7 results on '"Pucciniomycotina"'
Search Results
2. Variations in the root mycobiome and mycorrhizal fungi between different types of Vanilla forest farms on Réunion Island.
- Author
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Hellequin, Eve, Rech, Philippe, Petrolli, Rémi, Selosse, Marc-André, Kodja, Hippolyte, Piquet, Bérénice, and Martos, Florent
- Abstract
The mycorrhizal fungi of cultivated Vanilla spp. have mainly been studied in America, while a recent study has investigated them on Réunion Island (Indian Ocean). However, there are many different types of cultivation on Réunion, from shade-house crops to forest farms of endemic or exotic trees. Here we fill a gap in the study of the root mycobiome of Vanilla by sampling vines in forest plantations on recent lava flows in the southeast of Réunion. Specifically, we aimed to characterize the fungal communities between terrestrial and epiphytic roots, between forest farms that differ mainly in the species of trees, and between Vanilla roots and ECM-like roots of nearby trees. By sequencing fungal ITS2, we showed that the Vanilla root mycobiome is diverse and differed between the root types and forest farms. Epiphytic and terrestrial roots host endophytic fungi, while a putative rust with visible urediniospores was abundant in terrestrial roots mainly. Other pathogens were detected in epiphytic roots (Colletotrichum) with no sign of disease. Following sequencing and electron microscopy, Tulasnellaceae, characterized by imperforate parenthesomes and cell wall expansion with an amorphous matrix, were shown to be the main mycorrhizal fungi in both vanilla root types. Interestingly, the dominant Tulasnellaceae OTU was found in ECM-type roots of trees belonging to the ectomycorrhizal family Sapotaceae. Further observations are needed to confirm the ectomycorrhizal association of endemic trees with Tulasnella. Moreover, labeling experiments will be instrumental in investigating the transfer of nutrients between the trees and the Vanilla through the network of mycorrhizal associations in the soil. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. Diversity of colacosome-interacting mycoparasites expands the understanding of the evolution and ecology of Microbotryomycetes.
- Author
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Schoutteten, N., Yurkov, A., Leroux, O., Haelewaters, D., Van Der Straeten, D., Miettinen, O., Boekhout, T., Begerow, D., and Verbeken, A.
- Subjects
TRANSMISSION electron microscopy ,YEAST culture ,BASIDIOMYCOTA ,NUCLEOTIDE sequence ,DNA sequencing - Abstract
Mycoparasites in Basidiomycota comprise a diverse group of fungi, both morphologically and phylogenetically. They interact with their hosts through either fusion-interaction or colacosome-interaction. Colacosomes are subcellular structures formed by the mycoparasite at the host-parasite interface, which penetrate the parasite and host cell walls. Previously, these structures were detected in 19 fungal species, usually by means of transmission electron microscopy. Most colacosome-forming species have been assigned to Microbotryomycetes (Pucciniomycotina, Basidiomycota), a highly diverse class, comprising saprobic yeasts, mycoparasites, and phytoparasites. In general, these myco- and phytoparasites are dimorphic organisms, with a parasitic filamentous morph and saprobic yeast morph. We investigated colacosome-forming mycoparasites based on fungarium material, freshly collected specimens, and cultures of yeast morphs. We characterised the micromorphology of filamentous morphs, the physiological characteristics of yeast morphs, and inferred phylogenetic relationships based on DNA sequence data from seven loci. We outline and employ an epifluorescence-based microscopic method to assess the presence and organisation of colacosomes. We describe five new species in the genus Colacogloea, the novel dimorphic mycoparasite Mycogloiocolax gerardii, and provide the first report of a sexual, mycoparasitic morph in Colacogloea philyla and in the genus Slooffia. We detected colacosomes in eight fungal species, which brings the total number of known colacosome-forming fungi to 27. Finally, we revealed three distinct types of colacosome organisation in Microbotryomycetes. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
4. Insights into Diversity, Distribution, and Systematics of Rust Genus Puccinia.
- Author
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Avasthi, Shubhi, Gautam, Ajay Kumar, Niranjan, Mekala, Verma, Rajnish Kumar, Karunarathna, Samantha C., Kumar, Ashwani, and Suwannarach, Nakarin
- Subjects
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PUCCINIA , *RUST fungi , *STRIPE rust , *NUMBERS of species , *LEAF rust , *NUCLEOTIDE sequence , *AGRICULTURE - Abstract
Puccinia, which comprises 4000 species, is the largest genus of rust fungi and one of the destructive plant pathogenic rust genera that are reported to infect both agricultural and nonagricultural plants with severe illnesses. The presence of bi-celled teliospores is one of the major features of these rust fungi that differentiated them from Uromyces, which is another largest genus of rust fungi. In the present study, an overview of the current knowledge on the general taxonomy and ecology of the rust genus Puccinia is presented. The status of the molecular identification of this genus along with updated species numbers and their current statuses in the 21st century are also presented, in addition to their threats to both agricultural and nonagricultural plants. Furthermore, a phylogenetic analysis based on ITS and LSU DNA sequence data available in GenBank and the published literature was performed to examine the intergeneric relationships of Puccinia. The obtained results revealed the worldwide distribution of Puccinia. Compared with other nations, a reasonable increase in research publications over the current century was demonstrated in Asian countries. The plant families Asteraceae and Poaceae were observed as the most infected in the 21st century. The phylogenetic studies of the LSU and ITS sequence data revealed the polyphyletic nature of Puccinia. In addition, the presences of too short, too lengthy, and incomplete sequences in the NCBI database demonstrate the need for extensive DNA-based analyses for a better understanding of the taxonomic placement of Puccinia. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
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5. Leucosporidium egoroviorum f.a., sp. nov., a New Yeast Species Isolated from Zucchini.
- Author
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Kachalkin, A. V., Glushakova, A. M., and Tomashevskaya, M. A.
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ZUCCHINI , *CUCURBITA pepo , *SPECIES , *YEAST - Abstract
Leucosporidium egoroviorum f.a., sp. nov., a new anamorphic species of the basidiomycetous yeasts, was isolated as an endophyte from the fruits of Cucurbita pepo subsp. pepo (zucchini). According to its genetic, physiological, and morphological characteristics, the new species differed significantly from the closely related species L. fellii, L. intermedium, and L. krtinense. The holotype of the new species, KBP Y-6804T, is preserved in a metabolically inactive state; its isotype strains are VKM Y-3065, DSM 113574, and CBS 17590. The MycoBank number is MB 842805. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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6. Phylogeny of Rhodotorula pinalis and Its Reclassification as Fellozyma pinalis comb. nov.
- Author
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Kachalkin, A. V.
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RHODOTORULA , *PHYLOGENY , *PEAT mosses , *RECOMBINANT DNA - Abstract
The type strain Rhodotorula pinalis VKM Y-2963 has been characterized genetically and phylogenetically. The rDNA sequences obtained for the ITS region and D1/D2 domains of LSU have been deposited to NCBI GenBank (OM666053). Strains from the Moscow region, Fellozyma sp. KBP 3851 from Sphagnum mosses and Rh. pinalis VKM Y-2963 from dead conifer needles, were found to be conspecific. The results of phylogenetic analysis suggested that the species Rh. pinalis should be reassigned to the genus Fellozyma. The new combination, Fellozyma pinalis comb. nov., is proposed, MycoBank MB842988. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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7. A Global Overview of Diversity and Phylogeny of the Rust Genus Uromyces.
- Author
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Gautam, Ajay Kumar, Avasthi, Shubhi, Verma, Rajnish Kumar, Sushma, Niranjan, Mekala, Devadatha, Bandarupalli, Jayawardena, Ruvishika S., Suwannarach, Nakarin, and Karunarathna, Samantha C.
- Subjects
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PHYLOGENY , *NUCLEOTIDE sequence , *DNA sequencing , *LIFE cycles (Biology) , *PUCCINIA - Abstract
Uromyces is the second-largest plant pathogenic rust genus, is responsible for numerous diseases, and has major effects on both agricultural and non-agricultural plants. The genus is generally characterized by its unicellular teliospores that help to characterize it and distinguish it from another important rust genus, Puccinia. In this study, a global overview of the diversity and distribution of Uromyces is presented based on both online and offline resources. The information obtained was analyzed for numerical and graphical summaries to provide the diversity and distribution of the genus by country and continent. Besides this, broad taxonomical aspects, a brief life cycle, and other comparative aspects on diversity and distribution were also provided. In addition, a phylogenetic analysis based on the ITS and nLSU DNA sequence data available in GenBank and published literature was performed to examine the intergeneric relationships of Uromyces. The results obtained revealed that the rust genus is found distributed over 150 countries, territories, and occupancies of the world on around 647 plant genera belonging to 95 plant families. Phylogenetic studies based on LSU and ITS sequence data revealed that Uromyces species are polyphyletic and require more DNA-based analyses for a better understanding of their taxonomic placement. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
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