactive oxygen species (ROS) production. The redox-sensitive tumor suppressor gene TP53, wild-type (wt) for 70% of patients, regulates redox homeostasis. Glioblastoma stem cells (GSCs) increase thioredoxin (Trx) and glutathione (GSH) antioxidant systems as survival redox-adaptive mechanisms to maintain ROS below the cytotoxic threshold. Auranofin, an FDA-approved anti-rheumatoid drug, inhibits thioredoxin reductase 1 (TrxR1). L-buthionine sulfoximine (L-BSO) and the natural product piperlongumine (PPL) inhibit the GSH system. We evaluated the cytotoxic effects of Auranofin alone and in combination with L-BSO or PPL in GBM cell lines and GSCs with a known TP53 status. The Cancer Genome Atlas/GBM analysis revealed a significant positive correlation between wtp53 and TrxR1 expression in GBM. Auranofin induced ROS-dependent cytotoxicity within a micromolar range in GSCs. Auranofin decreased TrxR1 expression, AKT (Ser-473) phosphorylation, and increased p53, p21, and PARP-1 apoptotic cleavage in wtp53-GSCs, while mutant-p53 was decreased in a mutant-p53 GSC line. Additionally, p53-knockdown in a wtp53-GSC line decreased TrxR1 expression and significantly increased sensitivity to Auranofin, suggesting the role of wtp53 as a negative redox-sensitive mechanism in response to Auranofin in GSCs. The combination of Auranofin and L-BSO synergistically increased ROS, decreased IC50s, and induced long-term cytotoxicity irrespective of p53 in GBM cell lines and GSCs. Intriguingly, Auranofin increased the expression of glutathione S-transferase pi-1 (GSTP-1), a target of PPL. Combining Auranofin with PPL synergistically decreased IC50s to a nanomolar range in GSCs, supporting the potential to repurpose Auranofin and PPL in GBM. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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25. miRNA in Machine-Learning-Based Diagnostics of Oral Cancer.
- Author
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Li, Xinghang, Kouznetsova, Valentina L., and Tsigelny, Igor F.
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RECEIVER operating characteristic curves ,MACHINE learning ,EARLY detection of cancer ,GENE expression ,ORAL cancer - Abstract
Background: MicroRNAs (miRNAs) are crucial regulators of gene expression, playing significant roles in various cellular processes, including cancer pathogenesis. Traditional cancer diagnostic methods, such as biopsies and histopathological analyses, while effective, are invasive, costly, and require specialized skills. With the rising global incidence of cancer, there is a pressing need for more accessible and less invasive diagnostic alternatives. Objective: This research investigates the potential of machine-learning (ML) models based on miRNA attributes as non-invasive diagnostic tools for oral cancer. Methods and Tools: We utilized a comprehensive methodological framework involving the generation of miRNA attributes, including sequence characteristics, target gene associations, and cancer-specific signaling pathways. Results: The miRNAs were classified using various ML algorithms, with the BayesNet classifier demonstrating superior performance, achieving an accuracy of 95% and an area under receiver operating characteristic curve (AUC) of 0.98 during cross-validation. The model's effectiveness was further validated using independent datasets, confirming its potential clinical utility. Discussion: Our findings highlight the promise of miRNA-based ML models in enhancing early cancer detection, reducing healthcare burdens, and potentially saving lives. Conclusions: This study paves the way for future research into miRNA biomarkers, offering a scalable and adaptable diagnostic approach for various cancers. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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26. Photobacterium damselae subsp. damselae in Stranded Cetaceans: A 6-Year Monitoring of the Ligurian Sea in Italy.
- Author
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Battistini, Roberta, Masotti, Chiara, Giorda, Federica, Grattarola, Carla, Peletto, Simone, Testori, Camilla, Zoppi, Simona, Berio, Enrica, Crescio, Maria Ines, Pussini, Nicola, Serracca, Laura, and Casalone, Cristina
- Subjects
BOTTLENOSE dolphin ,MARINE animals ,MARINE bacteria ,POLYMERASE chain reaction ,CETACEA - Abstract
Simple Summary: Photobacterium damselae subsp. damselae (Pdd) is a marine bacterium that can infect a variety of marine animals and humans. Although this bacterium has been isolated from several stranded dolphins and whales, its pathogenic role in cetaceans is still unclear and very limited information exists on its occurrence in these animals. In this study, we report data relating to the presence of Pdd in marine mammals stranded within the Liguria Pelagos Sanctuary from 2017 to 2022. Our findings show a 41.5% (22/53) Pdd prevalence in stranded cetaceans, where 22.7% (5/22) of these were positive in at least one of the Pdd virulence factors which, in previous studies, have been related to Pdd pathogenicity. Our results also revealed that in all cases where cetaceans tested positive for Pdd, other well-known pathogens for these species were also present. This finding supports the hypothesis that Pdd is an opportunistic agent that might contribute to the worsening of health conditions in subjects already compromised by other pathogens, contributing to their death. However, further studies are necessary to investigate and deepen this hypothesis. Photobacterium damselae subsp. damselae (Pdd) is an increasingly common bacterium in post-mortem diagnostics of beached marine mammals, but little is known about its precise etiological responsibility. To estimate the prevalence of Pdd in stranded cetaceans from 2017 to 2022 on the Ligurian coast (Pelagos Sanctuary), we tested tissues from 53 stranded individuals belonging to four cetacean species. DNA extracts from cetacean tissue were screened using a polymerase chain reaction (PCR) assay targeting the Pdd ureC gene. Positive samples were screened by PCR for dly, hlyA
pl and hlyAch hemolysin genes, which were confirmed by sequencing. Twenty-two out of 53 (41.5%) cetaceans analyzed by PCR were confirmed for Pdd DNA in at least one tissue among those analyzed. Five of these cetaceans were positive for at least one of the hemolysin genes tested. In all Pdd-positive cetaceans, other pathogens that were considered responsible for the causa mortis of the animals were also found. The results provide new information on the spread of Pdd in cetaceans and support the thesis that Pdd might be an opportunistic agent that could contribute to worsening health conditions in subjects already compromised by other pathogens. However, further studies are needed to investigate and deepen this hypothesis. [ABSTRACT FROM AUTHOR]- Published
- 2024
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27. Monitoring estuarine fish communities: environmental DNA (eDNA) metabarcoding as a complement to beach seining.
- Author
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Saunders, Mark D., Steeves, Royce, MacIntyre, Leah P., Knysh, Kyle M., Coffin, Michael R.S., Boudreau, Monica, Pater, Christina C., van den Heuvel, Michael R., and Courtenay, Simon C.
- Subjects
FISH communities ,FISHING villages ,FISHERY management ,DNA ,ESTUARINE fishes - Abstract
Environmental deoxyribonucleic acid (eDNA) metabarcoding offers advantages over physical capture for identifying and quantifying animals in monitoring programs. In this study, the fish community was sampled at three stations (inner, middle, and outer estuary) in three estuaries in August 2020, and four estuaries in June and August 2021 (Prince Edward Island, Canada) using both beach seining and eDNA metabarcoding. Two 12S primer sets, 12S-160 and 12S-248F, with different amplicon lengths, yielded similar results. eDNA metabarcoding consistently detected species captured by 186 co-located beach seines and revealed additional species. It also detected monthly (June–August), interannual (2020–2021), and spatial shifts in the fish community, distinguishing stations separated by as little as 0.4 km. Positive correlations existed between eDNA metabarcoding species reads and beach seining captures. These findings suggest eDNA metabarcoding complements physical capture methods for characterizing nearshore fish communities in Prince Edward Island's estuaries. While eDNA techniques lack certain population parameter information provided by physical methods, such as size, sex, and age structure, they offer a more comprehensive diversity assessment and presence–abundance insights, especially in inaccessible environments. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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28. Variation in Root-Associated Microbial Communities among Three Different Plant Species in Natural Desert Ecosystem.
- Author
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Zhang, Yulin, Du, Yi, Zhang, Zhihao, Islam, Waqar, and Zeng, Fanjiang
- Subjects
DESERT plants ,MICROBIAL communities ,BACTERIAL diversity ,DESERTS ,ELECTRIC conductivity ,FUNGAL communities - Abstract
The process and function that underlie the assembly of root-associated microbiomes may be strongly linked to the survival strategy of plants. However, the assembly and functional changes of root-associated microbial communities in different desert plants in natural desert ecosystems are still unclear. Thus, we studied the microbial communities and diversity of root endosphere (RE), rhizosphere soil (RS), and bulk soil (BS) among three representative desert plants (Alhagi sparsifolia, Tamarix ramosissima, and Calligonum caput-medusae) in three Xinjiang desert regions {Taklimakan (CL), Gurbantünggüt (MSW), and Kumtag (TLF)} in China. This study found that the soil properties {electrical conductivity (EC), soil organic carbon (SOC), total nitrogen (TN) and phosphorus (TP), available nitrogen (AN) and phosphorus (AP)} of C. caput-medusae were significantly lower than those of A. sparsifolia and T. ramosissima, while the root nutrients (TN and TP) of A. sparsifolia were significantly higher compared to C. caput-medusae and T. ramosissima. The beta diversity of bacteria and fungi (RE) among the three desert plants was significantly different. The common OTU numbers of bacteria and fungi in three compartments (RE, RS, and BS) of the three desert plants were ranked as RS > BS > RE. The bacterial and fungal (RE) Shannon and Simpson indexes of C. caput-medusae were significantly lower as compared to those of A. sparsifolia and T. ramosissima. Additionally, bacterial and fungal (RE and RS) node numbers and average degree of C. caput-medusae were lower than those found in A. sparsifolia and T. ramosissima. Root and soil nutrients collectively contributed to the composition of root-associated bacterial (RE, 12.4%; RS, 10.6%; BS, 16.6%) and fungal communities (RE, 34.3%; RS, 1.5%; BS, 17.7%). These findings demonstrate variations in the bacterial and fungal populations across different plant species with distinct compartments (RE, RS, and BS) in arid environments. More importantly, the study highlights how much soil and plant nutrients contribute to root-associated microbial communities. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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29. The In Vivo Effect of Water-Based Lubricants on the Vaginal Microbiome of Women from Varying Age Groups: Exploratory Analysis of a Randomized Controlled Trial.
- Author
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Freixas-Coutin, Jose A., Seo, Jin, Hood, Sarah, Krychman, Michael, and Palacios, Santiago
- Subjects
VAGINAL dryness ,SEXUAL intercourse ,AGE groups ,BACTERIAL diversity ,HUMAN microbiota - Abstract
Vaginal mucosa undergoes physiological changes across the lifespan, such as increased pH and reduced natural lubrication which are known to impact vaginal commensal microorganisms, hence increasing the chances of vaginal infections. An improved understanding of vaginal microbiome composition in different age groups and the effect of social behaviors, such as the use of personal lubricants, could facilitate the development of new strategies to maintain good vaginal health. The objective of this study was to assess the effect of water-based lubricants on the human vaginal microbiome. Fifty females from three age groups (18–29, 30–44, and 45–65 years) with mild-to-moderate vaginal dryness were randomized to one of five lubricants (four of which were formulated to meet expert guidance on osmolality and pH). Subjects entered the study at tolerance or treatment phase (vaginal intercourse minimum once a week using assigned lubricant). Four vaginal swabs per participant were sampled during pre-("baseline"), post-first ("2 h", "24 h") and post-last ("4 weeks") lubricant application to assess bacterial and fungal diversity via amplicon sequencing. Vaginal pH and relative humidity were measured at baseline, 2 h, and 24 h post-lubricant application. Relative bacteriome abundance was statistically compared between timepoints for each lubricant group. Vaginal moisture, age, BMI, and pH were correlated with bacteriome relative abundance. Lactobacilli and Gardnerella sp. Were predominant across participants. Repeated lubricant application did not significantly alter the vaginal bacteriome during 4 weeks of product use (p > 0.05) when measured by relative abundance and alpha-diversity index. Bacteriome diversity and abundance differed significantly between age groups at baseline whereas lactobacilli relative abundance was negatively associated with age and vaginal pH. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
30. Large-Scale Sampling Reveals the Strain-Level Diversity of Burkholderia Symbionts in Riptortus pedestris and R. linearis (Hemiptera: Alydidae).
- Author
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Hou, Xin-Rui, Fu, Si-Ying, Wang, Yuan, Zhou, Jia-Yue, Qi, Tian-Yi, Li, Yan-Fei, Bu, Wen-Jun, and Xue, Huai-Jun
- Subjects
BURKHOLDERIA ,GENETIC distance ,STINKBUGS ,MICROBIAL communities ,HEMIPTERA - Abstract
Burkholderia (sensu lato) is a diverse group of β-Proteobacteria that exists worldwide in various environments. The SBE clade of this group was thought to be mutualistic with stinkbugs. Riptortus–Burkholderia was suggested as an ideal model system for studying insect–microbe symbiosis. To explore the strain-level diversity of Burkholderia at the individual and population levels of Riptortus stinkbugs (Hemiptera: Alydidae), and to uncover the factors affecting the Burkholderia community, large-scale sampling of two Riptortus species and deep sequencing data (16S amplicon) were used in the present study. Our results showed that: (1) the proportions of facultative symbiotic bacteria Burkholderia were very high, with an average proportion of 87.1% in the samples; (2) only six out of 1373 Burkholderia amplicon sequence variants (ASVs) did not belong to the SBE clade, accounting for only 0.03% of Burkholderia; (3) a relatively small number of Burkholderia ASVs had a large number of sequences, with 22, 54, and 107 ASVs accounting for more than 1.0%, 0.1%, and 0.01% of the total Burkholderia sequences, respectively; (4) multiple Burkholderia ASVs were present in most Riptortus individuals, but there was one dominant or two codominant ASVs, and codominance was more likely to occur when the genetic distance between the two codominant ASVs was small; and (5) the beta diversity of Burkholderia was significantly different between the two host species (PerMANOVA: both Jaccard and Bray–Curtis, p < 0.001) and among localities (PerMANOVA: both Jaccard and Bray–Curtis, p < 0.001). Two-way PerMANOVA also indicated that both the host (Bray–Curtis, p = 0.020; Jaccard, p = 0.001) and geographical location (Bray–Curtis, p = 0.041; Jaccard, p = 0.045) influence Burkholderia communities; furthermore, Mantel tests showed that the Burkholderia communities were significantly correlated with the geographical distance of sample locations (R = 0.056, p = 0.001). Together, our findings demonstrate the fine-scale diversity of Burkholderia symbionts and suggest a region- and host-dependent pattern of Burkholderia in Riptortus stinkbugs. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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- View/download PDF
31. Temporal Shifts in Flower-Visiting Butterfly Communities and Their Floral Resources along a Vegetation Type Altered by Anthropogenic Factors.
- Author
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López-Vázquez, Karla, Lara, Carlos, Corcuera, Pablo, and Castillo-Guevara, Citlalli
- Subjects
RESOURCE availability (Ecology) ,ANTHROPOGENIC effects on nature ,AGRICULTURE ,PLANT diversity ,HOST plants ,FOREST dynamics ,HABITAT modification ,EUCALYPTUS - Abstract
Habitat disturbance driven by human activities poses a major threat to biodiversity and can disrupt ecological interactions. Butterfly–plant mutualisms represent an ideal model system to study such anthropogenic impacts, as butterflies exhibit intimate dependencies on larval host plants and adult nectar sources, rendering them highly sensitive to habitat changes affecting the availability of these floral resources. This study examined flower-visiting butterfly communities and their associations with flowering plants in a landscape altered by anthropogenic factors in central Mexico. The study area encompassed a mosaic of vegetation types, including native juniper forests, agricultural lands, and introduced eucalyptus plantations, representing different degrees of human-induced habitat modification. Monthly surveys were conducted over a single year, covering both rainy and dry seasons, to analyze butterfly and plant diversity, community composition, and interactions. Results showed the highest diversity in juniper forests, followed by eucalyptus and agricultural sites. Seasonal turnover was the primary driver of community changes, with habitat-based segregation persisting within seasons. Butterfly diversity strongly correlated with flower abundance, while plant richness played a secondary role. SIMPER and indicator species analyses identified key taxa contributing to compositional dissimilarities among habitats and associated with specific vegetation types and seasons. Our research provides insights into temporal dynamics structuring butterfly–plant interactions across this forest disturbance spectrum, highlighting how habitat changes and seasonality shape these mutualistic communities in changing landscapes. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
32. 'That student ignored me': Exploring social anxiety as a predictor of perceived student ostracism.
- Author
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Meisuria, Ridhi, Waldeck, Daniel, Leggett, Rachael, and Brooker, Katie
- Subjects
SOCIAL anxiety ,HIGHER education ,STUDENT attitudes ,UNDERGRADUATES ,INTERNET surveys - Abstract
Being ostracised (i.e. ignored and excluded) by others can be painful and distressing. Certain individual differences (e.g. social anxiety) are known to exacerbate the negative psychological consequences of ostracism. However, little empirical research has investigated who (e.g. those with social anxiety) is most likely to feel ostracised by their peers in higher education. The present study recruited 84 undergraduate students who completed an online survey measuring social anxiety (predictor variable) and perceived student ostracism (outcome variable). The results showed that after controlling for age, there was a significant positive relationship between social anxiety and perceived student ostracism. Implications for the way that educators promote social inclusion, particularly for those with social anxiety, within higher education are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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33. 3,6-Dipyridyl-1,2,4,5-tetrazine in the Synthesis of Zinc and Cadmium Metal-Organic Frameworks with Anilate-Type Ligands.
- Author
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Trofimova, O. Yu., Kolevatov, D. S., Druzhkov, N. O., Maleeva, A. V., Yakushev, I. A., Dorovatovskii, P. V., and Piskunov, A. V.
- Subjects
METAL-organic frameworks ,X-ray diffraction ,LIGANDS (Chemistry) ,THERMAL stability ,CADMIUM - Abstract
New heteroleptic metal-organic frameworks (MOF) of zinc (3D MOF) and cadmium (2D MOF) are prepared by the two-stage synthesis: [Zn(pQ)(DPT)]·2DMF (I) and [Cd
2 (NO3 )2 -(pQ)(DPT)3 ]·2DMF·2MeOH (II), where pQ is the 2,5-dihydroxy-3,6-di-tert-butyl-para-benzoquinone dianion, DPT is 3,6-di(pyridin-4-yl)-1,2,4,5-tetrazine, and DMF is N,N-dimethylformamide (DMF). The structures of the compounds are studied by XRD (CIF files CCDC nos. 2332754 (I) and 2332755 (II)). The thermal stability of the MOF is studied by thermogravimetry. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
34. A Numerical Approach to Analyzing Shallow Flows over Rough Surfaces.
- Author
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Chowdhury, M. Nasimul, Khan, Abdul A., and Castro-Orgaz, Oscar
- Subjects
SHEARING force ,ROUGH surfaces ,TURBULENT flow ,FROUDE number ,TURBULENCE - Abstract
The hydraulic characteristics (such as velocity profiles, near-bed velocity profile, bed shear stress, and resistance coefficients) of shallow flows over rough surfaces were investigated using numerical simulations. A novel method is presented to simulate shallow flows over rough surfaces in a two-dimensional (2D) numerical domain, where the physical numerical domain represents bed topography. Results reveal that the model can accurately predict spatially averaged velocity profiles, turbulence characteristics, shear stresses, and uniform flow depths. The analysis identified two distinct flow regions based on mean and turbulent flow profiles. Results show that the turbulent shear stress profiles provide a more accurate estimation of the bed shear stresses. Resistance coefficients (friction factor or Manning's roughness coefficient) vary with Froude number and submergence ratio (depth divided by roughness height). [ABSTRACT FROM AUTHOR]
- Published
- 2024
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- View/download PDF
35. Review about the Permutation Approach in Hypothesis Testing.
- Author
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Bonnini, Stefano, Assegie, Getnet Melak, and Trzcinska, Kamila
- Subjects
INFERENTIAL statistics ,REGRESSION analysis ,TEST methods ,RESEARCH personnel ,PERMUTATIONS - Abstract
Today, permutation tests represent a powerful and increasingly widespread tool of statistical inference for hypothesis-testing problems. To the best of our knowledge, a review of the application of permutation tests for complex data in practical data analysis for hypothesis testing is missing. In particular, it is essential to review the application of permutation tests in two-sample or multi-sample problems and in regression analysis. The aim of this paper is to consider the main scientific contributions on the subject of permutation methods for hypothesis testing in the mentioned fields. Notes on their use to address the problem of missing data and, in particular, right-censored data, will also be included. This review also tries to highlight the limits and advantages of the works cited with a critical eye and also to provide practical indications to researchers and practitioners who need to identify flexible and distribution-free solutions for the most disparate hypothesis-testing problems. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
36. Analysis of the Raccoon (Procyon lotor) and Common Raccoon Dog (Nyctereutes procyonoides) Spatiotemporal Changes Based on Hunting Bag Data in Hungary.
- Author
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Schally, Gergely, Bijl, Hanna, Kashyap, Bhraaz, Márton, Mihály, Bőti, Szilvia, Katona, Krisztián, Biró, Zsolt, Heltai, Miklós, and Csányi, Sándor
- Subjects
INTRODUCED species ,RACCOON dog ,WILDLIFE management ,GRIDS (Cartography) ,GRID cells - Abstract
Sustainable wildlife management requires reliable data on population, habitat, and the interaction between them. Since 1993, Hungary has maintained the National Game Management Database, which collects data on game populations and hunting bags annually. During the last three decades, populations of medium-sized predators have remarkably increased in the country. Our study analyzed changes in hunting bag data and spatial distribution of two invasive alien species, the raccoon (Procyon lotor) and the raccoon dog (Nyctereutes procyonoides), utilizing annual game management reports from Game Management Units from 1997 to 2021. For spatial analysis, we employed a UTM grid system (10 × 10 km) covering the country. Our findings confirmed increasing trends in the hunting bag and area (number of grid cells) containing hunting bags for both species. From the first (1997–2001) to the last (2017–2021) period, the average annual hunting bag increased (raccoon: 0.40 → 11.00 ind/year; raccoon dog: 3.40 → 8.00 ind/year), and the average number of cells with hunting bags also expanded significantly (raccoon: 2.00 → 9.60 UTM cells/year; raccoon dog: 5.80 → 15.20 UTM cells/year). These trends and the size of potentially suitable habitats suggest a further spread and population increase, posing challenges for nature conservationists and wildlife managers. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
37. An Analysis of Changes in the Harmfulness of the Bottle Packaging Process Depending on the Type of Heat-Shrinkable Film.
- Author
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Walichnowska, Patrycja, Kruszelnicka, Weronika, Mazurkiewicz, Adam, Kłos, Zbigniew, Rudawska, Anna, and Bembenek, Michał
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PRODUCT life cycle assessment ,POLYETHYLENE films ,PACKAGING ,BOTTLES ,ECOSYSTEMS - Abstract
This article shows an analysis of selected stages of a machine's life cycle environmental impact in the specific case of machines that package bottles in thermo-shrinkable film. As part of this analysis, laboratory tests were carried out to compare the performance properties of polyethylene films (with and without recycled material). Then, a life cycle assessment (LCA) was carried out within the specified system boundaries using the SimaPro program. Using the ReCiPe 2016 method, differences in the impact of the mass bottle packaging process on the categories human health, ecosystems and resources were determined depending on the shrink film used in the process. These tests showed that the tested batch of film with the addition of recyclates has similar functional properties to traditional ones and can therefore be used in the mass packaging process. The environmental analysis showed that changing the type of film to film with the addition of recyclates results in an almost 70% reduction in the potential negative impact of the process in terms of damage to health and ecosystems, and by 85% in terms of resources. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
38. Personalized Nutrition: Tailoring Dietary Recommendations through Genetic Insights.
- Author
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Singar, Saiful, Nagpal, Ravinder, Arjmandi, Bahram H., and Akhavan, Neda S.
- Abstract
Personalized nutrition (PN) represents a transformative approach in dietary science, where individual genetic profiles guide tailored dietary recommendations, thereby optimizing health outcomes and managing chronic diseases more effectively. This review synthesizes key aspects of PN, emphasizing the genetic basis of dietary responses, contemporary research, and practical applications. We explore how individual genetic differences influence dietary metabolisms, thus underscoring the importance of nutrigenomics in developing personalized dietary guidelines. Current research in PN highlights significant gene–diet interactions that affect various conditions, including obesity and diabetes, suggesting that dietary interventions could be more precise and beneficial if they are customized to genetic profiles. Moreover, we discuss practical implementations of PN, including technological advancements in genetic testing that enable real-time dietary customization. Looking forward, this review identifies the robust integration of bioinformatics and genomics as critical for advancing PN. We advocate for multidisciplinary research to overcome current challenges, such as data privacy and ethical concerns associated with genetic testing. The future of PN lies in broader adoption across health and wellness sectors, promising significant advancements in public health and personalized medicine. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
39. Opioid-Free Using Ketamine versus Opioid-Sparing Anesthesia during the Intraoperative Period in Video-Assisted Thoracoscopic Surgery: A Randomized Controlled Trial.
- Author
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Choi, Hoon, Huh, Jaewon, Kim, Minju, Moon, Seok Whan, Kim, Kyung Soo, and Hwang, Wonjung
- Subjects
INTRAOPERATIVE awareness ,VISUAL analog scale ,RANDOMIZED controlled trials ,POSTOPERATIVE pain ,KETAMINE - Abstract
Opioids effectively manage perioperative pain but have numerous adverse effects. Opioid-free anesthesia (OFA) eliminates intraoperative opioid use; however, evidence for its use in video-assisted thoracoscopic surgery (VATS) is limited. This study assessed the effect of OFA using ketamine in VATS patients compared to opioid-sparing anesthesia (OSA). A total of 91 patients undergoing VATS lobectomy or segmentectomy were randomized to either the OFA group (ketamine) or the OSA group (remifentanil). The primary outcome was the quality of recovery (QoR) on postoperative day (POD) 1, measured with the QoR-40 questionnaire. Secondary outcomes included postoperative pain scores and adverse events. Both groups had comparable baseline and surgical characteristics. On POD 1, the QoR-40 score was higher in the OFA group than in the OSA group (164.3 ± 10.8 vs. 158.7 ± 10.6; mean difference: 5.6, 95% CI: 1.1, 10.0; p = 0.015), though this did not meet the pre-specified minimal clinically important difference of 6.3. The visual analog scale score was lower in the OFA group as compared to the OSA group at 0–1 h (4.2 ± 2.3 vs. 6.2 ± 2.1; p < 0.001) and 1–4 h after surgery (3.4 ± 1.8 vs. 4.6 ± 1.9; p = 0.003). The OFA group had a lower incidence of PONV (2 [4.4%] vs. 9 [19.6%]; p = 0.049) and postoperative shivering (4 [8.9%] vs. 13 [28.3%]; p = 0.030) than the OSA group at 0–1 h after surgery. Using OFA with ketamine proved feasible, as indicated by the stable intraoperative hemodynamics and absence of intraoperative awareness. Patients undergoing VATS with OFA using ketamine showed a statistically significant, but clinically insignificant, QoR improvement compared to those receiving OSA with remifentanil. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
40. Morphology, Internal Architecture, Facies Model, and Emplacement Mechanisms of Lava Flows from the Central Atlantic Magmatic Province (CAMP) of the Hartford and Deerfield Basins (USA).
- Author
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Moumou, Abdelhak, Youbi, Nasrrddine, El Hachimi, Hind, El Kadiri, Khalil, Madeira, José, Mata, João, Amri, Isma, and Ait Baha, Abdelkarim
- Subjects
FLOOD basalts ,VOLCANOLOGY ,BASALT ,FACIES ,LAVA - Abstract
The morphology, internal architecture, and emplacement mechanisms of the Central Atlantic Magmatic Province (CAMP) lava flows of the Hartford and Deerfield basins (USA) are presented. The Talcott, Holyoke, and Hampden formations within the Hartford basin constitute distinct basaltic units, each exhibiting chemical, mineralogical, and structural differences corresponding to flow fields. Each flow field was the result of several sustained eruptions that produced both inflated pahoehoe flows and subaquatic extrusions: 1–5 eruptions in the Talcott formation and 1–2 in Holyoke and Hampden basalts, where simple flows are dominant. The Deerfield basin displays the Deerfield basalt unit, characterized by pillow lavas and sheet lobes, aligning chemically and mineralogically with the Holyoke basalt unit. Overall, the studied flow fields are composed of thick, simple pahoehoe flows that display the entire range of pahoehoe morphology, including inflated lobes. The three-partite structure of sheet lobes, vertical distribution of vesicles, and segregation structures are typical. The characteristics of the volcanic pile suggest slow emplacement during sustained eruptive episodes and are compatible with a continental basaltic succession facies model. The studied CAMP basalts of the eastern United States are correlated with the well-exposed examples on both sides of the Atlantic Ocean (Canada, Portugal, and Morocco). [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
41. Perineural Invasion in Cervical Cancer: A Hidden Trail for Metastasis.
- Author
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Chen, Guoqiang, Sun, Hao, Chen, Yunxia, Wang, Li, Song, Ouyi, Zhang, Jili, Li, Dazhi, Liu, Xiaojun, and Feng, Lixia
- Subjects
CERVICAL cancer ,SCHWANN cells ,CANCER patients ,ONCOLOGIC surgery ,INNERVATION - Abstract
Perineural invasion (PNI), the neoplastic invasion of nerves, is an often overlooked pathological phenomenon in cervical cancer that is associated with poor clinical outcomes. The occurrence of PNI in cervical cancer patients has limited the promotion of Type C1 surgery. Preoperative prediction of the PNI can help identify suitable patients for Type C1 surgery. However, there is a lack of appropriate preoperative diagnostic methods for PNI, and its pathogenesis remains largely unknown. Here, we dissect the neural innervation of the cervix, analyze the molecular mechanisms underlying the occurrence of PNI, and explore suitable preoperative diagnostic methods for PNI to advance the identification and treatment of this ominous cancer phenotype. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
42. Cardiomyopathy in Duchenne Muscular Dystrophy and the Potential for Mitochondrial Therapeutics to Improve Treatment Response.
- Author
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Gandhi, Shivam, Sweeney, H. Lee, Hart, Cora C., Han, Renzhi, and Perry, Christopher G. R.
- Subjects
DUCHENNE muscular dystrophy ,MYOCARDIUM ,DYSTROPHIN genes ,REACTIVE oxygen species ,NEUROMUSCULAR diseases - Abstract
Duchenne muscular dystrophy (DMD) is a progressive neuromuscular disease caused by mutations to the dystrophin gene, resulting in deficiency of dystrophin protein, loss of myofiber integrity in skeletal and cardiac muscle, and eventual cell death and replacement with fibrotic tissue. Pathologic cardiac manifestations occur in nearly every DMD patient, with the development of cardiomyopathy—the leading cause of death—inevitable by adulthood. As early cardiac abnormalities are difficult to detect, timely diagnosis and appropriate treatment modalities remain a challenge. There is no cure for DMD; treatment is aimed at delaying disease progression and alleviating symptoms. A comprehensive understanding of the pathophysiological mechanisms is crucial to the development of targeted treatments. While established hypotheses of underlying mechanisms include sarcolemmal weakening, upregulation of pro-inflammatory cytokines, and perturbed ion homeostasis, mitochondrial dysfunction is thought to be a potential key contributor. Several experimental compounds targeting the skeletal muscle pathology of DMD are in development, but the effects of such agents on cardiac function remain unclear. The synergistic integration of small molecule- and gene-target-based drugs with metabolic-, immune-, or ion balance-enhancing compounds into a combinatorial therapy offers potential for treating dystrophin deficiency-induced cardiomyopathy, making it crucial to understand the underlying mechanisms driving the disorder. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
43. Prognostic and Therapeutic Implications of Cell Division Cycle 20 Homolog in Breast Cancer.
- Author
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Messeha, Samia S., Zarmouh, Najla O., Maku, Henrietta, Gendy, Sherif, Yedjou, Clement G., Elhag, Rashid, Latinwo, Lekan, Odewumi, Caroline, and Soliman, Karam F. A.
- Subjects
BREAST cancer prognosis ,ENZYME analysis ,RISK assessment ,STATISTICAL correlation ,DRUG resistance in cancer cells ,T cells ,RESEARCH funding ,BREAST tumors ,CELL physiology ,IMMUNE system ,CELL cycle ,TUMOR markers ,DESCRIPTIVE statistics ,METASTASIS ,GENES ,ONCOGENES ,RESEARCH ,PACLITAXEL ,COMPARATIVE studies ,IMMUNOMODULATORS ,DENDRITIC cells - Abstract
Simple Summary: In breast cancer (BC), the triple-negative breast cancer subtype, the upregulation of CDC20 is positively associated with cancer initiation, progression, metastasis, and chemotherapy resistance. The current functional enrichment analysis study demonstrated the significant association of CDC20 co-expressed genes with biological regulation and cellular processes. This study reveals a significant positive correlation between overexpressed CDC20 and tumor purity and many immune cells; the finding suggests that CDC20 plays a fundamental role in controlling tumor immunity and consequently influences BC prognosis. CDC20 deficiency led to decreased cell growth and metastasis, G2/M cell cycle arrest, and boosted the cytotoxic effects of paclitaxel treatment, which supports the current analysis. Developing natural and synthetic inhibitors of this oncogene is a promising approach to the therapeutic management of BC. Cell division cycle 20 homolog (CDC20) is a well-known regulator of cell cycle progression. Abnormal expression of CDC20 leads to mitotic defects, which play a significant role in cancer development. In breast cancer (BC), CDC20 has been identified as a biomarker that has been linked to poor patient outcomes. In this study, we investigated the association of CDC20 with BC prognosis and immune cell infiltration by using multiple online databases, including UALCAN, KM plotter, TIMER2.0, HPA, TNM-plot, bc-GenExMiner, LinkedOmics, STRING, and GEPIA. The results demonstrate that BC patients have an elevated CDC20 expression in tumor tissues compared with the adjacent normal tissue. In addition, BC patients with overexpressed CDC20 had a median survival of 63.6 months compared to 169.2 months in patients with low CDC20 expression. Prognostic analysis of the examined data indicated that elevated expression of CDC20 was associated with poor prognosis and a reduction of overall survival in BC patients. These findings were even more prevalent in chemoresistance triple-negative breast cancer (TNBC) patients. Furthermore, the Gene Set Enrichment Analysis tool indicated that CDC20 regulates BC cells' cell cycle and apoptosis. CDC20 also significantly correlates with increased infiltrating B cells, CD4+ T cells, neutrophils, and dendritic cells in BC. In conclusion, the findings of this study suggest that CDC20 may be involved in immunomodulating the tumor microenvironment and provide evidence that CDC20 inhibition may serve as a potential therapeutic approach for the treatment of BC patients. In addition, the data indicates that CDC20 can be a reliable prognostic biomarker for BC. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
44. Pharmacological Treatments and Therapeutic Targets in Muscle Dystrophies Generated by Alterations in Dystrophin-Associated Proteins.
- Author
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Luna-Angulo, Alexandra, Landa-Solís, Carlos, Escobar-Cedillo, Rosa Elena, Estrada-Mena, Francisco Javier, Sánchez-Chapul, Laura, Gómez-Díaz, Benjamín, Carrillo-Mora, Paul, Avilés-Arnaut, Hamlet, Jiménez-Hernández, Livier, Jiménez-Hernández, Dulce Adeí, and Miranda-Duarte, Antonio
- Subjects
DRUG therapy ,DRUG target ,MUSCULAR dystrophy ,MUSCLE weakness ,DYSTROPHY ,SKELETAL muscle injuries - Abstract
Muscular dystrophies (MDs) are a heterogeneous group of diseases of genetic origin characterized by progressive skeletal muscle degeneration and weakness. There are several types of MDs, varying in terms of age of onset, severity, and pattern of the affected muscles. However, all of them worsen over time, and many patients will eventually lose their ability to walk. In addition to skeletal muscle effects, patients with MDs may present cardiac and respiratory disorders, generating complications that could lead to death. Interdisciplinary management is required to improve the surveillance and quality of life of patients with an MD. At present, pharmacological therapy is only available for Duchene muscular dystrophy (DMD)—the most common type of MD—and is mainly based on the use of corticosteroids. Other MDs caused by alterations in dystrophin-associated proteins (DAPs) are less frequent but represent an important group within these diseases. Pharmacological alternatives with clinical potential in patients with MDs and other proteins associated with dystrophin have been scarcely explored. This review focuses on drugs and molecules that have shown beneficial effects, mainly in experimental models involving alterations in DAPs. The mechanisms associated with the effects leading to promising results regarding the recovery or maintenance of muscle strength and reduction in fibrosis in the less-common MDs (i.e., with respect to DMD) are explored, and other therapeutic targets that could contribute to maintaining the homeostasis of muscle fibers, involving different pathways, such as calcium regulation, hypertrophy, and maintenance of satellite cell function, are also examined. It is possible that some of the drugs explored here could be used to affordably improve the muscular function of patients until a definitive treatment for MDs is developed. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
45. Diversity Analysis of Fungi Distributed in Inhalable and Respirable Size Fractions of Aerosols: A Report from Kuwait.
- Author
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Habibi, Nazima, Uddin, Saif, Behbehani, Montaha, Kishk, Mohammad, Khan, Mohd. Wasif, and Al-Fouzan, Wadha A.
- Subjects
PATHOGENIC fungi ,INDUSTRIAL hygiene ,DUST storms ,OCCUPATIONAL hazards ,AIR sampling apparatus - Abstract
Fungi are an important part of the atmospheric ecosystem yet an underexplored group. Airborne pathogenic fungi are the root cause of hypersensitive and allergenic states highly prevalent in Kuwait. Frequent dust storms in the region carry them further into the urban areas, posing an occupational health hazard. The fungal population associated with the respirable (more than 2.5 µm) and inhalable (2.5 µm and less) fractions of aerosols is negligibly explored and warrants comprehensive profiling to pinpoint tAhe health implications. For the present investigation, aerosol was collected using a high-volume air sampler coupled with a six-stage cascade impactor (Tisch Environmental, Inc) at a rate of 566 L min
−1 . The samples were lysed, DNA was extracted, and the internal transcribed regions were sequenced through targeted amplicon sequencing. Aspergillus, Penicillium, Alternaria, Cladosporium, Fusarium, Gleotinia and Cryptococcus were recorded in all the size fractions with mean relative abundances (RA%) of 17.5%, 12.9%, 12.9%, 4.85%, 4.08%, 2.77%, and 2.51%, respectively. A weak community structure was associated with each size fraction (ANOSIM r2 = 0.11; p > 0.05). The Shannon and Simpson indices also varied among the respirable and inhalable aerosols. About 24 genera were significantly differentially abundant, as described through the Wilcoxon rank sum test (p < 0.05). The fungal microbiome existed as a complex lattice of networks exhibiting both positive and negative correlations and were involved in 428 functions. All the predominant genera were pathogenic, hence, their presence in inhalable fractions raises concerns and poses an occupational exposure risk to both human and non-human biota. Moreover, long-range transport of these fungi to urban locations is undesirable yet plausible. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
46. Limb Girdle Muscular Dystrophy Type 2B (LGMD2B): Diagnosis and Therapeutic Possibilities.
- Author
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Poudel, Bal Hari, Fletcher, Sue, Wilton, Steve D., and Aung-Htut, May
- Subjects
MUSCULAR dystrophy ,DIAGNOSIS ,VIRAL genes ,GENE therapy ,MEMBRANE proteins ,DNA repair - Abstract
Dysferlin is a large transmembrane protein involved in critical cellular processes including membrane repair and vesicle fusion. Mutations in the dysferlin gene (DYSF) can result in rare forms of muscular dystrophy; Miyoshi myopathy; limb girdle muscular dystrophy type 2B (LGMD2B); and distal myopathy. These conditions are collectively known as dysferlinopathies and are caused by more than 600 mutations that have been identified across the DYSF gene to date. In this review, we discuss the key molecular and clinical features of LGMD2B, the causative gene DYSF, and the associated dysferlin protein structure. We also provide an update on current approaches to LGMD2B diagnosis and advances in drug development, including splice switching antisense oligonucleotides. We give a brief update on clinical trials involving adeno-associated viral gene therapy and the current progress on CRISPR/Cas9 mediated therapy for LGMD2B, and then conclude by discussing the prospects of antisense oligomer-based intervention to treat selected mutations causing dysferlinopathies. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
47. Microbiota Analysis of Ejaculated Honey Bee Drone Semen and the Effect of Semen Collection Method on Bacterial Loads.
- Author
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Yániz, Jesús, Toquet, Marion, Santolaria, Pilar, Silvestre, Miguel Angel, Toledo-Perona, Raquel, and Gómez-Martín, Ángel
- Subjects
HONEYBEES ,SEMEN ,POLLINATORS ,SEMINAL vesicles ,ARTIFICIAL insemination ,NUCLEOTIDE sequencing ,INFECTIOUS disease transmission ,ZIKA virus - Abstract
Simple Summary: A bacterial presence in semen may reduce sperm viability and increase the risk of infection transmission to the queen after artificial insemination in honey bees. The aims of this study were to characterize and compare the microbiota of honey bee drone semen from different locations and to determine the effect of semen collection method on bacterial loads. The results of the microbial composition analyses were described, showing differences between apiaries and colonies in the composition and abundance of the seminal microbiota. The collection method had a great impact on the degree of the bacterial loads of semen samples, with the traditional ejaculation method more favorable than the collection of semen from the seminal vesicles. Artificial insemination in queen honey bees is the only tool that provides complete control over mating for research and breeding purposes, making it essential in genetic improvement and conservation programs in this species. The aims of this study were to characterize drone semen bacterial loads by culture-dependent and independent methods and to describe their variation depending on the method of semen collection, the colony and the apiary. In the first experiment, the bacterial loads of semen collected from the seminal vesicles or from ejaculates was studied using culture-dependent methods. The collection method had a significant influence on the overall bacterial count in semen. Out of the 42 semen samples analyzed, 26 (61.9%) tested positive for bacterial isolation. This encompassed the entirety of samples obtained from the seminal vesicles (21 of 21), whereas only 23.8% of those derived from ejaculates (5 out of 21) showed bacterial isolation. In the second experiment, next-generation sequencing techniques were used to describe the microbiome of ejaculated drone semen for the first time. The most abundant phyla were Proteobacteria, Firmicutes, Bacteroidota and Actinobacteriota, while the most abundant genera were Lactobacillus, Staphylococcus, Prevotella, Alloprevotella and Streptococcus. The results showed that the apiary had a significant effect on the community structure composition and abundance of the seminal microbiota, and significative differences in abundance were observed for the genera Sphingomonas, Methylobacterium-Methylorubrum, Bifidobacterium and Alloprevotella. Significant differences were also observed in the richness of the microbiota between apiaries and colonies. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
48. Impact of Biosolids-Derived Biochar on the Remediation and Ecotoxicity of Diesel-Impacted Soil.
- Author
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Dike, Charles Chinyere, Krohn, Christian, Khudur, Leadin S., Batra, Alka Rani, Nnorom, Mac-Anthony, Surapaneni, Aravind, Shah, Kalpit, and Ball, Andrew S.
- Subjects
BIOCHAR ,SOIL remediation ,BACTERIAL communities ,SODIUM azide ,SOILS - Abstract
This study aimed to investigate the impact of biosolids-derived biochar on the remediation of Australian soil contaminated with diesel while investigating the role of biochar in the remediation. To achieve the latter aim, sodium azide (NaN
3 ) was added to a separate biochar treatment (BN) to alter the bacterial community structure. Biochar (B) reduced detectable hydrocarbons by 2353 mg/kg compared to the control (C) treatment at week 24. However, the BN treatment reduced the hydrocarbon concentration by 3827 and 6180 mg/kg, relative to B and C, respectively. Soil toxicity significantly decreased at week 24 compared to the start of the remediation in B, but not in the control. Biochar and control treatments generally showed a similar bacterial community structure throughout the incubation, while the bacterial community structure in BN differed significantly. Biodegradation was found to play a significant role in hydrocarbon removal, as the variation in the bacteria community coincided with differences in hydrocarbon removal between B and BN. The increased removal of hydrocarbons in the BN treatment relative to B coincided with increased and reduced relative abundances of Gordonia and JG30-KF-CM45 genera, respectively. This study showed that NaN3 led to a transient and selective inhibition of bacteria. This study makes an important contribution towards understanding the use of NaN3 in examining the role of biochar in the remediation of diesel-contaminated soil. Overall, we conclude that biochar has the potential to enhance the remediation of diesel-contaminated soil and that biodegradation is the dominant mechanism. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
49. Spatial Dynamics of Demersal Fish Assemblages off the Korean Coast in the East Sea.
- Author
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Park, Joo Myun, Lee, Chung Il, Park, Jong Won, Jung, Hae Kun, and Han, In Seong
- Subjects
SEASONAL temperature variations ,GILLNETTING ,OCEAN currents ,CODFISH ,FISH populations ,COASTS - Abstract
Simple Summary: This study investigated how different fish species are distributed in the sea based on where they are relative to the oceanic current region and how deep the water is. Researchers collected fish samples over four seasons from May 2018 to March 2019 along the coasts of the East Sea in Korea. They used special commercial gill nets to catch the fish at different depths, ranging from shallow to deeper waters. Overall, they found 73 different fish species and collected over 6000 specimens. Depending on the oceanic current region, they found different fish species in each study site. For example, in one area called Ayajin, they mostly found fish like blackfin flounder (Glyptocephalus stelleri), Pacific cod (Gadus macrocephalus) and mailclad sculpin (Icelus cataphractus). In another area called Hupo, different fish species were more common, such as blackfin flounder, Sohachi flounder (Cleisthenes pinetorum), and flathead flounder (Hippoglossoides dubius). The researchers also noticed that the types of fish varied depending on how deep the water was. This study helps us understand how fish populations change in different parts of the sea based on the oceanic current region and at different depths. This study assessed variations in demersal fish assemblages with respect to the study site and water depth. Seasonal samplings from May 2018 to March 2019 were conducted along the northern (Ayajin, Goseong) and southern (Hupo, Uljin) sites of the East Sea off the Korean coast, using commercial gill nets. Samples were collected at depths of ~50, ~80, ~150 m across the study sites, with concurrent monitoring of water column structures. A total of 73 species and 6250 specimens were collected. Distinctive fish species compositions were observed according to the study site and depth. Although Glyptocephalus stelleri was the most abundant fish species in both Ayajin and Hupo, Gadus macrocephalus, Icelus cataphractus, and Alcichthys elongatus were most predominant in Ayajin, whereas Cleisthenes pinetorum, Hippoglossoides dubius, and Gymnocanthus herzensteini were more prevalent in Hupo. In terms of depth layer, in Ayajin, G. stelleri dominated in both intermediate and deeper layers, with Hemilepidotus gilberti, A. elongatus, Enophrys diceraus common in shallower depths. Conversely, in Hupo, G. stelleri, C. pinetorum, and A. nadeshnyi dominated across all depth layers, whereas Dasycottus setiger and G. herzensteini dominated in deeper and shallower depths, respectively. Significant influences of the study site and water depth on fish assemblage structures were observed due to variations in water temperature at the seasonal thermocline boundary. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
50. Osteology of the appendicular skeleton of Bagualia alba (Dinosauria, Eusauropoda) from the Lower Jurassic of Patagonia and the macroevolutionary history of early eusauropods.
- Author
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Gomez KL, Pol D, Ezcurra MD, and Carballido JL
- Subjects
- Animals, Argentina, Bone and Bones anatomy & histology, Osteology, Dinosaurs anatomy & histology, Dinosaurs classification, Fossils anatomy & histology, Biological Evolution, Phylogeny
- Abstract
Since their origin, sauropodomorphs have undergone numerous anatomical changes from small and bipedal early sauropodomorphs towards massive-bodied and quadrupedal sauropods. However, the timing of these changes in the evolution of the group is unclear. Here, we describe the appendicular skeleton of the early diverging eusauropod Bagualia alba from the late Early Jurassic of Patagonia, Argentina, and conduct a morphological disparity analysis based on a phylogenetic dataset of Sauropoda. The results reveal a change in morphospace occupation between the pre-Toarcian and Toarcian-Middle Jurassic sauropodomorphs and between the latter and Late Jurassic forms. The first shift corresponds with the extinction of non-sauropodan sauropodomorphs and the diversification of sauropods, while the second corresponds with the diversification of Neosauropoda and closely related eusauropods (mamenchisaurids, turiasaurians) in the Late Jurassic, leading to a substantial shift and increase in morphological disparity. Finally, we found that body mass is significantly correlated with the first principal coordinate axis of the morphospace in two-thirds of a random sample of optimal trees, which suggests that body size played a role in shaping the evolution of sauropod morphology. In this context, Bagualia provides insights into the evolution of Sauropoda, particularly regarding changes that occurred during the Early to Middle Jurassic., (© 2025 Willi Hennig Society.)
- Published
- 2025
- Full Text
- View/download PDF
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