1. An ISG15-Based High-Throughput Screening Assay for Identification and Characterization of SARS-CoV-2 Inhibitors Targeting Papain-like Protease.
- Author
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Samrat SK, Kumar P, Liu Y, Chen K, Lee H, Li Z, Chen Y, and Li H
- Subjects
- Humans, Molecular Docking Simulation, COVID-19 Drug Treatment, Protease Inhibitors pharmacology, Protease Inhibitors chemistry, Coronavirus 3C Proteases antagonists & inhibitors, Coronavirus 3C Proteases metabolism, Coronavirus 3C Proteases chemistry, Fluorescence Resonance Energy Transfer, COVID-19 virology, SARS-CoV-2 drug effects, SARS-CoV-2 enzymology, Antiviral Agents pharmacology, Antiviral Agents chemistry, High-Throughput Screening Assays methods, Coronavirus Papain-Like Proteases antagonists & inhibitors, Coronavirus Papain-Like Proteases chemistry, Coronavirus Papain-Like Proteases metabolism, Cytokines metabolism, Ubiquitins metabolism, Ubiquitins chemistry, Ubiquitins antagonists & inhibitors
- Abstract
Emergence of newer variants of SARS-CoV-2 underscores the need for effective antivirals to complement the vaccination program in managing COVID-19. The multi-functional papain-like protease (PLpro) of SARS-CoV-2 is an essential viral protein that not only regulates the viral replication but also modulates the host immune system, making it a promising therapeutic target. To this end, we developed an in vitro interferon stimulating gene 15 (ISG15)-based Förster resonance energy transfer (FRET) assay and screened the National Cancer Institute (NCI) Diversity Set VI compound library, which comprises 1584 small molecules. Subsequently, we assessed the PLpro enzymatic activity in the presence of screened molecules. We identified three potential PLpro inhibitors, namely, NSC338106, 651084, and 679525, with IC
50 values in the range from 3.3 to 6.0 µM. These molecules demonstrated in vitro inhibition of the enzyme activity and exhibited antiviral activity against SARS-CoV-2, with EC50 values ranging from 0.4 to 4.6 µM. The molecular docking of all three small molecules to PLpro suggested their specificity towards the enzyme's active site. Overall, our study contributes promising prospects for further developing potential antivirals to combat SARS-CoV-2 infection.- Published
- 2024
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