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Abstract Background Elevations in the gut metabolite trimethylamine-N-oxide (TMAO) have been linked to cardiovascular and metabolic diseases. Whether elevated TMAO levels reflect early mechanistic involvement or a sequela of evolving disease awaits elucidation. The purpose of this study was to further explore these potential associations. Methods We investigated relationships between circulating levels of TMAO and its pre-cursor substrates, dietary factors, gut microbiome profiles and disease risk in individuals with a Healthy BMI (18.5 30, n = 27) and Metabolic Syndrome (MetS; ≥ 3 ATPIII report criteria, n = 39). Results Unexpectedly, plasma [TMAO] did not vary substantially between groups (means of 3–4 µM; p > 0.05), although carnitine was elevated in participants with MetS. Gut microbial diversity and Firmicutes were also significantly reduced in the MetS group (p

Summary The yeast Saccharomyces cerevisiae uses the pyruvate dehydrogenase‐bypass for acetyl‐CoA biosynthesis. This relatively inefficient pathway limits production potential for acetyl‐CoA‐derived biochemical due to carbon loss and the cost of two high‐energy phosphate bonds per molecule of acetyl‐CoA. Here, we attempted to improve acetyl‐CoA production efficiency by introducing heterologous acetylating aldehyde dehydrogenase and phosphoketolase pathways for acetyl‐CoA synthesis to enhance production of the sesquiterpene trans‐nerolidol. In addition, we introduced auxin‐mediated degradation of the glucose‐dependent repressor Mig1p to allow induced expression of GAL promoters on glucose so that production potential on glucose could be examined. The novel genes that we used to reconstruct the heterologous acetyl‐CoA pathways did not sufficiently complement the loss of endogenous acetyl‐CoA pathways, indicating that superior heterologous enzymes are necessary to establish fully functional synthetic acetyl‐CoA pathways and properly explore their potential for nerolidol synthesis. Notwithstanding this, nerolidol production was improved twofold to a titre of ˜ 900 mg l−1 in flask cultivation using a combination of heterologous acetyl‐CoA pathways and Mig1p degradation. Conditional Mig1p depletion is presented as a valuable strategy to improve the productivities in the strains engineered with GAL promoters‐controlled pathways when growing on glucose.

To date, evaluating the diets of natural enemies like carabids has largely been limited to spatially explicit and short-term sampling. This leaves a knowledge gap for the intra-annual dynamics of carabid diets, and the provision and timing of delivery of natural pest control services. Season-long pitfall trapping of adult carabids was conducted in conventional winter wheat fields, from November 2018 to June 2019, in five French departments. Diagnostic Multiplex PCR of carabid gut contents was used to determine the dynamics of carabid diets. The overall detection rate of target prey DNA was high across carabid individuals (80%) but varied with the prey group. The rate of detection was low for pests, at 8.1% for slugs and 9.6% for aphids. Detection of intraguild predation and predation on decomposers was higher, at 23.8% for spiders, 37.9% for earthworms and 64.6% for springtails. Prey switching was high at the carabid community level, with pest consumption and intraguild predation increasing through the cropping season as the availability of these prey increased in the environment, while the detection of decomposer DNA decreased. Variation in diet through the cropping season was characterized by: (i) complementary predation on slug and aphid pests; and (ii) temporal complementarity in the predominant carabid taxa feeding on each pest. We hypothesize that natural pest control services delivered by carabids are determined by complementary contributions to predation by the different carabid taxa over the season.

Protecting crops against pests is a major issue in the current agricultural production system. In particular, assessing the risk to crops can promote integrated pest management (IPM) strategies that encourage natural control mechanisms and advocate the use of pesticides as a last resort. In this study, we focused on wireworms, major soil-dwelling insect pests inflicting severe economic damage on various crops (including maize, potatoes and cereals) across Europe and North America. We have developed an original hierarchical Bayesian model that explicitly accounts for biological knowledge and uncertainty in field observations, rather than relying solely on statistical correlations, to predict the level of wireworm infestation. The model was calibrated and validated using a substantial dataset originating from an agro-environmental survey carried out over three consecutive years (2012–2014) in France, which provides the wireworm abundance in 419 maize fields, together with information on the landscape context, field history, weather conditions, soil characteristics and farming practices associated to each field. Model outcomes show good agreement with current knowledge from literature and field expertise in terms of the effects of variables on wireworm abundance, and provide fairly good predictive capacity. Subsequently, the model was encapsulated as a software (R shiny application) to predict the risk of wireworm infestation in any field of interest, and can be used by farmers or agricultural advisors as a decision support system for the implementation of IPM strategies. The conceptual framework that we implemented can be adapted to a wide range of similar situations involving other crops and pests.

Sowing of wildflower strips has been integrated in agri-environment schemes of several European countries. Their beneficial effects on natural enemies of pest insects are well documented but (1) the desired spill-over into crop fields has not always been demonstrated, and (2) the need to adapt sown mixtures to regional climatic differences has been rarely addressed.We set up a multi-site experiment in different French climatic regions to compare effects of a wildflower strip with a grass mixture and spontaneous vegetation. The design included five regions, three to five fields per region and the three strip treatments being repeated in each field. We tested strip treatment effects on vegetation (plant species richness, plant and flower cover) and on natural enemies (hoverflies, ladybirds, aphid predation). In a subset, we further analysed the spill-over into winter wheat fields including natural enemies and pest insects (cereal aphids, leaf beetles).The wildflower strip mixture developed well in all regions and increased plant species richness and flower cover compared with grass strips and spontaneous vegetation. We found a corresponding higher hoverfly abundance and aphid predation in wildflower strips that were consistent in all regions, whereas ladybird abundance was not affected. A significantly higher hoverfly abundance, aphid predation and aphid parasitism in wheat fields close to wildflower strips indicated a spill-over. No corresponding margin treatment effects were observed for aphid and leaf beetle abundance in the field. A multivariate analysis comparing the influence of climate and vegetation parameters showed that floral cover better explained variation in natural enemy abundance and predation than climate. Our results demonstrated that similar mixtures of native plants can be used over large climatic gradients to improve biocontrol. Further research is needed to improve spill-over into crop fields and to obtain consistently strong effects in different climate zones.

Adoption of practices that reduce the risk of pest outbreaks is one of the pillars of agroecology and is largely based on biological control. Multiple infield and landscape parameters affect biocontrol, but the effects of conservation soil management on biological control have been poorly investigated over crop season. By comparing winter wheat fields within the same landscape but with different soil management, the direct and indirect effects of soil management (conservation and conventional systems) on natural enemies’ communities and their biological control on aphids was studied from the tillering stage to the harvest. In addition to aphid infestation, two families of the main natural enemies’ guilds were monitored, as well as their associated services: aphid parasitoid, a specialist and flying natural enemy, with parasitism service, and carabid beetles, a generalist and ground-dwelling predator, with aphidophagy service. Soil conservation system hosted more abundant and diverse carabid beetles’ assemblages, and received higher aphidophagy service in June than conventional system. However, neither parasitoid abundance, nor parasitism rates, were affected by soil management. Aphid infestation and its associated damage did not depend on soil management either. Our results suggest that ground-dwelling natural enemies are more impacted by soil management than foliage-dwelling natural enemies, which is partly reflected in aphid biocontrol. In agricultural systems with reduced soil perturbation, direct mortality on ground-dwelling communities due to tillage may be lower than in a conventional system, but habitat heterogeneity is also greater, increasing the number of ecological niches for natural enemies. Both factors are supposed to favor an early presence of natural enemies and a tendency toward a precocious aphidophagy service is indeed observed in conservation system.

There are many different practices that contribute to conservation biological control, but little is known about their complementarity. We tested the effects of providing food and alternative hosts to parasitoids by intercropping a plum orchard with companion plants. Oats and vetch were intercropped into the orchard either as single-species (oats or vetch) or two-species (oats and vetch combined) intercrops within an inter-row. The trophic resources provided by these intercrops were assessed, along with the incidences of aphids and their parasitoids in plum trees. We found up to ten alternative host species provided by oats and vetch, and extrafloral nectar was available from the vetch and mixed strips. An effect of intercrop type and distance to plum trees was observed on aphid incidence during one sampling period. Parasitism rates in exclusion cages were affected by intercrop type, reaching almost 60% close to the mixed intercrop. However, no general tendency was observed upon whether oats, vetch or their mixture was associated with a lower incidence of aphids. We found no evidence that providing effective sources of food and alternative hosts for parasitoids increased aphid mortality in this study. The context-dependent efficiency of intercropping is discussed.