28 results on '"S. Fritsch"'
Search Results
2. Intrinsic Fault Resistance for Nonlinear Filters with State-Dependent Probability of Detection
- Author
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Gunner S. Fritsch and Kyle J. DeMars
- Subjects
Space and Planetary Science ,Aerospace Engineering - Published
- 2022
3. Engineering a fermenting yeast able to produce the fragrant β-ionone apocarotenoid for enhanced aroma properties in wine
- Author
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John Timmins, Niel van Wyk, Heinrich Kroukamp, Roy Walker, S Fritsch, Doris Rauhut, Christian Wallbrunn, Isak Pretorius, and Ian Paulsen
- Subjects
General Medicine ,Applied Microbiology and Biotechnology ,Microbiology - Abstract
Wine is composed of multitudinous flavour components and volatile organic compounds that provide this beverage with its attractive properties of taste and aroma. The perceived quality of a wine can be attributed to the absolute and relative concentrations of favourable aroma compounds; hence, increasing the detectable levels of an attractive aroma, such as β-ionone with its violet and berry notes, can improve the organoleptic qualities of given wine styles. We here describe the generation of a new grape-must fermenting strain of Saccharomyces cerevisiae that is capable of releasing β-ionone through the heterologous expression of both the enzyme carotenoid cleavage dioxygenase 1 (CCD1) and its substrate, β-carotene. Haploid laboratory strains of S. cerevisiae were constructed with and without integrated carotenogenic genes and transformed with a plasmid containing the genes of CCD1. These strains were then mated with a sporulated diploid wine industry yeast, VIN13, and four resultant crosses—designated MQ01–MQ04–which were capable of fermenting the must to dryness were compared for their ability to release β-ionone. Analyses of their fermentation products showed that the MQ01 strain produced a high level of β-ionone and offers a fermenting hybrid yeast with the potential to enhance the organoleptic qualities of wine.
- Published
- 2023
4. Lessons learned on using High-Performance Computing and Data Science Methods towards understanding the Acute Respiratory Distress Syndrome (ARDS)
- Author
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C. Barakat, S. Fritsch, K. Sharafutdinov, G. Ingolfsson, A. Schuppert, S. Brynjolfsson, and M. Riedel
- Abstract
Acute Respiratory Distress Syndrome (ARDS), also known as noncardiogenic pulmonary edema, is a severe condition that affects around one in ten-thousand people every year with life-threatening consequences. Its pathophysiology is characterized by bronchoalveolar injury and alveolar collapse (i.e., atelectasis), whereby its patient diagnosis is based on the so-called ‘Berlin Definition‘. One common practice in Intensive Care Units (ICUs) is to use lung recruitment manoeuvres (RMs) in ARDS to open up unstable, collapsed alveoli using a temporary increase in transpulmonary pressure. Many RMs have been proposed, but there is also confusion regarding the optimal way to achieve and maintain alveolar recruitment in ARDS. Therefore, the best solution to prevent lung damages by ARDS is to identify the onset of ARDS which is still a matter of research. Determining ARDS disease onset, progression, diagnosis, and treatment required algorithmic support which in turn raises the demand for cutting-edge computing power. This paper thus describes several different data science approaches to better understand ARDS, such as using time series analysis and image recognition with deep learning methods and mechanistic modelling using a lung simulator. In addition, we outline how High-Performance Computing (HPC) helps in both cases. That also includes porting the mechanistic models from serial MatLab approaches and its modular supercomputer designs. Finally, without losing sight of discussing the datasets, their features, and their relevance, we also include broader selected lessons learned in the context of ARDS out of our Smart Medical Information Technology for Healthcare (SMITH) research project. The SMITH consortium brings together technologists and medical doctors of nine hospitals, whereby the ARDS research is performed by our Algorithmic Surveillance of ICU (ASIC) patients team. The paper thus also describes how it is essential that HPC experts team up with medical doctors that usually lack the technical and data science experience and contribute to the fact that a wealth of data exists, but ARDS analysis is still slowly progressing. We complement the ARDS findings with selected insights from our Covid-19 research under the umbrella of the European Open Science Cloud (EOSC) fast track grant, a very similar application field.
- Published
- 2022
5. Biosynthesis of a clickable pyoverdine via in vivo enzyme engineering of an adenylation domain.
- Author
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Puja H, Bianchetti L, Revol-Tissot J, Simon N, Shatalova A, Nommé J, Fritsch S, Stote RH, Mislin GLA, Potier N, Dejaegere A, and Rigouin C
- Subjects
- Siderophores biosynthesis, Siderophores metabolism, Bacterial Proteins metabolism, Bacterial Proteins genetics, Bacterial Proteins chemistry, Catalytic Domain, Substrate Specificity, Oligopeptides biosynthesis, Oligopeptides metabolism, Pseudomonas aeruginosa enzymology, Pseudomonas aeruginosa genetics, Pseudomonas aeruginosa metabolism, Peptide Synthases metabolism, Peptide Synthases genetics, Click Chemistry, Protein Engineering methods
- Abstract
The engineering of non ribosomal peptide synthetases (NRPS) for new substrate specificity is a potent strategy to incorporate non-canonical amino acids into peptide sequences, thereby creating peptide diversity and broadening applications. The non-ribosomal peptide pyoverdine is the primary siderophore produced by Pseudomonas aeruginosa and holds biomedical promise in diagnosis, bio-imaging and antibiotic vectorization. We engineered the adenylation domain of PvdD, the terminal NRPS in pyoverdine biosynthesis, to accept a functionalized amino acid. Guided by molecular modeling, we rationally designed mutants of P. aeruginosa with mutations at two positions in the active site. A single amino acid change results in the successful incorporation of an azido-L-homoalanine leading to the synthesis of a new pyoverdine analog, functionalized with an azide function. We further demonstrated that copper free click chemistry is efficient on the functionalized pyoverdine and that the conjugated siderophore retains the iron chelation properties and its capacity to be recognized and transported by P. aeruginosa. The production of clickable pyoverdine holds substantial biotechnological significance, paving the way for numerous downstream applications., (© 2024. The Author(s).)
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- 2024
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6. Spectroscopic Evidence for Doubly Hydrogen-Bonded Cationic Dimers in the Solid, Liquid, and Gaseous Phases of Carboxyl-Functionalized Ionic Liquids.
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Hunger L, Al Sheakh L, Fritsch S, Villinger A, Ludwig R, Harville P, Moss O, Lachowicz A, and Johnson MA
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Intermolecular interactions determine whether matter sticks together, gases condense into liquids, or liquids freeze into solids. The most prominent example is hydrogen bonding in water, responsible for the anomalous properties in the liquid phase and polymorphism in ice. The physical properties are also exceptional for ionic liquids (ILs), wherein a delicate balance of Coulomb interactions, hydrogen bonds, and dispersion interactions results in a broad liquid range and the vaporization of ILs as ion pairs. In this study, we show that strong, local, and directional hydrogen bonds govern the structures and arrangements in the solid, liquid, and gaseous phases of carboxyl-functionalized ILs. For that purpose, we explored the H-bonded motifs by X-ray diffraction and attenuated total reflection (ATR) infrared (IR) spectroscopy in the solid state, by ATR and transmission IR spectroscopy in the liquid phase, and by cryogenic ion vibrational predissociation spectroscopy (CIVPS) in the gaseous phase at low temperature. The analysis of the CO stretching bands reveals doubly hydrogen-bonded cationic dimers (c═c), resembling the archetype H-bond motif known for carboxylic acids. The like-charge doubly hydrogen-bonded ion pairs are present in the crystal structure of the IL, survive phase transition into the liquid state, and are still present in the gaseous phase even in (2,1) complexes wherein one counterion is removed and repulsive Coulomb interaction increased. The interpretation of the vibrational spectra is supported by quantum chemical methods. These observations have implications for the fundamental nature of the hydrogen bond between ions of like charge.
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- 2024
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7. Synthesis and physical properties of tunable aryl alkyl ionic liquids based on 1-aryl-4,5-dimethylimidazolium cations.
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Fritsch S and Strassner T
- Abstract
We present a new class of tunable aryl alkyl ionic liquids (TAAILs) based on 1-aryl-4,5-dimethylimidazolium cations with electron-withdrawing and -donating substituents in different positions of the phenyl ring and the bis(trifluoromethylsulfonyl)imide (NTf
2 ) anion. We investigated the effect of additional methyl groups in the backbone of the imidazolium core on the physical properties regarding viscosity, conductivity and electrochemical window. With an electrochemical window of up to 6.3 V, which is unprecedented for TAAILs with an NTf2 anion, this new class of TAAILs demonstrates the opportunities that arise from modifications in the backbone of the imidazolium cation., (Copyright © 2024, Fritsch and Strassner.)- Published
- 2024
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8. Effects of structured protocolized physical therapy on the duration of mechanical ventilation in patients with prolonged weaning.
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Bickenbach J, Fritsch S, Cosler S, Simon Y, Dreher M, Theisen S, Kao J, Hildebrand F, Marx G, and Simon TP
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- Humans, Hand Strength, Critical Illness therapy, Time Factors, Intensive Care Units, Physical Therapy Modalities, Respiration, Artificial adverse effects, Ventilator Weaning methods
- Abstract
Purpose: 20% of patients with mechanical ventilation (MV) have a prolonged, complex weaning process, often experiencing a condition of ICU-acquired weakness (ICUAW), with a severe decrease in muscle function and restricted long-term prognosis. We aimed to analyze a protocolized, systematic approach of physiotherapy in prolonged weaning patients and hypothesized that the duration of weaning from MV would be shortened., Methods: ICU patients with prolonged weaning were included before (group 1) and after (group 2) introduction of a quality control measure of a structured and protocolized physiotherapy program. Primary endpoint was the tested dynamometric handgrip strength and the Surgical Intensive Care Unit Optimal Mobilization Score (SOMS). Secondary endpoints were weaning success rate, ventilator-free days, hospital mortality, the prevalence of ICUAW, infections and delirium., Results: 106 patients were included. Both the SOMS and the handgrip test were significantly improved after introducing the program. Despite no differences in weaning success rates at discharge, the total length of MV was significantly shorter in group 2, which also had lower prevalence of infection and higher probability of survival., Conclusions: Protocolized, systematic physiotherapy resulted in an improvement of the clinical outcome in patients with prolonged weaning. Results were objectifiable with the SOMS and the handgrip test., Competing Interests: Declaration of Competing Interest The Authors declare that there is no conflict of interest., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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9. Siderophore specificities of the Pseudomonas aeruginosa TonB-dependent transporters ChtA and ActA.
- Author
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Will V, Gasser V, Kuhn L, Fritsch S, Heinrichs DE, and Schalk IJ
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- Bacterial Proteins metabolism, Membrane Transport Proteins metabolism, Iron metabolism, Siderophores, Pseudomonas aeruginosa metabolism
- Abstract
Iron is an essential nutrient for the survival and virulence of Pseudomonas aeruginosa. The pathogen expresses at least 15 different iron-uptake pathways, the majority involving small iron chelators called siderophores. P. aeruginosa produces two siderophores, but can also use many produced by other microorganisms. This implies that the bacterium expresses appropriate TonB-dependent transporters (TBDTs) at the outer membrane to import the ferric form of each of the siderophores used. Here, we show that the two α-carboxylate-type siderophores rhizoferrin-Fe and staphyloferrin A-Fe are transported into P. aeruginosa cells by the TBDT ActA. Among the mixed α-carboxylate/hydroxamate-type siderophores, we found aerobactin-Fe to be transported by ChtA and schizokinen-Fe and arthrobactin-Fe by ChtA and another unidentified TBDT. Our findings enhance the understanding of the adaptability of P. aeruginosa and hold significant implications for developing novel strategies to combat antibiotic resistance., (© 2023 Federation of European Biochemical Societies.)
- Published
- 2023
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10. Vectorization via Siderophores Increases Antibacterial Activity of K(RW) 3 Peptides against Pseudomonas aeruginosa.
- Author
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Olshvang E, Fritsch S, Scholtyssek OC, Schalk IJ, and Metzler-Nolte N
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- Iron metabolism, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents chemistry, Membrane Transport Proteins, Peptides, Carrier Proteins, Siderophores chemistry, Pseudomonas aeruginosa
- Abstract
A series of new conjugates comprised from a small synthetic antimicrobial peptide (AMP) and a siderophore-type vector component was designed and tested for activity on P. aeruginosa PAO1 and several genetically modified strains. As AMP, the well-established arginine-tryptophane combination K(RW)
3 (P1) was chosen with an added lysine for siderophore attachment. This peptide is easy to prepare, modify, and possesses good anti-bacterial activity. On the vector part, we examined several moieties: (i) the natural siderophore deferoxamine (DFO); (ii) bidentate iron chelators based on the hydroxamate building block (4 a-c) ; (iii) the non-siderophore chelators deferasirox (DFX) and deferiprone-carboxylate (DFP-COOH). All conjugates were prepared by solid phase synthesis techniques and fully characterized by HPLC and mass spectrometry (including HR-MS).55 Fe uptake assays indicate a receptor-mediated uptake for 4 a-c, DFP-COOH and DFO, which is dependent on the outer membrane transporter FoxA in the case of DFO. All conjugates showed increased antibacterial activity against P. aeruginosa compared to the parent peptide P1 alone when investigated in iron-depleted medium. MIC values were as low as 2 μM (for P1-DFP) on wild type P. aeruginosa. The activity of P1-DFO and P1-DFP was even better on genetically mutated strains unable to produce siderophores (down to 0.5 μM). Although the DFX vector on its own was not able to transport iron inside the bacterial cell as shown by55 Fe uptake studies, the P1-DFX conjugate had excellent antibacterial activity compared to P1 (2 μM, and as low as 0.25 μM on a receptor-deficient strain unable to produce siderophores), suggesting that the conjugates were indeed recognized and internalized by an (unknown) transporter. Control experiments with an equimolar mixture of P1 and DFX confirm that the observed activity is intrinsic to vectorization. This work thus demonstrates the power of linking small AMPs covalently to siderophores for a new class of Trojan Horse antibiotics, with P1-DFP and P1-DFX being the most potent conjugates., (© 2023 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)- Published
- 2023
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11. Key Role of Choline Head Groups in Large Unilamellar Phospholipid Vesicles for the Interaction with and Rupture by Silica Nanoparticles.
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Leibe R, Fritsch-Decker S, Gussmann F, Wagbo AM, Wadhwani P, Diabaté S, Wenzel W, Ulrich AS, and Weiss C
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- Humans, Unilamellar Liposomes, Silicon Dioxide chemistry, Choline, Phosphatidylcholines chemistry, Lecithins, Phospholipids chemistry, Nanoparticles chemistry
- Abstract
For highly abundant silica nanomaterials, detrimental effects on proteins and phospholipids are postulated as critical molecular initiating events that involve hydrogen-bonding, hydrophobic, and/or hydrophilic interactions. Here, large unilamellar vesicles with various well-defined phospholipid compositions are used as biomimetic models to recapitulate membranolysis, a process known to be induced by silica nanoparticles in human cells. Differential analysis of the dominant phospholipids determined in membranes of alveolar lung epithelial cells demonstrates that the quaternary ammonium head groups of phosphatidylcholine and sphingomyelin play a critical and dose-dependent role in vesicle binding and rupture by amorphous colloidal silica nanoparticles. Surface modification by either protein adsorption or by covalent coupling of carboxyl groups suppresses the disintegration of these lipid vesicles, as well as membranolysis in human A549 lung epithelial cells by the silica nanoparticles. Furthermore, molecular modeling suggests a preferential affinity of silanol groups for choline head groups, which is also modulated by the pH value. Biomimetic lipid vesicles can thus be used to better understand specific phospholipid-nanoparticle interactions at the molecular level to support the rational design of safe advanced materials., (© 2023 The Authors. Small published by Wiley-VCH GmbH.)
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- 2023
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12. Developing an Artificial Intelligence-Based Representation of a Virtual Patient Model for Real-Time Diagnosis of Acute Respiratory Distress Syndrome.
- Author
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Barakat CS, Sharafutdinov K, Busch J, Saffaran S, Bates DG, Hardman JG, Schuppert A, Brynjólfsson S, Fritsch S, and Riedel M
- Abstract
Acute Respiratory Distress Syndrome (ARDS) is a condition that endangers the lives of many Intensive Care Unit patients through gradual reduction of lung function. Due to its heterogeneity, this condition has been difficult to diagnose and treat, although it has been the subject of continuous research, leading to the development of several tools for modeling disease progression on the one hand, and guidelines for diagnosis on the other, mainly the "Berlin Definition". This paper describes the development of a deep learning-based surrogate model of one such tool for modeling ARDS onset in a virtual patient: the Nottingham Physiology Simulator. The model-development process takes advantage of current machine learning and data-analysis techniques, as well as efficient hyperparameter-tuning methods, within a high-performance computing-enabled data science platform. The lightweight models developed through this process present comparable accuracy to the original simulator (per-parameter R
2 > 0.90). The experimental process described herein serves as a proof of concept for the rapid development and dissemination of specialised diagnosis support systems based on pre-existing generalised mechanistic models, making use of supercomputing infrastructure for the development and testing processes and supported by open-source software for streamlined implementation in clinical routines.- Published
- 2023
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13. Friedel-Crafts acylation of benzene derivatives in tunable aryl alkyl ionic liquids (TAAILs).
- Author
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Lerch S, Fritsch S, and Strassner T
- Abstract
An iron(III) chloride hexahydrate-catalyzed Friedel-Crafts acylation of benzene derivatives in tunable aryl alkyl ionic liquids (TAAILs) has been developed. Through optimization of the metal salt, reaction conditions and ionic liquids, we were able to design a robust catalyst system that tolerates different electron-rich substrates under ambient atmosphere and allows for a multigram scale., (Copyright © 2023, Lerch et al.)
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- 2023
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14. Analysis of Chest X-ray for COVID-19 Diagnosis as a Use Case for an HPC-Enabled Data Analysis and Machine Learning Platform for Medical Diagnosis Support.
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Barakat C, Aach M, Schuppert A, Brynjólfsson S, Fritsch S, and Riedel M
- Abstract
The COVID-19 pandemic shed light on the need for quick diagnosis tools in healthcare, leading to the development of several algorithmic models for disease detection. Though these models are relatively easy to build, their training requires a lot of data, storage, and resources, which may not be available for use by medical institutions or could be beyond the skillset of the people who most need these tools. This paper describes a data analysis and machine learning platform that takes advantage of high-performance computing infrastructure for medical diagnosis support applications. This platform is validated by re-training a previously published deep learning model (COVID-Net) on new data, where it is shown that the performance of the model is improved through large-scale hyperparameter optimisation that uncovered optimal training parameter combinations. The per-class accuracy of the model, especially for COVID-19 and pneumonia, is higher when using the tuned hyperparameters (healthy: 96.5%; pneumonia: 61.5%; COVID-19: 78.9%) as opposed to parameters chosen through traditional methods (healthy: 93.6%; pneumonia: 46.1%; COVID-19: 76.3%). Furthermore, training speed-up analysis shows a major decrease in training time as resources increase, from 207 min using 1 node to 54 min when distributed over 32 nodes, but highlights the presence of a cut-off point where the communication overhead begins to affect performance. The developed platform is intended to provide the medical field with a technical environment for developing novel portable artificial-intelligence-based tools for diagnosis support.
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- 2023
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15. Comparing the Toxicological Responses of Pulmonary Air-Liquid Interface Models upon Exposure to Differentially Treated Carbon Fibers.
- Author
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Friesen A, Fritsch-Decker S, Mülhopt S, Quarz C, Mahl J, Baumann W, Hauser M, Wexler M, Schlager C, Gutmann B, Krebs T, Goßmann AK, Weis F, Hufnagel M, Stapf D, Hartwig A, and Weiss C
- Subjects
- Humans, Carbon Fiber, Lung metabolism, Cell Culture Techniques, Nanotubes, Carbon toxicity, Asbestos toxicity
- Abstract
In recent years, the use of carbon fibers (CFs) in various sectors of industry has been increasing. Despite the similarity of CF degradation products to other toxicologically relevant materials such as asbestos fibers and carbon nanotubes, a detailed toxicological evaluation of this class of material has yet to be performed. In this work, we exposed advanced air-liquid interface cell culture models of the human lung to CF. To simulate different stresses applied to CF throughout their life cycle, they were either mechanically (mCF) or thermo-mechanically pre-treated (tmCF). Different aspects of inhalation toxicity as well as their possible time-dependency were monitored. mCFs were found to induce a moderate inflammatory response, whereas tmCF elicited stronger inflammatory as well as apoptotic effects. Furthermore, thermal treatment changed the surface properties of the CF resulting in a presumed adhesion of the cells to the fiber fragments and subsequent cell loss. Triple-cultures encompassing epithelial, macrophage, and fibroblast cells stood out with an exceptionally high inflammatory response. Only a weak genotoxic effect was detected in the form of DNA strand breaks in mono- and co-cultures, with triple-cultures presenting a possible secondary genotoxicity. This work establishes CF fragments as a potentially harmful material and emphasizes the necessity of further toxicological assessment of existing and upcoming advanced CF-containing materials.
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- 2023
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16. Trojan Horse Siderophore Conjugates Induce Pseudomonas aeruginosa Suicide and Qualify the TonB Protein as a Novel Antibiotic Target.
- Author
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Peukert C, Gasser V, Orth T, Fritsch S, Normant V, Cunrath O, Schalk IJ, and Brönstrup M
- Subjects
- Pseudomonas aeruginosa metabolism, Membrane Proteins metabolism, Biological Transport, Membrane Transport Proteins metabolism, Siderophores chemistry, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents metabolism
- Abstract
Rising infection rates with multidrug-resistant pathogens calls for antibiotics with novel modes of action. Herein, we identify the inner membrane protein TonB, a motor of active uptake in Gram-negative bacteria, as a novel target in antimicrobial therapy. The interaction of the TonB box of outer membrane transporters with TonB is crucial for the internalization of essential metabolites. We designed TonB box peptides and coupled them with synthetic siderophores in order to facilitate their uptake into bacteria in up to 32 synthetic steps. Three conjugates repressed the growth of Pseudomonas aeruginosa cells unable to produce their own siderophores, with minimal inhibitory concentrations between 0.1 and 0.5 μM. The transporters mediating uptake of these compounds were identified as PfeA and PirA. The study illustrates a variant of cellular suicide where a transporter imports its own inhibitor and demonstrates that artificial siderophores can import cargo with molecular weights up to 4 kDa.
- Published
- 2023
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17. Engineering a fermenting yeast able to produce the fragrant β-ionone apocarotenoid for enhanced aroma properties in wine.
- Author
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Timmins J, van Wyk N, Kroukamp H, Walker R, Fritsch S, Rauhut D, Wallbrunn C, Pretorius I, and Paulsen I
- Subjects
- Odorants, Norisoprenoids metabolism, Fermentation, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae metabolism, Wine
- Abstract
Wine is composed of multitudinous flavour components and volatile organic compounds that provide this beverage with its attractive properties of taste and aroma. The perceived quality of a wine can be attributed to the absolute and relative concentrations of favourable aroma compounds; hence, increasing the detectable levels of an attractive aroma, such as β-ionone with its violet and berry notes, can improve the organoleptic qualities of given wine styles. We here describe the generation of a new grape-must fermenting strain of Saccharomyces cerevisiae that is capable of releasing β-ionone through the heterologous expression of both the enzyme carotenoid cleavage dioxygenase 1 (CCD1) and its substrate, β-carotene. Haploid laboratory strains of S. cerevisiae were constructed with and without integrated carotenogenic genes and transformed with a plasmid containing the genes of CCD1. These strains were then mated with a sporulated diploid wine industry yeast, VIN13, and four resultant crosses-designated MQ01-MQ04-which were capable of fermenting the must to dryness were compared for their ability to release β-ionone. Analyses of their fermentation products showed that the MQ01 strain produced a high level of β-ionone and offers a fermenting hybrid yeast with the potential to enhance the organoleptic qualities of wine., (© The Author(s) 2023. Published by Oxford University Press on behalf of FEMS.)
- Published
- 2023
- Full Text
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18. [Weaning from invasive ventilation : Challenges in the clinical routine].
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Bickenbach J and Fritsch S
- Subjects
- Humans, Noninvasive Ventilation
- Abstract
Modern intensive care medicine is caught between the conflicting demands of an efficient but also increasingly more technical intensive care treatment with numerous therapeutic options and, at the same time, an ageing society with increasing morbidity. This is reflected, among other things, in an increasing number of ventilated patients in intensive care units and an increasing proportion of patients for whom ventilation cannot easily be discontinued. Weaning from a ventilator, which can account for more than 50% of the total ventilation time, therefore plays a central role in this process. This main topic article presents the need for strategically wise and holistic actions to minimize the consequences of invasive mechanical ventilation for patients. An attempt is made to shed more light on individual aspects of the ventilation weaning process with high relevance for clinical practice. Especially for prolonged weaning from ventilation, many more concepts are needed than simply ending ventilation., (© 2022. The Author(s), under exclusive licence to Springer Medizin Verlag GmbH, ein Teil von Springer Nature.)
- Published
- 2022
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19. Gene Expression Profiling of Mono- and Co-Culture Models of the Respiratory Tract Exposed to Crystalline Quartz under Submerged and Air-Liquid Interface Conditions.
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Friesen A, Fritsch-Decker S, Hufnagel M, Mülhopt S, Stapf D, Weiss C, and Hartwig A
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- Cell Culture Techniques, Coculture Techniques, Epithelial Cells metabolism, Gene Expression Profiling, Lung metabolism, Quartz toxicity
- Abstract
In vitro lung cell models like air-liquid interface (ALI) and 3D cell cultures have advanced greatly in recent years, being especially valuable for testing advanced materials (e.g., nanomaterials, fibrous substances) when considering inhalative exposure. Within this study, we established submerged and ALI cell culture models utilizing A549 cells as mono-cultures and co-cultures with differentiated THP-1 (dTHP-1), as well as mono-cultures of dTHP-1. After ALI and submerged exposures towards α-quartz particles (Min-U-Sil5), with depositions ranging from 15 to 60 µg/cm
2 , comparison was made with respect to their transcriptional cellular responses employing high-throughput RT-qPCR. A significant dose- and time-dependent induction of genes coding for inflammatory proteins, e.g., IL-1A , IL-1B , IL-6 , IL-8 , and CCL22 , as well as genes associated with oxidative stress response such as SOD2 , was observed, even more pronounced in co-cultures. Changes in the expression of similar genes were more pronounced under submerged conditions when compared to ALI exposure in the case of A549 mono-cultures. Hereby, the activation of the NF-κB signaling pathway and the NLRP3 inflammasome seem to play an important role. Regarding genotoxicity, neither DNA strand breaks in ALI cultivated cells nor a transcriptional response to DNA damage were observed. Altogether, the toxicological responses depended considerably on the cell culture model and exposure scenario, relevant to be considered to improve toxicological risk assessment.- Published
- 2022
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20. Total Synthesis of Resveratrone and iso-Resveratrone.
- Author
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Fritsch S, Aldemir N, Balszuweit J, Bojaryn K, Voskuhl J, and Hirschhäuser C
- Subjects
- Photons, Epoxy Compounds, Esters
- Abstract
The first total synthesis of resveratrone and iso-resveratrone based on an epoxide olefination approach is described. The pivotal reaction proceeds by insertion of the lithiated epoxide into a boronic ester and subsequent syn-elimination. Resveratrone has been described to have remarkable photophysical properties, including two-photon absorption. Therefore, an azide derivative has been prepared to allow for use as a biological label., (© 2022 The Authors. Published by Wiley-VCH GmbH.)
- Published
- 2022
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21. Uptake Mechanisms and Regulatory Responses to MECAM- and DOTAM-Based Artificial Siderophores and Their Antibiotic Conjugates in Pseudomonas aeruginosa .
- Author
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Fritsch S, Gasser V, Peukert C, Pinkert L, Kuhn L, Perraud Q, Normant V, Brönstrup M, and Schalk IJ
- Subjects
- Anti-Bacterial Agents metabolism, Anti-Bacterial Agents pharmacology, Benzamides, Catechols metabolism, Catechols pharmacology, Gram-Negative Bacteria metabolism, Hydroxybenzoates, Iron metabolism, Membrane Transport Proteins genetics, Membrane Transport Proteins metabolism, Zinc metabolism, Pseudomonas aeruginosa metabolism, Siderophores metabolism, Siderophores pharmacology
- Abstract
The development of new antibiotics against Gram-negative bacteria has to deal with the low permeability of the outer membrane. This obstacle can be overcome by utilizing siderophore-dependent iron uptake pathways as entrance routes for antibiotic uptake. Iron-chelating siderophores are actively imported by bacteria, and their conjugation to antibiotics allows smuggling the latter into bacterial cells. Synthetic siderophore mimetics based on MECAM (1,3,5- N , N ', N ″-tris-(2,3-dihydroxybenzoyl)-triaminomethylbenzene) and DOTAM (1,4,7,10-tetrakis(carbamoylmethyl)-1,4,7,10-tetraazacyclododecane) cores, both chelating iron via catechol groups, have been recently applied as versatile carriers of functional cargo. In the present study, we show that MECAM and the MECAM-ampicillin conjugate 3 transport iron into Pseudomonas aeruginosa cells via the catechol-type outer membrane transporters PfeA and PirA and DOTAM solely via PirA. Differential proteomics and quantitative real-time polymerase chain reaction (qRT-PCR) showed that MECAM import induced the expression of pfeA , whereas 3 led to an increase in the expression of pfeA and ampc , a gene conferring ampicillin resistance. The presence of DOTAM did not induce the expression of pirA but upregulated the expression of two zinc transporters ( cntO and PA0781 ), pointing out that bacteria become zinc starved in the presence of this compound. Iron uptake experiments with radioactive
55 Fe demonstrated that import of this nutrient by MECAM and DOTAM was as efficient as with the natural siderophore enterobactin. The study provides a functional validation for DOTAM- and MECAM-based artificial siderophore mimetics as vehicles for the delivery of cargo into Gram-negative bacteria.- Published
- 2022
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22. Comparing α-Quartz-Induced Cytotoxicity and Interleukin-8 Release in Pulmonary Mono- and Co-Cultures Exposed under Submerged and Air-Liquid Interface Conditions.
- Author
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Friesen A, Fritsch-Decker S, Hufnagel M, Mülhopt S, Stapf D, Hartwig A, and Weiss C
- Subjects
- Cell Culture Techniques, Coculture Techniques, Epithelial Cells metabolism, Lung metabolism, Interleukin-8 metabolism, Quartz toxicity
- Abstract
The occupational exposure to particles such as crystalline quartz and its impact on the respiratory tract have been studied extensively in recent years. For hazard assessment, the development of physiologically more relevant in-vitro models, i.e., air-liquid interface (ALI) cell cultures, has greatly progressed. Within this study, pulmonary culture models employing A549 and differentiated THP-1 cells as mono-and co-cultures were investigated. The different cultures were exposed to α-quartz particles (Min-U-Sil5) with doses ranging from 15 to 66 µg/cm
2 under submerged and ALI conditions and cytotoxicity as well as cytokine release were analyzed. No cytotoxicity was observed after ALI exposure. Contrarily, Min-U-Sil5 was cytotoxic at the highest dose in both submerged mono- and co-cultures. A concentration-dependent release of interleukin-8 was shown for both exposure types, which was overall stronger in co-cultures. Our findings showed considerable differences in the toxicological responses between ALI and submerged exposure and between mono- and co-cultures. A substantial influence of the presence or absence of serum in cell culture media was noted as well. Within this study, the submerged culture was revealed to be more sensitive. This shows the importance of considering different culture and exposure models and highlights the relevance of communication between different cell types for toxicological investigations.- Published
- 2022
- Full Text
- View/download PDF
23. RIP140 inhibits glycolysis-dependent proliferation of breast cancer cells by regulating GLUT3 expression through transcriptional crosstalk between hypoxia induced factor and p53.
- Author
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Jacquier V, Gitenay D, Fritsch S, Bonnet S, Győrffy B, Jalaguier S, Linares LK, Cavaillès V, and Teyssier C
- Subjects
- Basic Helix-Loop-Helix Transcription Factors metabolism, Cell Proliferation genetics, Female, Glucose Transporter Type 3 genetics, Glucose Transporter Type 3 metabolism, Glycolysis genetics, Humans, Hypoxia, Nuclear Receptor Interacting Protein 1, Breast Neoplasms genetics, Breast Neoplasms pathology, Tumor Suppressor Protein p53 genetics, Tumor Suppressor Protein p53 metabolism
- Abstract
Glycolysis is essential to support cancer cell proliferation, even in the presence of oxygen. The transcriptional co-regulator RIP140 represses the activity of transcription factors that drive cell proliferation and metabolism and plays a role in mammary tumorigenesis. Here we use cell proliferation and metabolic assays to demonstrate that RIP140-deficiency causes a glycolysis-dependent increase in breast tumor growth. We further demonstrate that RIP140 reduces the transcription of the glucose transporter GLUT3 gene, by inhibiting the transcriptional activity of hypoxia inducible factor HIF-2α in cooperation with p53. Interestingly, RIP140 expression was significantly associated with good prognosis only for breast cancer patients with tumors expressing low GLUT3, low HIF-2α and high p53, thus confirming the mechanism of RIP140 anti-tumor activity provided by our experimental data. Overall, our work establishes RIP140 as a critical modulator of the p53/HIF cross-talk to inhibit breast cancer cell glycolysis and proliferation., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
24. The film-forming Pichia spp. in a winemaker's toolbox: A simple isolation procedure and their performance in a mixed-culture fermentation of Vitis vinifera L. cv. Gewürztraminer must.
- Author
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Scansani S, van Wyk N, Nader KB, Beisert B, Brezina S, Fritsch S, Semmler H, Pasch L, Pretorius IS, von Wallbrunn C, Schnell S, and Rauhut D
- Subjects
- Fermentation, Pichia, Saccharomyces cerevisiae, Vitis, Wine analysis
- Abstract
Certain yeast species belonging to the Pichia genus are known to form a distinctive film on grape must and wine. In a mixed-culture type fermentation, Pichia spp. (P. kluyveri in particular) are known to impart beneficial oenological attributes. In this study, we report on an easy isolation method of Pichia spp. from grape must by exploiting their film-forming capacity on media containing 10% ethanol. We isolated and identified two Pichia species, namely Pichia kudriavzevii and Pichia kluyveri, and subsequently co-inoculated them with Saccharomyces cerevisiae to ferment Gewürztraminer musts. Noteworthy differences included a significant increase in the 2-phenethyl acetate levels with the P. kluyveri co-fermentation and a general increase in ethyl esters with the P. kudriavzevii co-fermentation. Both Pichia co-inoculations yielded higher levels of glycerol in the final wines. Based on all the wine parameters we tested, the P. kluyveri strain that was isolated performed similarly to a commercial P. kluyveri strain., (Copyright © 2022 Elsevier B.V. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
25. [Artificial Intelligence: Infrastructures and Prerequisites at European Level].
- Author
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Fritsch S, Maassen O, and Riedel M
- Subjects
- Europe, Humans, Algorithms, Artificial Intelligence
- Abstract
The application of artificial intelligence (AI) is often associated with the use of large amounts of data for the construction of AI models and algorithms. This data should ideally comply with the FAIR Data principles, i.e. being findable, accessible, interoperable and reusable. However, the handling of health data poses a particular challenge in this context. In this article, we highlight the challenges of the data usage for AI in medicine using the example of anaesthesia and intensive care medicine. We discuss the current situation but also the obstacles for a wider application of AI in medicine in Europe and give suggestions how to solve the different issues. The article covers different subjects like data protection, research data infrastructures and approval of medical products. Finally, this article shows how it can nevertheless be possible to establish a secure and at the same time effective handling of data for use in AI at the European level despite its unneglectable difficulties., Competing Interests: Erklärung zu finanziellen Interessen Forschungsförderung erhalten: nein; Honorar/geldwerten Vorteil für Referententätigkeit erhalten: nein; Bezahlter Berater/interner Schulungsreferent/Gehaltsempfänger: nein; Patent/Geschäftsanteile/Aktien (Autor/Partner, Ehepartner, Kinder) an im Bereich der Medizin aktiven Firma: nein; Patent/Geschäftsanteile/Aktien (Autor/Partner, Ehepartner, Kinder) an zu Sponsoren dieser Fortbildung bzw. durch die Fortbildung in ihren Geschäftsinteressen berührten Firma: nein Erklärung zu nichtfinanziellen Interessen Die Autorinnen/Autoren geben an, dass kein Interessenkonflikt besteht., (Thieme. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
26. [Usage of Artificial Intelligence in the Combat against the COVID-19 Pandemic].
- Author
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Fritsch S, Sharafutdinov K, Schuppert A, and Bickenbach J
- Subjects
- Algorithms, Humans, Pandemics prevention & control, Artificial Intelligence, COVID-19
- Abstract
The COVID-19 pandemic is a global health emergency of historic dimension. In this situation, researchers worldwide wanted to help manage the pandemic by using artificial intelligence (AI). This narrative review aims to describe the usage of AI in the combat against COVID-19. The addressed aspects encompass AI algorithms for analysis of thoracic X-rays or CTs, prediction models for severity and outcome of the disease, AI applications in development of new drugs and vaccines as well as forecasting models for spread of the virus. The review shows, which approaches were pursued, and which were successful., Competing Interests: Erklärung zu finanziellen Interessen Forschungsförderung erhalten: nein; Honorar/geldwerten Vorteil für Referententätigkeit erhalten: nein; Bezahlter Berater/interner Schulungsreferent/Gehaltsempfänger: nein; Patent/Geschäftsanteile/Aktien (Autor/Partner, Ehepartner, Kinder) an im Bereich der Medizin aktiven Firma: nein; Patent/Geschäftsanteile/Aktien (Autor/Partner, Ehepartner, Kinder) an zu Sponsoren dieser Fortbildung bzw. durch die Fortbildung in ihren Geschäftsinteressen berührten Firma: nein Erklärung zu nichtfinanziellen Interessen Die Autorinnen/Autoren geben an, dass kein Interessenkonflikt besteht., (Thieme. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
27. Opportunistic use of catecholamine neurotransmitters as siderophores to access iron by Pseudomonas aeruginosa.
- Author
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Perraud Q, Kuhn L, Fritsch S, Graulier G, Gasser V, Normant V, Hammann P, and Schalk IJ
- Subjects
- Bacterial Proteins genetics, Bacterial Proteins metabolism, Catecholamines metabolism, Iron metabolism, Neurotransmitter Agents metabolism, Proteomics, Pseudomonas aeruginosa metabolism, Siderophores metabolism
- Abstract
Iron is an essential nutrient for bacterial growth and the cause of a fierce battle between the pathogen and host during infection. Bacteria have developed several strategies to access iron from the host, the most common being the production of siderophores, small iron-chelating molecules secreted into the bacterial environment. The opportunist pathogen Pseudomonas aeruginosa produces two siderophores, pyoverdine and pyochelin, and is also able to use a wide panoply of xenosiderophores, siderophores produced by other microorganisms. Here, we demonstrate that catecholamine neurotransmitters (dopamine, l-DOPA, epinephrine and norepinephrine) are able to chelate iron and efficiently bring iron into P. aeruginosa cells via TonB-dependent transporters (TBDTs). Bacterial growth assays under strong iron-restricted conditions and with numerous mutants showed that the TBDTs involved are PiuA and PirA. PiuA exhibited more pronounced specificity for dopamine uptake than for norepinephrine, epinephrine and l-DOPA, whereas PirA specificity appeared to be higher for l-DOPA and norepinephrine. Proteomic and qRT-PCR approaches showed pirA transcription and expression to be induced in the presence of all four catecholamines. Finally, the oxidative properties of catecholamines enable them to reduce iron, and we observed ferrous iron uptake via the FeoABC system in the presence of l-DOPA., (© 2020 Society for Applied Microbiology and John Wiley & Sons Ltd.)
- Published
- 2022
- Full Text
- View/download PDF
28. Thermodynamically Stable Cationic Dimers in Carboxyl-Functionalized Ionic Liquids: The Paradoxical Case of "Anti-Electrostatic" Hydrogen Bonding.
- Author
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Al-Sheakh L, Fritsch S, Appelhagen A, Villinger A, and Ludwig R
- Abstract
We show that carboxyl-functionalized ionic liquids (ILs) form doubly hydrogen-bonded cationic dimers (c
+ =c+ ) despite the repulsive forces between ions of like charge and competing hydrogen bonds between cation and anion (c+ -a- ). This structural motif as known for formic acid, the archetype of double hydrogen bridges, is present in the solid state of the IL 1-(carboxymethyl)pyridinium bis(trifluoromethylsulfonyl)imide [HOOC-CH2 -py][NTf2 ]. By means of quantum chemical calculations, we explored different hydrogen-bonded isomers of neutral (HOOC-(CH2 )n -py+ )2 (NTf2 - )2 , single-charged (HOOC-(CH2 )n -py+ )2 (NTf2 - ), and double-charged (HOOC- (CH2 )n -py+ )2 complexes for demonstrating the paradoxical case of "anti-electrostatic" hydrogen bonding (AEHB) between ions of like charge. For the pure doubly hydrogen-bonded cationic dimers (HOOC- (CH2 )n -py+ )2 , we report robust kinetic stability for n = 1-4. At n = 5, hydrogen bonding and dispersion fully compensate for the repulsive Coulomb forces between the cations, allowing for the quantification of the two equivalent hydrogen bonds and dispersion interaction in the order of 58.5 and 11 kJmol-1 , respectively. For n = 6-8, we calculated negative free energies for temperatures below 47, 80, and 114 K, respectively. Quantum cluster equilibrium (QCE) theory predicts the equilibria between cationic monomers and dimers by considering the intermolecular interaction between the species, leading to thermodynamic stability at even higher temperatures. We rationalize the H-bond characteristics of the cationic dimers by the natural bond orbital (NBO) approach, emphasizing the strong correlation between NBO-based and spectroscopic descriptors, such as NMR chemical shifts and vibrational frequencies.- Published
- 2022
- Full Text
- View/download PDF
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