901 results on '"Scott, I."'
Search Results
2. Autologous macrophage therapy for liver cirrhosis: a phase 2 open-label randomized controlled trial
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Brennan, Paul N., MacMillan, Mark, Manship, Thomas, Moroni, Francesca, Glover, Alison, Troland, Debbie, MacPherson, Iain, Graham, Catriona, Aird, Rhona, Semple, Scott I. K., Morris, David M., Fraser, Alasdair R., Pass, Chloe, McGowan, Neil W. A., Turner, Marc L., Manson, Lynn, Lachlan, Neil J., Dillon, John F., Kilpatrick, Alastair M., Campbell, John D. M., Fallowfield, Jonathan A., and Forbes, Stuart J.
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- 2025
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3. IRF-1 Regulates Mitochondrial Respiration and Intrinsic Apoptosis Under Metabolic Stress through ATP Synthase Ancillary Factor TMEM70
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Sun, ChongXiu, Sun, Haotian, Wei, Jiahao, Fan, Xing, Simon, Scott I., and Passerini, Anthony G.
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- 2024
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4. On effective constructions of existentially closed groups
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Scott, I
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Mathematics - Logic - Abstract
Existentially closed groups are, informally, groups that contain solutions to every consistent finite system of equations and inequations. They were introduced in 1951 in an algebraic context and subsequent research elucidated deep connections with group theory and computability theory. We continue this investigation, with particular emphasis on illuminating the relationship with computability theory. In particular, we show that existentially closed groups can be built at the level of the halting problem and that this is optimal. Moreover, using the the theory of the enumeration degrees and some work of Martin Ziegler in computable group theory, we show that the previous result relativises in a somewhat subtle way. We then tease apart the complexity contributed by ``global'' and ``local'' structure, showing that the finitely generated subgroups have complexity at the level of the PA degrees. Finally, we investigate the computability-theoretic complexity of omitting the non-principal quantifier-free types from a list of types, from which we obtain an upper bound on the complexity of building two existentially closed groups that are ``as different as possible''., Comment: 27 pages; comments welcome!
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- 2024
5. Neutrophil Granulopoiesis Optimized Through Ex Vivo Expansion of Hematopoietic Progenitors in Engineered 3D Gelatin Methacrylate Hydrogels
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Cirves, Evan, Vargas, Alex, Wheeler, Erika E, Leach, Jonathan Kent, Simon, Scott I, and Gonzalez‐Fernandez, Tomas
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Engineering ,Biomedical Engineering ,Infectious Diseases ,Biodefense ,Stem Cell Research - Nonembryonic - Non-Human ,Regenerative Medicine ,Stem Cell Research ,Emerging Infectious Diseases ,Bioengineering ,Hematology ,5.2 Cellular and gene therapies ,Animals ,Gelatin ,Hydrogels ,Methacrylates ,Mice ,Neutrophils ,Hematopoietic Stem Cells ,Mice ,Inbred C57BL ,extramedullary granulopoiesis ,gelatin methacrylate ,hematopoietic stem and progenitor cells ,neutrophils ,Medicinal and Biomolecular Chemistry ,Medical Biotechnology ,Medical biotechnology ,Biomedical engineering - Abstract
Neutrophils are the first line of defense of the innate immune system. In response to methicillin-resistant Staphylococcus aureus infection in the skin, hematopoietic stem, and progenitor cells (HSPCs) traffic to wounds and undergo extramedullary granulopoiesis, producing neutrophils necessary to resolve the infection. This prompted the engineering of a gelatin methacrylate (GelMA) hydrogel that encapsulates HSPCs within a matrix amenable to subcutaneous delivery. The authors study the influence of hydrogel mechanical properties to produce an artificial niche for granulocyte-monocyte progenitors (GMPs) to efficiently expand into functional neutrophils that can populate infected tissue. Lin-cKIT+ HSPCs, harvested from fluorescent neutrophil reporter mice, are encapsulated in GelMA hydrogels of varying polymer concentration and UV-crosslinked to produce HSPC-laden gels of specific stiffness and mesh sizes. Softer 5% GelMA gels yield the most viable progenitors and effective cell-matrix interactions. Compared to suspension culture, 5% GelMA results in a twofold expansion of mature neutrophils that retain antimicrobial functions including degranulation, phagocytosis, and ROS production. When implanted dermally in C57BL/6J mice, luciferase-expressing neutrophils expanded in GelMA hydrogels are visualized at the site of implantation for over 5 days. They demonstrate the potential of GelMA hydrogels for delivering HSPCs directly to the site of skin infection to promote local granulopoiesis.
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- 2024
6. Addressing the Elephant in the Room: Exploring the Impostor Phenomenon in Evaluation
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John M. LaVelle, Natalie D. Jones, and Scott I. Donaldson
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The impostor phenomenon is a psychological construct referring to a range of negative emotions associated with a person's perception of their own "fraudulent competence" in a field or of their lack of skills necessary to be successful in that field. Anecdotal evidence suggests that many practicing evaluators have experienced impostor feelings, but lack a framework in which to understand their experiences and the forums in which to discuss them. This paper summarizes the literature on the impostor phenomenon, applies it to the field of evaluation, and describes the results of an empirical, quantitatively focused study which included open-ended qualitative questions exploring impostorism in 323 practicing evaluators. The results suggest that impostor phenomenon in evaluators consists of three constructs: Discount, Luck, and Fake. Qualitative data analysis suggests differential coping strategies for men and women. Thematic analysis guided the development of a set of proposed solutions to help lessen the phenomenon's detrimental effects for evaluators.
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- 2024
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7. Correction to: Lenvatinib inhibits the growth of gastric cancer patient‑derived xenografts generated from a heterogeneous populations
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Karalis, John D., Yoon, Lynn Y., Hammer, Suntrea T. G., Hong, Changjin, Zhu, Min, Nassour, Ibrahim, Ju, Michelle R., Xiao, Shu, Castro‑Dubon, Esther C., Agrawal, Deepak, Suarez, Jorge, Reznik, Scott I., Mansour, John C., Polanco, Patricio M., Yopp, Adam C., Zeh III, Herbert J., Hwang, Tae Hyun, Zhu, Hao, Porembka, Matthew R., and Wang, Sam C.
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- 2024
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8. CD163+ macrophages in the triple-negative breast tumor microenvironment are associated with improved survival in the Women’s Circle of Health Study and the Women’s Circle of Health Follow-Up Study
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Omilian, Angela R., Cannioto, Rikki, Mendicino, Lucas, Stein, Leighton, Bshara, Wiam, Qin, Bo, Bandera, Elisa V., Zeinomar, Nur, Abrams, Scott I., Hong, Chi-Chen, Yao, Song, Khoury, Thaer, and Ambrosone, Christine B.
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- 2024
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9. Deep learning and genome-wide association meta-analyses of bone marrow adiposity in the UK Biobank
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Wei Xu, Ines Mesa-Eguiagaray, David M. Morris, Chengjia Wang, Calum D. Gray, Samuel Sjöström, Giorgos Papanastasiou, Sammy Badr, Julien Paccou, Xue Li, Paul R. H. J. Timmers, Maria Timofeeva, Susan M. Farrington, Malcolm G. Dunlop, Scott I. Semple, Tom MacGillivray, Evropi Theodoratou, and William P. Cawthorn
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Science - Abstract
Abstract Bone marrow adipose tissue is a distinct adipose subtype comprising more than 10% of fat mass in healthy humans. However, the functions and pathophysiological correlates of this tissue are unclear, and its genetic determinants remain unknown. Here, we use deep learning to measure bone marrow adiposity in the femoral head, total hip, femoral diaphysis, and spine from MRI scans of approximately 47,000 UK Biobank participants, including over 41,000 white and over 6300 non-white participants. We then establish the heritability and genome-wide significant associations for bone marrow adiposity at each site. Our meta-GWAS in the white population finds 67, 147, 134, and 174 independent significant single nucleotide polymorphisms, which map to 54, 90, 43, and 100 genes for the femoral head, total hip, femoral diaphysis, and spine, respectively. Transcriptome-wide association studies, colocalization analyses, and sex-stratified meta-GWASes in the white participants further resolve functional and sex-specific genes associated with bone marrow adiposity at each site. Finally, we perform a multi-ancestry meta-GWAS to identify genes associated with bone marrow adiposity across the different bone regions and across ancestry groups. Our findings provide insights into BMAT formation and function and provide a basis to study the impact of BMAT on human health and disease.
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- 2025
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10. Improving style transfer in dynamic contrast enhanced MRI using a spatio-temporal approach
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Tattersall, Adam G., Goatman, Keith A., Kershaw, Lucy E., Semple, Scott I. K., and Dahdouh, Sonia
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Style transfer in DCE-MRI is a challenging task due to large variations in contrast enhancements across different tissues and time. Current unsupervised methods fail due to the wide variety of contrast enhancement and motion between the images in the series. We propose a new method that combines autoencoders to disentangle content and style with convolutional LSTMs to model predicted latent spaces along time and adaptive convolutions to tackle the localised nature of contrast enhancement. To evaluate our method, we propose a new metric that takes into account the contrast enhancement. Qualitative and quantitative analyses show that the proposed method outperforms the state of the art on two different datasets.
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- 2023
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11. Systems-Informed PERMA + 4: Measuring Well-being and Performance at the Employee, Team, and Supervisor Levels
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Donaldson, Scott I., Donaldson, Stewart I., McQuaid, Michelle, and Kern, Margaret L.
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- 2024
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12. Can a single image processing algorithm work equally well across all phases of DCE-MRI?
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Tattersall, Adam G., Goatman, Keith A., Kershaw, Lucy E., Semple, Scott I. K., and Dahdouh, Sonia
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
Image segmentation and registration are said to be challenging when applied to dynamic contrast enhanced MRI sequences (DCE-MRI). The contrast agent causes rapid changes in intensity in the region of interest and elsewhere, which can lead to false positive predictions for segmentation tasks and confound the image registration similarity metric. While it is widely assumed that contrast changes increase the difficulty of these tasks, to our knowledge no work has quantified these effects. In this paper we examine the effect of training with different ratios of contrast enhanced (CE) data on two popular tasks: segmentation with nnU-Net and Mask R-CNN and registration using VoxelMorph and VTN. We experimented further by strategically using the available datasets through pretraining and fine tuning with different splits of data. We found that to create a generalisable model, pretraining with CE data and fine tuning with non-CE data gave the best result. This interesting find could be expanded to other deep learning based image processing tasks with DCE-MRI and provide significant improvements to the models performance.
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- 2023
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13. Findings from an Empirical Exploration of Evaluators' Values
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John M. LaVelle, Clayton L. Stephenson, Scott I. Donaldson, and Justin D. Hackett
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Psychological theory suggests that evaluators' individual values and traits play a fundamental role in evaluation practice, though few empirical studies have explored those constructs in evaluators. This paper describes an empirical study on evaluators' individual, work, and political values, as well as their personality traits to predict evaluation practice and methodological orientation. The results suggest evaluators value benevolence, achievement, and universalism; they lean socially liberal but are slightly more conservative on fiscal issues; and they tend to be conscientious, agreeable, and open to new experiences. In the workplace, evaluators value competence and opportunities for growth, as well as status and independence. These constructs did not statistically predict evaluation practice, though some workplace values and individual values predicted quantitative methodological orientation. We conclude by discussing strengths, limitations, and next steps for this line of research.
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- 2024
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14. Integrating competency-based, interprofessional teamwork education for students: guiding principles to support current needs and future directions
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Kimberly N. Williams, Elizabeth H. Lazzara, Jessica Hernandez, David Klocko, Neethu Chandran, Shannon L. Paquette, Richard Preble, Mozhdeh Sadighi, Bau Tran, Molly Kilcullen, Robert Rege, Gary Reed, Eduardo Salas, Scott I. Tannenbaum, and Philip E. Greilich
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teamwork training ,interprofessional ,competency-based medical education ,healthcare education ,curriculum design ,implementation ,Medicine (General) ,R5-920 - Abstract
Interprofessional teamwork is vital to effective patient care, and targeting healthcare learners earlier in their education can lead to greater improvement in confidence and competence in teamwork skills. Despite this, institutions have continued struggling to integrate competency-based interprofessional teamwork curriculum in undergraduate health care professions’ education. The current article provides guidance related to design, implementation, and assessment for institutions seeking to implement competency-based teamwork education and training strategies for healthcare students. Guiding principles and strategies for curricular design focus on conducting thorough interprofessional needs analyses and building transportable, evidence-based competencies that apply across professions. For implementation, key principles center on strategies to ensure adequate professional representation and faculty development. Assessment considerations focus on building infrastructure for evaluation that spans professional schools. These strategies aim to create a robust, effective, and sustainable IPE curriculum that enhances collaboration and teamwork among future healthcare professionals. By addressing the key areas of design, implementation, and assessment, this article offers comprehensive guidelines for advancing interprofessional education. We believe incorporating the key guiding principles and strategies from this paper will enable institutions to integrate teamwork education and training more effectively into undergraduate healthcare training, which will facilitate institutions’ ability to ensure learners are “team ready” as they transition into the workforce after graduation.
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- 2025
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15. The C-type lectin domain of CD62P (P-selectin) functions as an integrin ligand
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Takada, Yoko K, Simon, Scott I, and Takada, Yoshikazu
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Biochemistry and Cell Biology ,Biological Sciences ,2.1 Biological and endogenous factors ,Protein Domains ,Lectins ,C-Type ,Humans ,Animals ,CHO Cells ,Cricetulus ,P-Selectin ,Recombinant Proteins ,Ligands ,Mutation ,Integrin alphaVbeta3 ,Membrane Glycoproteins ,Membrane Proteins ,ADAM Proteins ,Protein Binding ,Allosteric Site ,Cell Communication ,Cell Adhesion ,Biological sciences ,Biomedical and clinical sciences - Abstract
Recognition of integrins by CD62P has not been reported and this motivated a docking simulation using integrin αvβ3 as a target. We predicted that the C-type lectin domain of CD62P functions as a potential integrin ligand and observed that it specifically bound to soluble β3 and β1 integrins. Known inhibitors of the interaction between CD62P-PSGL-1 did not suppress the binding, whereas the disintegrin domain of ADAM-15, a known integrin ligand, suppressed recognition by the lectin domain. Furthermore, an R16E/K17E mutation in the predicted integrin-binding interface located outside of the glycan-binding site within the lectin domain, strongly inhibited CD62P binding to integrins. In contrast, the E88D mutation that strongly disrupts glycan binding only slightly affected CD62P-integrin recognition, indicating that the glycan and integrin-binding sites are distinct. Notably, the lectin domain allosterically activated integrins by binding to the allosteric site 2. We conclude that CD62P-integrin binding may function to promote a diverse set of cell-cell adhesive interactions given that β3 and β1 integrins are more widely expressed than PSGL-1 that is limited to leukocytes.
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- 2023
16. Insights from an AIMBE Workshop: Diversifying Paths to Academic Leadership
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Pruitt, Beth L, Chesler, Naomi C, Seltzer, Rena, Eniola-Adefeso, Omolola, Margulies, Susan S, Campo, Maritza Salazar, Simon, Scott I, Grimm, Michele J, Mandell, Sarah, Alleyne, Andrew, West, Jennifer L, and Desai, Tejal A
- Abstract
AbstractThe American Institute for Medical and Biological Engineering (AIMBE) hosted a virtual symposium titled “Diversifying Paths to Academic Leadership” on January 27 and 28, 2022. The symposium sought to educate the community on the opportunities for and impact of leadership by biomedical engineering faculty, to encourage and invite women faculty, especially women of color, to consider and prepare to pursue leadership roles, to educate faculty on the expectations and duties of these roles, and to highlight experiences and paths to leadership of women engineering leaders. Here we review the main outcomes of the symposium to provide perspective on (1) personal visioning and positioning for leadership, (2) negotiating for success in leadership positions, and (3) leadership strategies for success specific to women faculty and where applicable, faculty of color.
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- 2023
17. Monitoring the Official YouTube Channels of E-Cigarette Companies: A Thematic Analysis
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Donaldson, Scott I., Dormanesh, Allison, Perez, Cindy, Zaffer, Muhammad O., Majmundar, Anuja, Unger, Jennifer B., and Allem, Jon-Patrick
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Background: E-cigarette companies use YouTube to foster brand awareness, market their products, and interact with current and future tobacco users. However, research on the official YouTube channels of e-cigarette companies is limited. This study determined the themes of, and degree of user engagement with, videos posted to the official channels of e-cigarette companies on YouTube. Methods: Data were collected from the official YouTube channels of seven e-cigarette companies by scraping (i.e., electronically copying) the videos. The earliest video was posted on October 10, 2013, and the most recent video was posted on April 22, 2021 (n = 260). An inductive approach was used to identify themes in the data. User engagement with posts including number of likes, dislikes, and comments were also collected. Results: Prevalent themes included branding (n = 250 of 260 videos, 96%), youth use (n = 222, 85%), and tobacco use (n = 210, 81%), while less common themes included misleading health statements (n = 4, 2%), personal choice (n = 4, 2%), and antitobacco (n = 2, 1%). Videos that contained the themes testimonial, product design features, and instructional received the highest mean number of likes. Videos that contained the themes antitobacco, cessation, and testimonial received the highest mean number of dislikes. The 260 videos in this study were collectively viewed 6,619,700 times as of May 5, 2021. Conclusions: Videos from the official YouTube channels of seven e-cigarette companies often focused on branding and user experience but rarely mentioned cessation. While videos about cessation were rare, they received the second highest mean number of dislikes. Future research should assess the impact of exposure to e-cigarette-related content on YouTube and e-cigarette-related attitudes and behaviors.
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- 2023
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18. Guided Anatomy: Embedding Magnetic Resonance Imaging in Teaching and Research at Bristol
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Abbott Paterson, Scott I., Spear, Michelle, Rea, Paul M., Series Editor, and Gröning, Flora, editor
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- 2024
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19. The seroprevalence and spatial distribution of liver fluke infection in a sample of West Coast and Canterbury dairy herds
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Dowling, A., Lawrence, K.E., Howe, L., Scott, I., and Pomroy, W.
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- 2025
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20. A Designed Host Defense Peptide for the Topical Treatment of MRSA-Infected Diabetic Wounds
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Vargas, Alex, Garcia, Gustavo, Rivara, Kathryn, Woodburn, Kathryn, Clemens, Louis Edward, and Simon, Scott I
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Microbiology ,Biological Sciences ,Infectious Diseases ,Emerging Infectious Diseases ,Wound Healing and Care ,Diabetes ,Antimicrobial Resistance ,Biodefense ,5.1 Pharmaceuticals ,2.1 Biological and endogenous factors ,Infection ,Skin ,Metabolic and endocrine ,Animals ,Mice ,Anti-Bacterial Agents ,Antimicrobial Cationic Peptides ,Diabetes Mellitus ,Experimental ,Gram-Negative Bacteria ,Gram-Positive Bacteria ,Methicillin-Resistant Staphylococcus aureus ,Wound Infection ,Administration ,Topical ,antimicrobial peptides ,designed Host Defense Peptide ,MRSA ,foot ulcers ,TALLYHO ,diabetes ,neutrophils ,wound healing ,Other Chemical Sciences ,Genetics ,Other Biological Sciences ,Chemical Physics ,Biochemistry and cell biology ,Medicinal and biomolecular chemistry - Abstract
Diabetes mellitus is a chronic disease characterized by metabolic dysregulation which is frequently associated with diabetic foot ulcers that result from a severely compromised innate immune system. The high levels of blood glucose characteristic of diabetes cause an increase in circulating inflammatory mediators, which accelerate cellular senescence and dampen antimicrobial activity within dermal tissue. In diabetic wounds, bacteria and fungi proliferate in a protective biofilm forming a structure that a compromised host defense system cannot easily penetrate, often resulting in chronic infections that require antimicrobial intervention to promote the healing process. The designed host defense peptide (dHDP) RP557 is a synthesized peptide whose sequence has been derived from naturally occurring antimicrobial peptides (AMPs) that provide the first line of defense against invading pathogens. AMPs possess an amphipathic α-helix or β-sheet structure and a net positive charge that enables them to incorporate into pathogen membranes and perturb the barrier function of Gram-positive and Gram-negative bacteria along with fungi. The capacity of skin to resist infections is largely dependent upon the activity of endogenous AMPs that provided the basis for the design and testing of RP557 for the resolution of wound infections. In the current study, the topical application of RP557 stopped bacterial growth in the biofilm of methicillin-resistant Staphylococcus aureus (MRSA) USA300 infected wounds on the flanks of clinically relevant diabetic TALLYHO mice. Topical application of RP557 reduced bacterial load and accelerated wound closure, while wound size in control diabetic mice continued to expand. These studies demonstrate that RP557 reduces or eliminates an infection in its biofilm and restores wound-healing capacity.
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- 2023
21. E-cigarette imagery in Netflix scripted television and movies popular among young adults: A content analysis
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Allem, Jon-Patrick, Van Valkenburgh, Shawn P, Donaldson, Scott I, Dormanesh, Allison, Kelley, Terence C, and Rosenthal, Erica L
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Biological Psychology ,Clinical and Health Psychology ,Psychology ,Applied and Developmental Psychology ,Prevention ,Basic Behavioral and Social Science ,Behavioral and Social Science ,Tobacco ,Tobacco Smoke and Health ,E-cigarettes ,Film ,Television ,Vaping ,Young adults ,Applied and developmental psychology ,Biological psychology ,Clinical and health psychology - Abstract
IntroductionResearch is needed to understand the frequency of e-cigarette impressions in scripted television and movies, especially in scripted content with characters and storylines that may appeal to young adults. This study aimed to determine the extent of e-cigarette-related imagery and dialogue in Netflix content popular with young adults. We also determine the demographics and character qualities of actors shown holding e-cigarettes.MethodsNielsen ratings data were used to compile a list of the most popular Netflix original films and TV shows among U.S. viewers 18-24 years old between June 1, 2020, and May 31, 2021. We used a sample of 12 films and 113 TV episodes from 12 series. Three coders were trained to analyze a total of 101 h of content for the presence of e-cigarettes, level of use, type of characters holding e-cigarettes, brand visibility, and the presence of vaping-related dialogue. Twenty percent of all episodes/films were double coded to ensure reliability.ResultsOut of 125 titles, 16 (13%) had e-cigarette-related content. Thirteen titles (10%) showed at least one character holding an e-cigarette, and three others mentioned vaping without showing e-cigarettes. The total time of e-cigarettes onscreen amounted to 399 s and the average screen time for e-cigarettes was 31 s. Ninety-nine percent of the time an e-cigarette appeared on screen it was being held by a character.ConclusionThis study documented recent e-cigarette imagery found on Netflix and demonstrates the need for health communication campaigns to denormalize e-cigarette use, particularly among susceptible populations, such as young adults.
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- 2022
22. The use of a Bayesian latent class model to estimate the test characteristics of three liver fluke diagnostic tests under New Zealand field conditions
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Dowling, A., Lawrence, K.E., Scott, I., Howe, L., and Pomroy, W.E.
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- 2024
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23. Dynamic structural equation models synthesize ecosystem dynamics constrained by ecological mechanisms
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James T. Thorson, Alexander G. Andrews III, Timothy E. Essington, and Scott I. Large
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causal model ,graphical model ,qualitative network model ,simultaneous equation model ,structural equation model ,vector‐autoregressive model ,Ecology ,QH540-549.5 ,Evolution ,QH359-425 - Abstract
Abstract Ecological analyses typically involve many interacting variables. Ecologists often specify lagged interactions in community dynamics (i.e. vector‐autoregressive models) or simultaneous interactions (e.g. structural equation models), but there is less familiarity with dynamic structural equation models (DSEM) that can include any simultaneous or lagged effect in multivariate time‐series analysis. We propose a novel approach to parameter estimation for DSEM, which involves constructing a Gaussian Markov random field (GMRF) representing simultaneous and lagged path coefficients, and then fitting this as a generalized linear mixed model to missing and/or non‐normal data. We provide a new R‐package dsem, which extends the ‘arrow interface’ from path analysis to represent user‐specified lags when constructing the GMRF. We also outline how the resulting nonseparable precision matrix can generalize existing separable models, for example, for time‐series and species interactions in a vector‐autoregressive model. We first demonstrate dsem by simulating a two‐species vector‐autoregressive model based on wolf–moose interactions on Isle Royale. We show that DSEM has improved precision when data are missing relative to a conventional dynamic linear model. We then demonstrate DSEM via two contrasting case studies. The first identifies a trophic cascade where decreased sunflower starfish has increased urchin and decreased kelp densities, while sea otters have a simultaneous positive effect on kelp in the California Current from 1999 to 2018. The second estimates how declining sea ice has decreased cold‐water habitats, driving a decreased density for fall copepod predation and inhibiting early‐life survival for Alaska pollock from 1963 to 2023. We conclude that DSEM can be fitted efficiently as a GLMM involving missing data, while allowing users to specify both simultaneous and lagged effects in a time‐series structural model. DSEM then allows conceptual models (developed with stakeholder input or from ecological expertise) to be fitted to incomplete time series and provides a simple interface for granular control over the number of estimated time‐series parameters. Finally, computational methods are sufficiently simple that DSEM can be embedded as component within larger (e.g. integrated population) models. We therefore recommend greater exploration and performance testing for DSEM relative to familiar time‐series forecasting methods.
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- 2024
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24. Aryl hydrocarbon receptor suppresses STING-mediated type I IFN expression in triple-negative breast cancer
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Jeffrey C. Martin, Tatiane da Silva Fernandes, Kanita A. Chaudhry, Masanori Oshi, Scott I. Abrams, Kazuaki Takabe, Spencer R. Rosario, and Anna Bianchi-Smiraglia
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Aryl hydrocarbon receptor ,Triple-negative breast cancer ,BRCA1/2 mutations ,PARP inhibitors ,cGAS-STING ,Type I interferons ,Medicine ,Science - Abstract
Abstract Triple-negative breast cancer (TNBC) is one of the most aggressive types of cancer. Despite decades of intense investigation, treatment options remain limited, and rapid recurrence with distant metastases remains a significant challenge. Cancer cell-intrinsic production of cytokines such as type I interferons (IFN-I) is a known potent modulator of response to therapy in many cancers, including TNBC, and can influence therapeutic outcome. Here, we report that, in TNBC systems, the aryl hydrocarbon receptor (AhR) suppresses IFN-I expression via inhibition of STImulator of Interferon Genes (STING), a key mediator of interferon production. Intratumoral STING activity is essential in mediating the efficacy of PARP inhibitors (PARPi) which are used in the treatment of cancers harboring BRCA1 deficiency. We find that, in TNBC cells, PARPi treatment activates AhR in a BRCA1 deficiency-dependent manner, thus suggesting the presence of a negative feedback loop aimed at modulating PARPi efficacy. Importantly, our results indicate that the combined inhibition of PARP and AhR is superior in elevating IFN-I expression as compared to PARPi-alone. Thus, AhR inhibition may allow for enhanced IFN-I production upon PARPi in BRCA1-deficient breast cancers, most of which are of TNBC origin, and may represent a therapeutically viable strategy to enhance PARPi efficacy.
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- 2024
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25. Defining Volume Targets for Regionalization of Pancreaticoduodenectomy, Esophagectomy, and Major Lung Resection Centers to Improve Oncologic and Surgical Outcomes
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Ju, Michelle R., Karalis, John D., Leonard, Grey, Mansour, John C., Karagkounis, Georgios, Wang, Sam C., Reznik, Scott I., and Porembka, Matthew R.
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- 2024
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26. The PERMA + 4 Short Scale: A Cross-Cultural Empirical Validation Using Item Response Theory
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Donaldson, Scott I., Donaldson, Stewart I., McQuaid, Michelle, and Kern, Margaret L.
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- 2023
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27. Association Between Exposure to Tobacco Content on Social Media and Tobacco Use
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Donaldson, Scott I, Dormanesh, Allison, Perez, Cindy, Majmundar, Anuja, and Allem, Jon-Patrick
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Paediatrics ,Biomedical and Clinical Sciences ,Tobacco ,Tobacco Smoke and Health ,Pediatric ,Substance Misuse ,3.1 Primary prevention interventions to modify behaviours or promote wellbeing ,Good Health and Well Being ,Adolescent ,Electronic Nicotine Delivery Systems ,Humans ,Social Media ,Tobacco Products ,Tobacco Use ,Young Adult - Abstract
ImportanceExposure to tobacco-related content on social media may foster positive attitudes toward tobacco products and brands, and influence the likelihood of initiating or continuing use of tobacco, especially among adolescents and young adults.ObjectiveTo perform the first systematic review and meta-analysis, to our knowledge, on studies that examined the association between exposure to tobacco content on social media and lifetime tobacco use, past 30-day tobacco use, and susceptibility to use tobacco among never users.Data sourcesTobacco, social media, and marketing search terms were entered into online databases, including MEDLINE, ISI Web of Science, Scopus, and PsychINFO. Study characteristics, including research design and methods, sampling strategy, and demographics, were assessed for each study.Study selectionStudies reporting odds ratios (ORs) for self-reported exposure to, or experimentally manipulated, tobacco content on social media and lifetime tobacco use, past 30-day tobacco, and susceptibility to use tobacco among never users. The systematic search produced 897 independent articles, of which 29 studies met inclusion criteria.Data extraction and synthesisA 3-level random-effects meta-analysis was used to estimate ORs, 95% CIs, and heterogeneity (I2) for each tobacco use outcome. Study quality and publication bias were assessed.Main outcomes and measuresLifetime tobacco use, past 30-day tobacco use, and susceptibility to use tobacco among never users. Tobacco use included e-cigarettes, cigarettes, and other (cigar, hookah, smokeless tobacco).ResultsThe total sample size across the 24 included datasets was 139 624, including 100 666 adolescents (72%), 20 710 young adults (15%), and 18 248 adults (13%). Participants who were exposed to tobacco content on social media, compared with those who were not exposed, had greater odds of reporting lifetime tobacco use (OR, 2.18; 95% CI, 1.54-3.08; I2 = 94%), past 30-day tobacco use (OR, 2.19; 95% CI, 1.79-2.67; I2 = 84%), and susceptibility to use tobacco among never users (OR, 2.08; 95% CI, 1.65-2.63; I2 = 73%). Subgroup analyses showed similar associations for tobacco promotions, active engagement, passive engagement, lifetime exposure to tobacco content, exposure to tobacco content on more than 2 platforms, and exposure to tobacco content among adolescents and young adults.Conclusions and relevanceFindings suggest that a comprehensive strategy to reduce the amount of tobacco content on social media should be developed by federal regulators. Such actions may have downstream effects on adolescent and young adult exposure to protobacco content, and ultimately tobacco use behaviors.
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- 2022
28. Changing source waters on the Northeast US Continental Shelf: Variation in nutrient supply and phytoplankton biomass
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Friedland, Kevin D., Fratantoni, Paula, Silver, Adrienne, Brady, Damian C., Gangopadhyay, Avijit, Large, Scott I., Morse, Ryan E., Townsend, David W., Friedrichs, Marjorie A.M., and Melrose, D. Christopher
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- 2024
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29. Assessment of accuracy of liver fluke diagnostic tests using the gold standard of total worm counts
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Dowling, A., Lawrence, K.E., Howe, L., Scott, I., and Pomroy, W.E.
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- 2024
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30. T Cell Exhaustion Markers in Multiple Myeloma Patients are Lower After Physical Activity Intervention
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Joseph, Janine M., Hillengass, Michaela, Cannioto, Rikki, Tario, Joseph D., Wallace, Paul K., Attwood, Kristopher, Groman, Adrienne, Jacobson, Hillary, Wittmeyer, Bryan, Mohammadpour, Hemn, Abrams, Scott I., Moysich, Kirsten B., and Hillengass, Jens
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- 2024
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31. Perspectives of people with spinal cord injury on a pain education resource
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Gabriel E. Fernandez, Kim D. Anderson, Roberta Vastano, Scott I. Frank, Linda E. Robayo, Nicholas P. Cherup, William Kochen, and Eva Widerström-Noga
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spinal cord injury ,chronic pain ,pain education ,neuropathic pain ,survey ,Public aspects of medicine ,RA1-1270 - Abstract
IntroductionSpinal cord injury (SCI) often leads to neuropathic pain that negatively affects quality of life. Several qualitative research studies in individuals with SCI who experience neuropathic pain indicate the lack of adequate information about pain. We previously developed an educational resource, the SeePain, based on scientific literature and a series of qualitative interviews of people with SCI, their significant others/family members, and SCI healthcare providers.MethodsHowever, to quantitatively evaluate the utility of this educational resource in a larger sample, we examined the agreement and usefulness ratings of statements regarding clarity/comprehensibility, content, and format of the SeePain, derived from the thematic analysis of our previous qualitative interviews. Participants completed a survey that provided a digital version of the SeePain and then rated their agreement/usefulness with the statements using numerical rating scales.ResultsThere were overall high perceived agreement and usefulness ratings regarding the SeePain’s clarity, content, and format. A factor analysis reduced the agreement and usefulness ratings into 4 components (content, clarity, format, and delivery medium). Group comparisons showed that individuals with higher education were more likely to endorse electronic and website formats, and the usefulness of a shorter version of the SeePain; females and younger individuals showed greater endorsement for clarity. Finally, higher pain intensity ratings were associated with greater agreement and usefulness of the content of the SeePain.DiscussionOverall, these results support the utility of the SeePain as a source of information regarding pain that may facilitate communication about pain and its management following SCI.
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- 2024
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32. mTOR contributes to endothelium-dependent vasorelaxation by promoting eNOS expression and preventing eNOS uncoupling.
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Wang, Yiying, Li, Qiannan, Zhang, Zhiyang, Peng, Kai, Zhang, Dai-Min, Yang, Qianlu, Passerini, Anthony G, Simon, Scott I, and Sun, ChongXiu
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Endothelium ,Animals ,Mammals ,Humans ,Mice ,Sirolimus ,Vasodilation ,Nitric Oxide Synthase Type III ,TOR Serine-Threonine Kinases ,Mechanistic Target of Rapamycin Complex 1 ,Mechanistic Target of Rapamycin Complex 2 ,Cardiovascular - Abstract
Clinically used inhibitors of mammalian target of rapamycin (mTOR) negatively impacts endothelial-dependent vasodilatation (EDD) through unidentified mechanisms. Here we show that either the endothelium-specific deletion of Mtor to inhibit both mTOR complexes, or depletion of Raptor or Rictor to disrupt mTORC1 or mTORC2, causes impaired EDD, accompanied by reduced NO in the serum of mice. Consistently, inhibition of mTOR decreases NO production by human and mouse EC. Specifically, inhibition of mTORC1 suppresses eNOS gene expression, due to impairment in p70S6K-mediated posttranscriptional regulation of the transcription factor KLF2 expression. In contrast to mTORC1 inhibition, a positive-feedback between MAPK (p38 and JNK) activation and Nox2 upregulation contributes to the excessive generation of reactive oxygen species (ROS), which causes eNOS uncoupling and decreased NO bioavailability in mTORC2-inhibited EC. Adeno-associated virus-mediated EC-specific overexpression of KLF2 or suppression of Nox2 restores EDD function in endothelial mTORC1- or mTORC2-inhibited mice.
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- 2022
33. Host cells subdivide nutrient niches into discrete biogeographical microhabitats for gut microbes
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Liou, Megan J, Miller, Brittany M, Litvak, Yael, Nguyen, Henry, Natwick, Dean E, Savage, Hannah P, Rixon, Jordan A, Mahan, Scott P, Hiyoshi, Hirotaka, Rogers, Andrew WL, Velazquez, Eric M, Butler, Brian P, Collins, Sean R, McSorley, Stephen J, Harshey, Rasika M, Byndloss, Mariana X, Simon, Scott I, and Bäumler, Andreas J
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Microbiology ,Medical Microbiology ,Biomedical and Clinical Sciences ,Biological Sciences ,Foodborne Illness ,Infectious Diseases ,Digestive Diseases ,Microbiome ,Biodefense ,Emerging Infectious Diseases ,2.2 Factors relating to the physical environment ,2.1 Biological and endogenous factors ,Infection ,Escherichia coli ,Gastrointestinal Microbiome ,Humans ,Nitrates ,Nutrients ,Salmonella typhimurium ,Enterobacterales ,Salmonella ,biogeography ,chemotaxis ,gut microbiota ,nitrate ,nutrient niches ,Immunology ,Biochemistry and cell biology ,Medical microbiology - Abstract
Changes in the microbiota composition are associated with many human diseases, but factors that govern strain abundance remain poorly defined. We show that a commensal Escherichia coli strain and a pathogenic Salmonella enterica serovar Typhimurium isolate both utilize nitrate for intestinal growth, but each accesses this resource in a distinct biogeographical niche. Commensal E. coli utilizes epithelial-derived nitrate, whereas nitrate in the niche occupied by S. Typhimurium is derived from phagocytic infiltrates. Surprisingly, avirulent S. Typhimurium was shown to be unable to utilize epithelial-derived nitrate because its chemotaxis receptors McpB and McpC exclude the pathogen from the niche occupied by E. coli. In contrast, E. coli invades the niche constructed by S. Typhimurium virulence factors and confers colonization resistance by competing for nitrate. Thus, nutrient niches are not defined solely by critical resources, but they can be further subdivided biogeographically within the host into distinct microhabitats, thereby generating new niche opportunities for distinct bacterial species.
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- 2022
34. Downregulation of IRF8 in alveolar macrophages by G-CSF promotes metastatic tumor progression
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Tzetzo, Stephanie L., Kramer, Elliot D., Mohammadpour, Hemn, Kim, Minhyung, Rosario, Spencer R., Yu, Han, Dolan, Melissa R., Oturkar, Chetan C., Morreale, Brian G., Bogner, Paul N., Stablewski, Aimee B., Benavides, Fernando J., Brackett, Craig M., Ebos, John M.L., Das, Gokul M., Opyrchal, Mateusz, Nemeth, Michael J., Evans, Sharon S., and Abrams, Scott I.
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- 2024
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35. Effect of elevated initial temperature on the detonation performance of high explosives
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Short, Mark, Anderson, Eric K., Voelkel, Stephen J., Chiquete, Carlos, and Jackson, Scott I.
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- 2024
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36. Insights from an AIMBE Workshop: Diversifying Paths to Academic Leadership
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Pruitt, Beth L., Chesler, Naomi C., Seltzer, Rena, Eniola-Adefeso, Omolola, Margulies, Susan S., Campo, Maritza Salazar, Simon, Scott I., Grimm, Michele J., Mandell, Sarah, Alleyne, Andrew, West, Jennifer L., and Desai, Tejal A.
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- 2023
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37. Collaborative, Two-Directional Live Streaming to Deliver Hands-on Dissection Experience during the COVID-19 Lockdown
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Johnson, Craig I., Hyde, Lucy E., Cornwall, Thomas, Ryan, Maeve, Zealley, Ed, Sparey, Kate, Paterson, Scott I., Spear, Michelle, Crusio, Wim E., Series Editor, Dong, Haidong, Series Editor, Radeke, Heinfried H., Series Editor, Rezaei, Nima, Series Editor, Steinlein, Ortrud, Series Editor, Xiao, Junjie, Series Editor, Varsou, Ourania, editor, Rea, Paul M., editor, and Welsh, Michelle, editor
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- 2023
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38. Exploring Relationships Between Internalizing Problems and Risky Sexual Behavior: A Twin Study
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Paulich, Katie N., Freis, Samantha M., Dokuru, Deepika R., Alexander, Jordan D., Vrieze, Scott I., Corley, Robin P., McGue, Matt, Hewitt, John K., and Stallings, Michael C.
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- 2023
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39. ASO Visual Abstract: Defining Volume Targets for Regionalization of Pancreaticoduodenectomy, Esophagectomy, and Major Lung Resection Centers to Improve Oncologic and Surgical Outcomes
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Ju, Michelle R., Karalis, John D., Leonard, Grey, Mansour, John C., Karagkounis, Georgios, Wang, Sam C., Reznik, Scott I., and Porembka, Matthew R.
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- 2024
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40. A preliminary study evaluating self-reported effects of cannabis and cannabinoids on neuropathic pain and pain medication use in people with spinal cord injury
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Kristiina Kinnunen, Linda E. Robayo, Nicholas P. Cherup, Scott I. Frank, and Eva Widerström-Noga
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cannabis ,cannabinoids ,neuropathic pain ,pain medication ,spinal cord injury ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Approximately 60% of individuals with a spinal cord injury (SCI) experience neuropathic pain, which often persists despite the use of various pharmacological treatments. Increasingly, the potential analgesic effects of cannabis and cannabinoid products have been studied; however, little research has been conducted among those with SCI-related neuropathic pain. Therefore, the primary objective of the study was to investigate the perceived effects of cannabis and cannabinoid use on neuropathic pain among those who were currently or had previously used these approaches. Additionally, the study aimed to determine if common pain medications are being substituted by cannabis and cannabinoids. Participants (N = 342) were recruited from existing opt-in listserv sources within the United States. Of those, 227 met the inclusion criteria and were enrolled in the study. The participants took part in an anonymous online survey regarding past and current use of cannabis and their perceived effects on neuropathic pain, including the use of pain medication. Those in the sample reported average neuropathic pain intensity scores over the past week of 6.8 ± 2.1 (0 to 10 scale), reflecting a high moderate to severe level of pain. Additionally, 87.9% noted that cannabis reduced their neuropathic pain intensity by more than 30%, and 92.3% reported that cannabis helped them to better deal with their neuropathic pain symptoms. Most participants (83.3%) also reported substituting their pain medications with cannabis, with the most substituted medication categories being opioids (47.0%), gabapentinoids (42.8%) and over-the-counter pain medications (42.2%). These preliminary results suggest that cannabis and cannabinoids may be effective in reducing neuropathic pain among those with SCI and may help to limit the need for certain pain medications.
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- 2023
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41. Smoking cessation, harm reduction, and biomarkers protocols in the PhenX Toolkit: Tools for standardized data collection
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Bierut, Laura Jean, Hendershot, Tabitha P., Benowitz, Neal L., Cummings, K. Michael, Mermelstein, Robin J., Piper, Megan E., Vrieze, Scott I., Wagener, Theodore L., Nelms, Mark D., Ives, Cataia, Maiese, Deborah, Hamilton, Carol M., and Swan, Gary E.
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- 2023
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42. Ulipristal acetate versus levonorgestrel-releasing intrauterine system for heavy menstrual bleeding (UCON): a randomised controlled phase III trial
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Whitaker, Lucy H.R., Middleton, Lee J., Daniels, Jane P., Williams, Alistair R.W., Priest, Lee, Odedra, Smita, Cheed, Versha, Stubbs, Clive E., Clark, T. Justin, Lumsden, Mary-Ann, Hapangama, Dharani K., Bhattacharya, Siladitya, Smith, Paul P., Nicholls, Elaine P., Roberts, Neil, Semple, Scott I., Saraswat, Lucky, Walker, Jane, Chodankar, Rohan R., and Critchley, Hilary O.D.
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- 2023
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43. The association between saving disposition and financial distress: A genetically informed approach
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Giannelis, Alexandros, Willoughby, Emily A., Corley, Robin, Hopfer, Christian, Hewitt, John K., Iacono, William G., Anderson, Jacob, Rustichini, Aldo, Vrieze, Scott I., McGue, Matt, and Lee, James J.
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- 2023
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44. Serum Interleukin 6 Level is Associated With Overall Survival and Treatment Response in Gastric and Gastroesophageal Junction Cancer
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Karalis, John D., Ju, Michelle R., Yoon, Lynn Y., Castro-Dubon, Esther C., Reznik, Scott I., Hammer, Suntrea T.G., Porembka, Matthew R., and Wang, Sam C.
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- 2023
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45. Dietary Effects on Monocyte Phenotypes in Subjects With Hypertriglyceridemia and Metabolic Syndrome
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Lian, Zeqin, Perrard, Xiao-Yuan Dai, Antony, Antu Kalathookunnel, Peng, Xueying, Xu, Lu, Ni, Jing, Zhang, Bingqian, O’Brien, Veronica, Saeed, Anum, Jia, Xiaoming, Hussain, Aliza, Yu, Bing, Simon, Scott I., Sacks, Frank M., Hoogeveen, Ron C., Ballantyne, Christie M., and Wu, Huaizhu
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- 2023
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46. Ulipristal acetate versus levonorgestrel-releasing intrauterine system for heavy menstrual bleeding: the UCON randomised controlled trial and mechanism of action study
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Lucy HR Whitaker, Lee J Middleton, Lee Priest, Smita Odedra, Versha Cheed, Elaine P Nicholls, Alistair RW Williams, Neil Roberts, Clive E Stubbs, Konstantios Tryposkiadis, Hannah Bensoussane, Rohan Chodankar, Alison A Murray, Moira Nicol, Aleksandra O Tsolova, Kaiming Yin, Marcos Cruz, Hui Wei Leow, Lucy E Kershaw, Suzanne L McLenachan, Graham McKillop, Jane Walker, Scott I Semple, T Justin Clark, Mary Ann Lumsden, Dharani K Hapangama, Lucky Saraswat, Siladitya Bhattacharya, Paul Smith, Jane Daniels, and Hilary OD Critchley
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heavy menstrual bleeding ,ulipristal acetate ,selective progesterone receptor modulator ,levonorgestrel releasing intrauterine system ,randomised controlled trial ,fibroid ,leiomyoma ,adenomyosis ,endometrium ,uterus ,quality of life ,amenorrhoea ,ultrasound ,progesterone receptor modulator endometrial associated changes ,drug-induced liver injury ,immunohistochemistry ,dynamic contrast-enhanced magnetic resonance imaging ,stereology ,urgent safety measures ,patient and public involvement ,Medicine - Abstract
Background Heavy menstrual bleeding affects one in four women and negatively impacts quality of life. The levonorgestrel-releasing intrauterine system is an effective long-term treatment but is discontinued by many due to unpredictable bleeding, or adverse effects. The selective progesterone receptor modulator ulipristal acetate is used to treat symptomatic fibroids but long-term efficacy for the symptom of heavy menstrual bleeding, irrespective of presence of fibroids, is unknown. Objectives To determine whether ulipristal acetate is more effective at reducing the burden of heavy menstrual bleeding than levonorgestrel-releasing intrauterine system after 12 months of treatment in women with and without fibroids. We investigated mechanism of action of ulipristal acetate in a subset of 20 women. Design Randomised, open-label, parallel group, multicentre trial with embedded mechanistic study. Setting Ten UK hospitals. Participants Women with heavy menstrual bleeding aged 18 and over with no contraindications to levonorgestrel-releasing intrauterine system or ulipristal acetate. Interventions Three 12-week treatment cycles of 5 mg ulipristal acetate daily, separated by 4-week treatment-free intervals, or continuous levonorgestrel-releasing intrauterine system following allocation in a 1 : 1 ratio using a web-based minimisation procedure. Main trial outcome measures Primary outcome was quality-of-life measured by menorrhagia multi-attribute scale at 12 months. Secondary outcomes included menstrual bleeding and patient satisfaction. Impact on fibroid size, endometrial appearance and liver function was also collected. Mechanistic study outcome Cellular markers for endometrial cell structure and function, determined from endometrial biopsies; volume of uterus and fibroids and microcirculation parameters were determined from magnetic resonance images. Results Sample size was increased from 220 to 302 as a result of temporary halt to recruitment due to concerns of ulipristal acetate hepatoxicity. Subsequent withdrawal of ulipristal acetate and the COVID-19 pandemic led to a premature closure of recruitment, with 118 women randomised to each treatment and 103 women completing 12-month menorrhagia multi-attribute scale scores prior to this point. Primary outcome scores substantially improved in both arms, but at 12 months there was no evidence of a difference between those receiving three cycles of ulipristal acetate [median score category: 76–99, interquartile range (51–75 to 100), n = 53] and levonorgestrel-releasing intrauterine system [median score category: 76–99, interquartile range (51–75 to 100), n = 50; adjusted odds ratio 0.55, 95% confidence interval 0.26 to 1.17; p = 0.12]. Rates of amenorrhoea were much higher in those allocated ulipristal acetate compared with the levonorgestrel-releasing intrauterine system (12 months: 64% vs. 25%, adjusted odds ratio 7.12, 95% confidence interval 2.29 to 22.2). There was no evidence of a difference in other participant-reported outcomes. There were no cases of endometrial malignancy and no hepatotoxicity due to ulipristal acetate use. Mechanistic study results Ulipristal acetate produced a reversible reduction in endometrial cell proliferation, as well as reversible alteration of other endometrial cellular markers. Ulipristal acetate did not produce a reduction in the volume of the uterus irrespective of coexisting fibroids, nor an effect on uterine microvascular blood flow. Limitations The urgent safety measures and premature closure of recruitment impacted final sample size. Conclusions We found no evidence of a difference in quality of life between the two treatments, but ulipristal acetate was superior to levonorgestrel-releasing intrauterine system at inducing amenorrhoea. Ulipristal acetate currently has restricted availability due to concerns regarding hepatotoxicity. Future work There is a need to develop new, safe, effective and fertility-sparing medical treatments for heavy menstrual bleeding. The observed acceptability and effectiveness of ulipristal acetate warrants further research into the selective progesterone receptor modulator class of pharmacological agents. Study registration This trial is registered as ISRCTN 20426843. Plain language summary What is the problem? Heavy menstrual bleeding is a common condition that affects the lives of many women. A hormone-releasing coil, fitted inside the womb, is effective in making periods lighter but can make them less regular. A medicine called ulipristal acetate or UPA, taken as a pill, has been shown to reduce rapidly menstrual bleeding in women with large, non-cancerous tumours in the womb, known as fibroids. It was not known whether UPA is effective in women who have heavy periods but do not have fibroids of any significant size. What did we plan to do? To find out which treatment was better at controlling heavy periods, 236 women were enrolled in a clinical trial where they received either the hormone coil or UPA. The choice of treatment was made at random by a computer rather than the wishes of researchers or patients, to ensure a fair comparison. Participants completed questionnaires about their symptoms and life quality at intervals up to 1 year. Twice during the trial, medicines regulatory authorities raised safety concerns about UPA causing liver problems. This resulted in the introduction of regular blood tests. The second time, recruitment to the trial stopped early. What did we find? Both treatments improved the symptoms of heavy menstrual bleeding in the majority of women. We found no evidence that UPA was better overall after 1 year of treatment, compared with the hormone coil, although fewer women on UPA continued to have periods. Laboratory studies on samples taken from the lining of the womb showed temporary changes due to UPA, which disappeared after treatment stopped. What does this mean? Both treatments improve the symptoms of menstrual bleeding and general wellbeing. Because of safety concerns UPA is not available for all women with heavy menstrual bleeding and new, safer medical treatments are needed. Scientific summary Background Heavy menstrual bleeding (HMB) is the most common gynaecological problem in women of reproductive age, affecting one in four women, and has adverse profound impact on health-related quality of life. Common causes of HMB include structural abnormalities such as uterine fibroids, adenomyosis and dysfunction of the endometrium. The levonorgestrel-releasing intrauterine system (LNG-IUS) is a proven, effective long-term treatment but about one-third of women cease use by two years due to unpredictable bleeding, hormonal adverse effects or lack of effectiveness. Furthermore, fibroids can make the LNG-IUS less effective. Alternative medical options for HMB exist, but are either less effective or associated with unacceptable adverse effects. Surgical interventions are effective at inducing bleeding control and improving quality of life but are typically incompatible with future fertility. Effective long-term medical treatments for women with HMB are needed. A class of drugs called selective progesterone receptor modulators (SPRMs) have potential to provide an effective oral treatment for HMB. SPRMs bind with progesterone receptors, resulting in tissue-specific effects in both myometrial and overlying endometrial tissue as well as shrinking uterine fibroids. The SPRM ulipristal acetate (UPA) has been successfully used to treat fibroids, but we do not know how effective UPA is for the treatment of women with HMB who do not have fibroids. Furthermore, there are uncertainties regarding the mechanism and location of action of UPA, as well as its longer-term safety. SPRMs induce distinctive, non-physiological endometrial changes, which can be confused with endometrial hyperplasia. More recently there has been concern regarding the potential for UPA to cause drug-induced liver injury (DILI). Post marketing surveillance reports resulted in a temporary halt in UPA use in 2018 and 2020. Use of UPA has since been reinstated since January 2021, albeit in a restricted context, reflecting the paucity of existing alternatives for HMB. Given these uncertainties, we designed the UCON trial to evaluate the safety, tolerability and effectiveness of UPA on HMB and to understand its mechanism of action. Clinical objectives Primary objective: to determine whether UPA is more effective at reducing the burden of HMB symptoms than LNG-IUS after 12 months of treatment. Secondary objectives: Ascertain whether UPA use beyond 3 months’ and up to 12 months’ duration is associated with histological changes to the endometrium and, if so, whether this compromises safety. Ascertain whether UPA is more effective than LNG-IUS in relation to menstrual blood loss, sexual activity, generic quality of life, satisfaction with treatment, patient-reported adverse events, and compliance at 3, 6 and 12 months. Determine the response to UPA and LNG-IUS treatment difference in the presence of uterine fibroids in terms of (1) alleviation of HMB and (2) change in uterine/fibroid volume. Collect data on liver function in women taking UPA, once safety concerns were raised. Mechanism of action study objectives To understand how UPA causes a reduction in menstrual bleeding and uterine/fibroid volume in women with HMB, we determined whether UPA administration: Alters endometrial cell function (e.g., and not limited to, proliferation, apoptosis, expression of steroid receptors, tumour suppressors and inflammatory mediators). Reduces blood plasma flow in the endometrium, uterine myometrium and fibroid tissue. Alters the volume fraction of the extracellular matrix in these tissues. Reduces uterine and fibroid volume. Design This was a randomised, open-label, parallel group, multicentre trial with embedded mechanistic study. Methods Setting The trial recruited participants in 10 sites in NHS hospital settings across the UK between 2015 and 2020. The mechanism of action study was conducted solely at the Edinburgh site. Participants For the main trial, informed consent was sought from premenopausal women (aged 18–50 years) with self-reported HMB, no contraindications to LNG-IUS or UPA. Those with uterine size greater than equivalent 14-week size or with submucosal fibroids >2cm were excluded. Other exclusion criteria relating to use of other treatments and current health status were applied, including history of severe hepatic impairment. Screening and randomisation Participants were recruited in gynaecology clinics by research nurses who screened patient referral letters. Following consent, haemoglobin and circulating estradiol levels were assessed, clinical history elicited and transvaginal and/or abdominal ultrasound and endometrial biopsy were obtained if not previously performed. Following this, and confirmation of eligibility, randomisation was via a web-based central service based at Birmingham Clinical Trials Unit to allocate women in a 1 : 1 ratio using a minimisation algorithm. Screened patients in Edinburgh were offered the opportunity to participate in the mechanistic study. Interventions and follow-up Those allocated to UPA received three courses of treatment, each course comprising a daily 5-mg oral dose for 12 weeks followed by a four-week break. Those allocated to the LNG-IUS had it fitted in hospital or primary care. Participants allocated to UPA returned to hospital to collect their repeat prescription at 3 and 6 months, and may have been seen by a member of the care team if required. They were then seen in clinic at 12 months for ultrasound scan (USS) and haemoglobin/serum estradiol measurement. Those allocated to the LNG-IUS group attended USS at 12 months. Follow-up at interim time points was conducted by postal questionnaire. Those partaking in the mechanism of action study underwent magnetic resonance imaging (MRI) following randomisation and at the end of treatment cycles two and three. An additional endometrial biopsy was obtained at the end of treatment cycle two. Outcome measures Primary Condition-specific quality of life score as measured by the menorrhagia multi-attribute scale (MMAS) questionnaire at 12 months. Summary scores range from 0 (worst affected) to 100 (not affected). Secondary Condition-specific quality of life score as measured by MMAS at 3 and 6 months Menstrual bleeding (pictorial blood loss assessment chart)* Cycle regularity (ordinal four-point scale)* Duration of period (ordinal three option scale)* Pelvic pain during periods, intercourse and at other times (visual analogue scales; 0 = best outcome, 10 = worse outcome)* Uterine fibroid symptom and quality of life instrument (only given to women diagnosed with fibroids)* Sexual function (sexual activity questionnaire)* Generic quality of life (EQ-5D-5L)* Satisfaction with treatment outcome (five-point Likert scale) Participant rating of effect of treatment on HMB over 12 months (four-point Likert scale) Whether participant is willing to recommend the treatment to a friend (yes/no) Surgical intervention Adherence to trial treatments and reasons for changing treatment, as reported by the participant Serious adverse events and reactions Uterine volume, evidence of adenomyosis, presence of fibroids, largest fibroid volume, endometrial thickness, endometrial appearance, evidence of ovarian cysts at 12 months (USS) Endometrial biopsy at 12 months (UPA group only) Liver function tests, from 20 March 2018 every four weeks (UPA group only) Haemoglobin and serum estradiol at 12 months * assessed at 3, 6 and 12 months Mechanism of action A: Effects on cellular markers of endometrial steroid receptors and metabolising enzymes (governing local endometrial steroid [ligand] availability), cell proliferation, cell survival (apoptosis); detection of genes implicated in control of proliferation in endometrium; B: Effects on uterine/fibroid structure addressed by obtaining volume measurements for the whole uterus, and for the total volume of fibroids when present, by using high resolution structural MRI and stereology; and C: Uterine vascularity using dynamic contrast-enhanced MRI (DCE-MRI). Urgent safety measures In November 2017, the European Medicines Agency (EMA) issued an urgent drug alert for UPA due to a small number of reports of serious liver injury. A detailed investigation by the regulatory authorities was undertaken and it was found that eight reports of serious liver injury were reported in Europe from an estimated 740,000 women using UPA for uterine fibroids. Restrictions on prescribing UPA were subsequently issued and the trial sponsor implemented an urgent safety measure (USM) in February 2018, which halted recruitment. Those allocated UPA were allowed to complete their current course of UPA treatment but not commence any further outstanding courses. In addition, they commenced monthly assessment of LFTs (as well as a post treatment test approximately 2 weeks after the last course of UPA). In August 2018, the halt on UPA prescribing was lifted and recruitment to UCON resumed in October 2018 with additional safety measures in place, including exclusion of those with any history of liver disease [defined as levels of alanine transaminase (ALT) or aspartate aminotransferase (AST) of more than two times the upper limit of normal] and LFT monitoring as described above. UPA was stopped if women had an ALT or AST more than three times the upper limit of normal and a hepatology opinion was sought. In March 2020, the EMA temporarily suspended use of UPA a second time due to ongoing concerns regarding hepatotoxicity and a further USM was issued. All treatment courses of UPA were immediately stopped. In view of the second USM, the investigators, in discussion with the funder, chose premature closure of recruitment to the study but planned follow-up actions continued as per protocol. Statistical considerations The study was powered to detect a clinically useful difference in MMAS score (13 points) between the two groups at twelve months. To detect a difference of this size [0.5 standard deviations (SDs)] with 90% power (p = 0.05) would require 86 women in each group (172 in total). To allow for a 20% loss to follow-up or pregnancy, the sample size was inflated to 220 women. Following the initial USM, this figure was inflated to 302 women to ensure that there were adequate responses in the primary analysis population (defined below) to detect the same size of difference. The original planned primary analysis population comprised all participants, regardless of adherence to treatment, employing suitable regression models to estimate difference between groups. The enforced non-compliance as a result of the withdrawal of UPA had substantial implications for the validity of the data reported by participants. It was therefore necessary to redefine analysis populations, considering the restrictions that prevented women taking their courses of UPA might influence their responses and any other new potential biases that may be apparent in either group due to, for example, knowledge of the safety concerns around UPA. The primary analysis population would now comprise participants with questionnaire responses received prior to the first USM (12 February 2018), along with questionnaire responses from participants recruited following the study restart (18 October 2018) provided that the responses were returned before the second USM (17 March 2020). Results Main trial A total of 4471 women were approached for the study, with 236 consented and randomised, of whom 181 (77%) returned primary outcome data at 12 months (103 within the primary analysis population). Baseline data were comparable between groups; 92% were white, 34% had fibroids and 8% adenomyosis. In the primary analysis population, MMAS scores substantially improved in both arms, but at 12 months there was no evidence of a difference between the UPA [median score category: 76–99, IQR (51–75 to 100), n = 53] and LNG-IUS [median score category: 76–99, IQR (51–75 to 100), n = 50] groups (adjusted OR 0.55, 95% CI 0.26 to 1.17; p = 0.12). Rates of amenorrhoea where much higher in those allocated UPA compared with LNG-IUS at each time point (3 months: 56% vs. 5%, adjusted OR 29.3, 95% CI 7.37 to 116; 6 months 53% vs. 10%, adjusted OR 11.7 95% CI 3.78 to 36.0; 12 months: 64% vs. 25%, adjusted OR 7.12, 95% CI 2.29 to 22.2). There was no evidence of a difference in the other patient-reported outcomes although there was considerable uncertainty. In those with uterine fibroids, there were no changes in fibroid or uterine volume in either treatment group at 12 months. On endometrial biopsy, seven participants (8%) had evidence of progesterone receptor modulator associated endometrial changes (PAEC) at 12 months, although none was observed at a further 6 months post treatment; there were no cases of endometrial malignancy. Rates of serious adverse events were low, and no patients required admission to hospital for management of deranged liver function tests due to UPA use. Mechanism of action study Effects of UPA administration on the uterus: UPA produced a reduction in cell proliferation in the endometrium, as well as alteration of other local endometrial cellular markers (steroid receptor and steroid metabolising enzyme expression) creating a local endometrial oestrogenic environment. The effects on endometrial cellular markers were reversed upon withdrawal of UPA treatment. Stereological analysis in 19 patients showed that UPA did not produce a reduction in the volume of the uterus, irrespective of coexisting fibroids or adenomyosis. DCE-MRI in 15 patients showed that UPA appears not to have an effect on uterine blood flow. If adenomyosis was present in the uterus, there was a significant increase in plasma volume in the endometrium. However, one of the five women with adenomyosis also had fibroids. Effects of UPA administration on uterine fibroids: DCE-MRI studies showed that UPA produced an average reduction in plasma volume in 11 fibroids, which may be interpreted as being due to a reduction in extracellular matrix components. This finding was not supported by stereological analysis, which failed to show a reduction in the total volume of fibroids in eight patients. However, it should be noted that the number of subjects studied is small. Conclusions Both UPA and LNG-IUS alleviated the adverse impact of heavy menstrual bleeding on quality of life but we found no evidence of a difference between groups over 12 months. UPA was evidently superior to LNG-IUS in terms of inducing amenorrhoea. We observed no difference in reduction in the volume of the uterus, whether or not fibroids were present and no difference in change in the volume of fibroids was observed. Analysis of selected markers of endometrial cellular function demonstrated UPA modulation of the progesterone receptor, resulting in molecular and cellular alteration in steroid receptors within the endometrium, consistent with the development of a local (endometrial) oestrogenic microenvironment. Despite this, there is no evidence of pathological endometrial changes. We demonstrated that alteration in the endometrial microenvironment reverses on cessation of UPA treatment, a key factor for a medical treatment of HMB, particularly for those who wish to preserve fertility. UPA now has restricted availability due to concerns regarding hepatotoxicity. Findings from this study may offer insights into mechanism of action of other SPRM class members. New, effective and acceptable oral medical treatment options are needed to address an important unmet clinical need. Recommendations for research Further studies of medical treatments for HMB Developing other SPRMs, not associated with DILI Other hormonal/non-hormonal medical treatments for HMB Patient populations that encompass both the symptoms of HMB and underlying aetiologies, including structurally normal uterus, adenomyosis and small fibroids Study design with outcome measures impact on menstrual bleeding pattern, pelvic pain and impact on haemoglobin and iron-deficiency, as well as quality of life Qualitative studies to determine what are the most important outcomes to women who suffer HMB Study registration This trial is registered as ISRCTN 20426843. Funding This project was funded by the National Institute for Health and Care Research (NIHR) Efficacy and Mechanism Evaluation Programme and will be published in full in Efficacy and Mechanism Evaluation; Vol. 10, No. 8. See the NIHR Journals Library website for further project information.
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- 2023
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47. A stabilized linear finite element method for anisotropic poroelastodynamics with application to cardiac perfusion
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Thekkethil, Namshad, Rossi, Simone, Gao, Hao, Richardson, Scott I. Heath, Griffith, Boyce E., and Luo, Xiaoyu
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- 2023
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48. Loss-of-function of the hippo transducer TAZ reduces mammary tumor growth through a myeloid-derived suppressor cell-dependent mechanism
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Shen, He, Zhang, Yuwen, Kramer, Elliot D., Katsuta, Eriko, Wan, Yin, Chen, Yanmin, Wang, Jianmin, Zhang, Yali, Matsuzaki, Junko, Frangou, Costa, Abrams, Scott I., and Zhang, Jianmin
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- 2022
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49. VSSP abrogates murine ovarian tumor-associated myeloid cell-driven immune suppression and induces M1 polarization in tumor-associated macrophages from ovarian cancer patients
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Khan, ANM Nazmul H., Emmons, Tiffany R., Magner, William J., Alqassim, Emad, Singel, Kelly L., Ricciuti, Jason, Eng, Kevin H., Odunsi, Kunle, Tomasi, Thomas B., Lee, Kelvin, Abrams, Scott I., Mesa, Circe, and Segal, Brahm H.
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- 2022
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50. Ocean Governance
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Scott, I., primary and Spalding, A. K., additional
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- 2023
- Full Text
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