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This article presents a modified protocol for embedding and sectioning spheroids and organoids, which are increasingly used in research due to their ability to emulate living tissue. The modifications aim to reduce the distortion and damage of these fragile structures during the embedding and sectioning process. The new method involves using optimized embedding containers, a modified embedding protocol, and optimized temperatures for cryosectioning. A heat-induced antigen retrieval protocol was tested and found to significantly increase immunostaining intensity without compromising spheroid integrity. The combined approach allowed for the creation of thinner cryosections, leading to clearer and more detailed images. The results suggest that the modified protocol could be widely adopted to enhance the imaging of spheroids and organoids. • Paraformaldehyde fixation of spheroids • Antigen retrieval treatment of spheroids • Embedding in freezing medium and cryosectioning

Temporal molecular changes in ageing mammalian organs are of relevance to disease aetiology because many age-related diseases are linked to changes in the transcriptional and epigenetic machinery that regulate gene expression. We performed quantitative proteome analysis of chromatin-enriched protein extracts to investigate the dynamics of the chromatin proteomes of the mouse brain, heart, lung, kidney, liver, and spleen at 3, 5, 10, and 15 months of age. Each organ exhibited a distinct chromatin proteome and sets of unique proteins. The brain and spleen chromatin proteomes were the most extensive, diverse, and heterogenous among the six organs. The spleen chromatin proteome appeared static during the lifespan, presenting a young phenotype that reflects the permanent alertness state and important role of this organ in physiological defence and immunity. We identified a total of 5928 proteins, including 2472 nuclear or chromatin-associated proteins across the six mouse organs. Up to 3125 proteins were quantified in each organ, demonstrating distinct and organ-specific temporal protein expression timelines and regulation at the post-translational level. Bioinformatics meta-analysis of these chromatin proteomes revealed distinct physiological and ageing-related features for each organ. Our results demonstrate the efficiency of organelle-specific proteomics for in vivo studies of a model organism and consolidate the hypothesis that chromatin-associated proteins are involved in distinct and specific physiological functions in ageing organs.

Non-alcoholic fatty liver disease affects one-fourth of the world’s population. Central to the disease progression is lipid accumulation in the liver, followed by inflammation, fibrosis and cirrhosis. The underlying mechanism behind the early stages of the disease is poorly understood. We have exposed human hepatic HepG2/C3A cells-based spheroids to 65 μM oleic acid and 45 μM palmitic acid and employed proteomics and lipidomics analysis to investigate their effect on hepatocytes. The treatment successfully induced in vivo hallmarks of NAFLD, as evidenced by intracellular lipid accumulation and increased ATP levels. Quantitative lipidome analysis revealed an increase in ceramides, LPC and saturated triglycerides and a decrease in the ratio of PC/PE, similar to the changes observed in patients’ liver biopsies. The proteomics analysis combined with qPCR showed increased epithelial to mesenchymal transition (EMT) signalling. Activation of EMT was further validated by transcriptomics in TGF-β treated spheroids, where an increase in mesenchymal cell markers (N-cadherin and collagen expression) was found. Our study demonstrates that this model system thus closely echoes several of the clinical features of non-alcoholic fatty liver disease and can be used to investigate the underlying molecular changes occurring in the condition.

Two‐dimensional conjugated metal–organic frameworks (2D c‐MOFs) are emerging as promising electrode materials for electrochemical energy storage devices. However, a viable path to realize superior dual‐ion storage in 2D c‐MOFs has remained elusive. Here, we report the synthesis of Cu2(Nx−OHPTP) 2D c‐MOFs (x=0,1,2; OHPTP=octahydroxyphenanthrotriphenylene) with precise aromatic carbon‐nitrogen arrangements, based on the π‐conjugated OHPTP ligand incorporated with one or two nitrogen atoms. The skeletal nitrogen modification in Cu2(Nx−OHPTP) allows the synergistic introduction of additional redox sites, and thus substantially favors the unique dual‐ion adsorption capacity. Consequently, the Cu2(N2−OHPTP) cathode exhibits a largely enhanced electrochemical performance for dual‐ion storage (i.e., Li+ and Cl‐) with a high specific capacity of 53.8 mAh g−1, which is twice that of Cu2(N0−OHPTP) and 1.3 times that of Cu2(N1−OHPTP). Furthermore, the Cu2(N2−OHPTP) electrode displays a favorable rate performance of 52 % and good cycling stability of 96 % after 1000 cycles. We identify N‐centered redox sites as additional Li+ adsorption sites by combining ex situ and in situ spectroscopy measurements and theoretical calculations. In addition, calculations underline the synergistic enhancement of the Cl− adsorption energy by about 1.0 eV at the more electron‐poor CuO4 linkages after N‐incorporation. This work paves the way for the precise design of 2D c‐MOFs with superior electrochemical properties, advancing their application in dual‐ion storage applications. [ABSTRACT FROM AUTHOR]