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The Brazilian Amazon region is a highly endemic area for hepatitis Delta and has areas that are difficult to access. Understanding the dynamics of HDV transmission in these remote locations is important for elucidating the routes of infection. To investigate this, a molecular analysis of HDV was conducted to assess the spatio-temporal dynamics of HDV cases. Between 2010 and 2023, 35 patients were recruited from the Viral Hepatitis Outpatient Clinic in Rondônia, Brazil. Conventional PCR was used to amplify the complete HDV genome followed by nucleotide sequencing via the Sanger method. The HDV genotype was determined using maximum likelihood phylogenetic reconstruction. A Skygrid coalescent approach with a Relaxed Random Walk phylogeographic model was used for the spatio-temporal analysis. Most individuals were males (21/35), with a median age of 39 years. HDV-3 was identified in all samples (35/35; 100%). The tMRCA was estimated to be 1824, with a substitution rate of 8.2 × 10−4 substitutions/site/year. The results suggest that HDV likely entered Brazil around 1820, in the state of Amazonas, subsequently spreading to Acre and Rondônia. Notable migration events were observed starting from 2010. This study suggests that HDV-3 has a complex evolutionary history spanning over two centuries, with intricate transmission routes in different locations in Brazil. [ABSTRACT FROM AUTHOR]

The performance of the traffic system can drastically drop when nonrecurrent congestion caused by incidents occurs. Early detection and clearing of traffic incidents will enable the mitigation of the congestion and early restoration of normal traffic conditions. The research in this paper utilized the vehicle information from the recent technological advancement in transportation systems, connected vehicles (CV), and loop-detector information for nonconnected vehicles (NCVs) and developed a novel algorithm to (1) control traffic signals for normal traffic conditions in the absence of incidents, (2) detect traffic incidents using CV/NCV information, and (3) control traffic signals during the occurrence and dissipation of incidents. All the 3 strategies were integrated into one algorithm, which runs as per the real-time traffic conditions, in the presence or absence of incidents. Space-mean speeds of the vehicles on nonincident lanes and throughput maximization criteria were taken as the indicators for the activation of specific signal timings directed at the incident-affected approach. Diverse incident scenarios were tested on a four-legged isolated intersection using the VISSIM simulation tool. Incident detection results showed a higher detection rate and lower mean detection time at higher CV penetration and higher traffic volumes, and at the incident locations nearer to the stop-line. The proposed incident-responsive signal control strategy at 40% and higher CV penetration showed better performance over EPICS adaptive signal control solution, in reducing average travel time delay and the average number of stops per vehicle., Author(s): Kancharla K. K. Chandan (corresponding author) [1]; Álvaro J. M. Seco [2]; Ana M. C. Bastos Silva [2] 1. Introduction and Background Nonrecurrent congestion caused by traffic incidents remains [...]

An efficient strategy to develop porous materials with potential for NO2 sensing was based in the preparation of a metal-organic framework (MOF), UiO-66(Hf), modified with a very small amount of meso-tetrakis(4-carboxyphenyl) N-methylpyrrolidine-fused chlorin (TCPC), TCPC@MOF. Chlorin's incorporation into the UiO-66(Hf) framework was verified by several characterization methods and revealed that the as-synthesized TCPC@MOF brings together the chemical stability of UiO-66(Hf) and the photophysical properties of the pyrrolidine-fused chlorin which is about five times more emissive than the porphyrin counterpart. TCPC@MOF was further incorporated into polydimethylsiloxane (PDMS) and the resulting TCPC@MOF@PDMS film was tested in NO2 gas sensing. It showed notable sensitivity as well as a fast response in the range between 0.5 and 500 ppm where an emission intensity quenching is observed up to 96% for 500 ppm. This is a rare example of a chlorin-derivative used for gas-sensing applications through emission changes, and an unusual case of this type of optical-sensing composites of NO2. [ABSTRACT FROM AUTHOR]

The search for accurate and sensitive methods to detect chemical substances, namely cations and anions, is urgent and widely sought due to the enormous impact that some of these chemical species have on human health and on the environment. Here, we present a new platform for the efficient sensing of Cu2+ and Li+ cations. For this purpose, two novel photoactive diketopyrrolopyrrole-rhodamine conjugates were synthesized through the condensation of a diketopyrrolopyrrole dicarbaldehyde with rhodamine B hydrazide. The resulting chemosensors 1 and 2, bearing one or two rhodamine hydrazide moieties, respectively, were characterized by 1H and 13C NMR and high-resolution mass spectrometry, and their photophysical and ion-responsive behaviours were investigated via absorption and fluorescence measurements. Chemosensors 1 and 2 displayed a rapid colorimetric response upon the addition of Cu2+, with a remarkable increase in the absorbance and fluorescence intensities. The addition of other metal ions caused no significant effects. Moreover, the resulting chemosensor-Cu2+ complexes revealed to be good probes for the sensing of Li+ with reversibility and low detection limits. The recognition ability of the new chemosensors was investigated by absorption and fluorescence titrations and competitive studies. [ABSTRACT FROM AUTHOR]

The evolution of snake venoms resulted in multigene toxin families that code for structurally similar isoforms eventually harboring distinct functions. PLA2s are dominant toxins in viper venoms, and little is known about the impact of their diversity on human envenomings and neutralization by antivenoms. Here, we show the isolation of three distinct PLA2s from B. atrox venom. FA1 is a Lys-49 homologue, and FA3 and FA4 are catalytic Asp-49 PLA2s. FA1 and FA3 are basic myotoxic proteins, while FA4 is an acid non-myotoxic PLA2. FA3 was the most potent toxin, inducing higher levels of edema, inflammatory nociception, indirect hemolysis, and anticoagulant activity on human, rat, and chicken plasmas. FA4 presented lower anticoagulant activity, and FA1 had only a slight effect on human and rat plasmas. PLA2s presented differential reactivities with antivenoms, with an emphasis on FA3, which was not recognized or neutralized by the antivenoms used in this study. Our findings reveal the functional and antigenic diversity among PLA2s from B. atrox venom, highlighting the importance of assessing venom variability for understanding human envenomations and treatment with antivenoms, particularly evident here as the antivenom fails to recognize FA3, the most active multifunctional toxin described. [ABSTRACT FROM AUTHOR]

Through active surveillance and contact tracing from outpatients, we aimed to identify and characterize SARS‐CoV‐2 variants circulating in Porto Velho‐Rondônia, a city in the Brazilian Amazon. As part of a prospective cohort, we gathered information from 2,506 individuals among COVID‐19 patients and household contacts. Epidemiological data, nasopharyngeal swabs, and blood samples were collected from all participants. Nasopharyngeal swabs were tested for antigen rapid diagnostic test and reverse transcription‐polymerase chain reaction (RT‐PCR) followed by genomic sequencing. Blood samples underwent ELISA testing for IgA, IgG, and IgM antibody levels. From 757 specimens sequenced, three were identified as Mu variant, none of the individuals carrying this variant had a travel history in the previous 15 days before diagnosis. One case was asymptomatic and two presented mild symptoms. Two infected individuals from different households caring viruses with additional amino acid substitutions ORF7a P45L and ORF1a T1055A compared to the Mu virus reference sequence. One patient presented IgG levels. Our results highlight that genomic surveillance for SARS‐CoV‐2 variants can assist in detecting the emergency of SARS‐CoV‐2 variants in the community, before its identification in other parts of the country. [ABSTRACT FROM AUTHOR]

Interspecific differences in snake venom compositions can result from distinct regulatory mechanisms acting in each species. However, comparative analyses focusing on identifying regulatory elements and patterns that led to distinct venom composition are still scarce. Among venomous snakes, Bothrops cotiara and Bothrops fonsecai represent ideal models to complement our understanding of the regulatory mechanisms of venom production. These recently diverged species share a similar specialized diet, habitat, and natural history, but each presents a distinct venom phenotype. Here, we integrated data from the venom gland transcriptome and miRNome and the venom proteome of B. fonsecai and B. cotiara to better understand the regulatory mechanisms that may be acting to produce differing venom compositions. We detected not only the presence of similar toxin isoforms in both species but also distinct expression profiles of phospholipases A 2 (PLA2) and some snake venom metalloproteinases (SVMPs) and snake venom serine proteinases (SVSPs) isoforms. We found evidence of modular expression regulation of several toxin isoforms implicated in venom divergence and observed correlated expression of several transcription factors. We did not find strong evidence for miRNAs shaping interspecific divergence of the venom phenotypes, but we identified a subset of toxin isoforms whose final expression may be fine-tuned by specific miRNAs. Sequence analysis on orthologous toxins showed a high rate of substitutions between PLA2s, which indicates that these toxins may be under strong positive selection or represent paralogous toxins in these species. Our results support other recent studies in suggesting that gene regulation is a principal mode of venom evolution across recent timescales, especially among species with conserved ecotypes. [ABSTRACT FROM AUTHOR]

Evaluation of mitochondrial function in aerobic cells is crucial for understanding the conditions that can potentially compromise their physiology. From the fields of Toxicology to Oncology, various approaches involving freshly isolated fractions of mitochondria, permeabilized cells, intact cells, or animal tissues have been employed to investigate metabolism through oxygen consumption.Several techniques are available for measuring oxygen consumption in liquids. These include polarography with oxygen electrodes, which can employ chemical, electrochemical, or optical detection methods, as well as the use of fluorescent or luminescent probes. In this chapter, we will review the concepts previously discussed in earlier editions, focusing on Clark-type electrodes for electrochemical detection. Additionally, we will explore other approaches that involve intact cells and tissue explants with minimal plasmatic membrane alterations. These techniques provide an integrated view of Glycolysis, Krebs Cycle and Oxidative Phosphorylation. Despite being a classical and cost-effective system, this elegant technique continues to amaze us with its versatility and generation of reliable data., (© 2025. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)

This work describes the successful design and synthesis of a new fluorescence resonance energy transfer (FRET)-based sensor, denoted as RD1. This sensor incorporates a robust dual-fluorophore design, which combines a rhodamine and a dansyl derivative, functionalized with a thiosemicarbazide group that acts as Hg(II) specific recognition site. A synthetic pathway was developed that allowed the efficient synthesis of RD1 with a remarkable overall yield of 44% over four steps, through microwave-assisted protocols. The influence of ethyl, benzyl and phenyl substituents of isothiocyanate in the preparation of the thiosemicarbazide moiety was studied, revealing a crucial dependence of the nature of the isothiocyanate in the formation of the recognition site. Owing to its characteristic ratiometric detection, RD1 exhibited remarkable robustness to external parameters such as pH and solvent composition. The sensor demonstrated a hybrid two-stage response to Hg(II), with an initial quenching of fluorescence followed by an enhancement of emission through a FRET mechanism, both stages being corroborated by DFT (density functional theory) calculations. In vitro studies demonstrated that RD1 presents excellent cytocompatibility and capacity to permeate cellular membranes and be effectively internalized by L929 cell line. Importantly, RD1 retained its sensory ability in a complex cellular environment, affirming its efficacy as a fluorescent sensor for the in vitro detection of bioaccumulated mercury species. These results suggest the potential of RD1 for the detection of toxic bioaccumulated mercury species, aiding in environmental and biomedical research., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)