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111 results on '"Wu, Jingpeng"'

1. Neuronal wiring diagram of an adult brain

Author

Dorkenwald, Sven, Matsliah, Arie, Sterling, Amy R., Schlegel, Philipp, Yu, Szi-chieh, McKellar, Claire E., Lin, Albert, Costa, Marta, Eichler, Katharina, Yin, Yijie, Silversmith, Will, Schneider-Mizell, Casey, Jordan, Chris S., Brittain, Derrick, Halageri, Akhilesh, Kuehner, Kai, Ogedengbe, Oluwaseun, Morey, Ryan, Gager, Jay, Kruk, Krzysztof, Perlman, Eric, Yang, Runzhe, Deutsch, David, Bland, Doug, Sorek, Marissa, Lu, Ran, Macrina, Thomas, Lee, Kisuk, Bae, J. Alexander, Mu, Shang, Nehoran, Barak, Mitchell, Eric, Popovych, Sergiy, Wu, Jingpeng, Jia, Zhen, Castro, Manuel A., Kemnitz, Nico, Ih, Dodam, Bates, Alexander Shakeel, Eckstein, Nils, Funke, Jan, Collman, Forrest, Bock, Davi D., Jefferis, Gregory S. X. E., Seung, H. Sebastian, and Murthy, Mala

Published
2024
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2. TriSAM: Tri-Plane SAM for zero-shot cortical blood vessel segmentation in VEM images

Author

Wan, Jia, Li, Wanhua, Adhinarta, Jason Ken, Banerjee, Atmadeep, Sjostedt, Evelina, Wu, Jingpeng, Lichtman, Jeff, Pfister, Hanspeter, and Wei, Donglai

Subjects
Computer Science - Computer Vision and Pattern Recognition
Abstract

While imaging techniques at macro and mesoscales have garnered substantial attention and resources, microscale Volume Electron Microscopy (vEM) imaging, capable of revealing intricate vascular details, has lacked the necessary benchmarking infrastructure. In this paper, we address a significant gap in this field of neuroimaging by introducing the first-in-class public benchmark, BvEM, designed specifically for cortical blood vessel segmentation in vEM images. Our BvEM benchmark is based on vEM image volumes from three mammals: adult mouse, macaque, and human. We standardized the resolution, addressed imaging variations, and meticulously annotated blood vessels through semi-automatic, manual, and quality control processes, ensuring high-quality 3D segmentation. Furthermore, we developed a zero-shot cortical blood vessel segmentation method named TriSAM, which leverages the powerful segmentation model SAM for 3D segmentation. To extend SAM from 2D to 3D volume segmentation, TriSAM employs a multi-seed tracking framework, leveraging the reliability of certain image planes for tracking while using others to identify potential turning points. This approach effectively achieves long-term 3D blood vessel segmentation without model training or fine-tuning. Experimental results show that TriSAM achieved superior performances on the BvEM benchmark across three species. Our dataset, code, and model are available online at \url{https://jia-wan.github.io/bvem}., Comment: BvEM-Mouse can be visualized at: https://tinyurl.com/yc2s38x9

Published
2024

3. On the non-uniqueness of transport equation: the quantitative relationship between temporal and spatial regularity

Author

Wu, Jingpeng

Subjects
Mathematics - Analysis of PDEs, 35A02, 35D30, 35Q35
Abstract

In this paper, we consider the non-uniqueness of transport equation on the torus $\mathbb{T}^d$, with density $\rho\in L^{s}_tL_x^{p}$ and divergence-free vector field $\boldsymbol{u}\in L^{s'}_tL_x^{p'}\cap L^{\tilde{s}}_tW_x^{1,\tilde{p}}$. We prove that the non-uniqueness holds for $\frac{1}{p}+\frac{\tilde{s}'}{s\tilde{p}}>1+\frac{1}{d-1}$, with $d\ge 2$ and $s,p,\tilde{p}\in[1,\infty)$, $1\le\tilde{s}

Published
2023

4. Non-uniqueness of the transport equation at high spacial integrability

Author

Wu, Jingpeng and Zhang, Xianwen

Subjects
Mathematics - Analysis of PDEs, 35A02, 35D30, 35Q35
Abstract

In this paper, we show the non-uniqueness of the weak solution in the class $\rho\in L^{s}_tL^p_x$ for the transport equation driven by a divergence-free vector field $\boldsymbol{u}\in L^{\tilde{s}}_tW^{1,q}_x\cap L_t^{s'}L_x^{p'}$ happens in the range $1/p+1/q>1-\frac{p-1}{4(p+1)p}$ with some $\tilde{s}>1$, as long as $1\le s<\infty$, $p>1$. As a corollary, $L^{\infty}$ in time of the density $\rho$ is critical in some sense for the uniqueness of weak solution. Our proof is based on the convex integration method developed in [Modena and Sattig, 2020, Ann. Inst. H. Poincar\'e C Anal. Non Lin\'eaire], [Cheskidov and Luo, 2021, Ann. PDE].

Published
2023

5. The gyrokinetic limit for the Plasma-Charge model in $\mathbb{R}^2$

Author

Wu, Jingpeng

Subjects
Mathematics - Analysis of PDEs, 35Q83, 82D10, 35B40, 35A24
Abstract

In this article, we investigate the gyrokinetic limit for the two-dimensional Vlasov-Poisson system with point charges. We show that the solution converges to a measure-valued solution of the Euler equation with a defect measure, which extends the results in [Miot, Nonlinearity, 2019] to the case of multi-point charges and removes the small condition $\sup_{0<\varepsilon<1}\|f_{\varepsilon}^0\|_{L^1}<1$., Comment: 23 pages

Published
2023

6. An Out-of-Domain Synapse Detection Challenge for Microwasp Brain Connectomes

Author

Wu, Jingpeng, Li, Yicong, Gupta, Nishika, Shinomiya, Kazunori, Gunn, Pat, Polilov, Alexey, Pfister, Hanspeter, Chklovskii, Dmitri, and Wei, Donglai

Subjects
Computer Science - Computer Vision and Pattern Recognition, Quantitative Biology - Neurons and Cognition
Abstract

The size of image stacks in connectomics studies now reaches the terabyte and often petabyte scales with a great diversity of appearance across brain regions and samples. However, manual annotation of neural structures, e.g., synapses, is time-consuming, which leads to limited training data often smaller than 0.001\% of the test data in size. Domain adaptation and generalization approaches were proposed to address similar issues for natural images, which were less evaluated on connectomics data due to a lack of out-of-domain benchmarks.

Published
2023

8. Cyclic structure with cellular precision in a vertebrate sensorimotor neural circuit

Author

Yang, Runzhe, Vishwanathan, Ashwin, Wu, Jingpeng, Kemnitz, Nico, Ih, Dodam, Turner, Nicholas, Lee, Kisuk, Tartavull, Ignacio, Silversmith, William M, Jordan, Chris S, David, Celia, Bland, Doug, Sterling, Amy, Goldman, Mark S, Aksay, Emre RF, Seung, H Sebastian, and Eyewirers, the

Subjects
Neurosciences, Eye Disease and Disorders of Vision, Neurological, Animals, Zebrafish, Caenorhabditis elegans, Interneurons, Motor Neurons, Eye Movements, Mammals, Eyewirers, EM connectome, connectivity motifs, oculomotor system, Biological Sciences, Medical and Health Sciences, Psychology and Cognitive Sciences, Developmental Biology
Abstract

Neuronal wiring diagrams reconstructed by electron microscopy1,2,3,4,5 pose new questions about the organization of nervous systems following the time-honored tradition of cross-species comparisons.6,7 The C. elegans connectome has been conceptualized as a sensorimotor circuit that is approximately feedforward,8,9,10,11 starting from sensory neurons proceeding to interneurons and ending with motor neurons. Overrepresentation of a 3-cell motif often known as the "feedforward loop" has provided further evidence for feedforwardness.10,12 Here, we contrast with another sensorimotor wiring diagram that was recently reconstructed from a larval zebrafish brainstem.13 We show that the 3-cycle, another 3-cell motif, is highly overrepresented in the oculomotor module of this wiring diagram. This is a first for any neuronal wiring diagram reconstructed by electron microscopy, whether invertebrate12,14 or mammalian.15,16,17 The 3-cycle of cells is "aligned" with a 3-cycle of neuronal groups in a stochastic block model (SBM)18 of the oculomotor module. However, the cellular cycles exhibit more specificity than can be explained by the group cycles-recurrence to the same neuron is surprisingly common. Cyclic structure could be relevant for theories of oculomotor function that depend on recurrent connectivity. The cyclic structure coexists with the classic vestibulo-ocular reflex arc for horizontal eye movements,19 and could be relevant for recurrent network models of temporal integration by the oculomotor system.20,21.

Published
2023

9. Bridging the Gap: Point Clouds for Merging Neurons in Connectomics

Author

Berman, Jules, Chklovskii, Dmitri B., and Wu, Jingpeng

Subjects
Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning
Abstract

In the field of Connectomics, a primary problem is that of 3D neuron segmentation. Although deep learning-based methods have achieved remarkable accuracy, errors still exist, especially in regions with image defects. One common type of defect is that of consecutive missing image sections. Here, data is lost along some axis, and the resulting neuron segmentations are split across the gap. To address this problem, we propose a novel method based on point cloud representations of neurons. We formulate the problem as a classification problem and train CurveNet, a state-of-the-art point cloud classification model, to identify which neurons should be merged. We show that our method not only performs strongly but also scales reasonably to gaps well beyond what other methods have attempted to address. Additionally, our point cloud representations are highly efficient in terms of data, maintaining high performance with an amount of data that would be unfeasible for other methods. We believe that this is an indicator of the viability of using point cloud representations for other proofreading tasks., Comment: 10 pages, 6 figures, MIDL 2022

Published
2021

13. Research on User Identity Authentication Based on Online Behavior Similarity

Author

Li, Yong, Zhang, Zhongying, Wu, Jingpeng, Zhang, Qiang, Filipe, Joaquim, Editorial Board Member, Ghosh, Ashish, Editorial Board Member, Prates, Raquel Oliveira, Editorial Board Member, Zhou, Lizhu, Editorial Board Member, Liao, Xiangke, editor, Zhao, Wei, editor, Chen, Enhong, editor, Xiao, Nong, editor, Wang, Li, editor, Gao, Yang, editor, Shi, Yinghuan, editor, Wang, Changdong, editor, and Huang, Dan, editor

Published
2022
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15. Outcomes of CT-Guided Deeper Localization Technique for Superficial Pulmonary Nodules.

Author

Wu, Jingpeng, Tian, Ye, An, Jianli, Zou, Zibo, Dong, Yanchao, Chen, Zhuo, and Niu, Hongtao

Abstract

Background The possibility of coil dislocation in computed tomography (CT)-guided microcoil localization of superficial pulmonary nodules is relatively high. The aim of the study is to investigate the outcomes of deeper localization technique during CT-guided microcoil localization of superficial pulmonary nodules before video-assisted thoracoscopic surgery (VATS). Methods Fifty-seven identified superficial pulmonary nodules (nodule–pleural distance ≤ 1 cm on CT image) from 51 consecutive patients underwent CT-guided microcoil localization, and subsequent VATSs were included. The rate of technical success, complications, and excised lung volume were compared between deeper localization technique group and conventional localization technique group. Results The technical success rate of the localization procedure was 100% (25/25) in the deeper localization group and 81.3% (26/32) in the conventional localization group (p = 0.030). Excluding one case of lobectomy, the excised lung volume in the deeper localization group and the conventional localization group was 39.3 ± 23.5 and 37.2 ± 16.2 cm3 , respectively (p = 0.684). The incidence of pneumothorax was similar between the deeper localization group and the conventional localization group (24.0 vs. 21.9%, respectively, p = 0.850). The incidence of intrapulmonary hemorrhage in the deeper localization group was higher (16.0%) than that in the conventional localization group (6.3%), but the difference was not statistically significant (p = 0.388). Conclusion CT-guided microcoil localization of superficial pulmonary nodules prior to VATS using a deeper localization technique is feasible. Deeper localization technique reduced the occurrence of dislocation but did not increase excised lung volume. [ABSTRACT FROM AUTHOR]

Published
2024
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16. FlyWire: online community for whole-brain connectomics

Author

Dorkenwald, Sven, McKellar, Claire E., Macrina, Thomas, Kemnitz, Nico, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Popovych, Sergiy, Mitchell, Eric, Nehoran, Barak, Jia, Zhen, Bae, J. Alexander, Mu, Shang, Ih, Dodam, Castro, Manuel, Ogedengbe, Oluwaseun, Halageri, Akhilesh, Kuehner, Kai, Sterling, Amy R., Ashwood, Zoe, Zung, Jonathan, Brittain, Derrick, Collman, Forrest, Schneider-Mizell, Casey, Jordan, Chris, Silversmith, William, Baker, Christa, Deutsch, David, Encarnacion-Rivera, Lucas, Kumar, Sandeep, Burke, Austin, Bland, Doug, Gager, Jay, Hebditch, James, Koolman, Selden, Moore, Merlin, Morejohn, Sarah, Silverman, Ben, Willie, Kyle, Willie, Ryan, Yu, Szi-chieh, Murthy, Mala, and Seung, H. Sebastian

Published
2022
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19. WASPSYN: A Challenge for Domain Adaptive Synapse Detection in Microwasp Brain Connectomes

Author

Li, Yicong, primary, Li, Wanhua, additional, Chen, Qi, additional, Huang, Wei, additional, Zou, Yuda, additional, Xiao, Xin, additional, Shinomiya, Kazunori, additional, Gunn, Pat, additional, Gupta, Nishika, additional, Polilov, Alexey, additional, Xu, Yongchao, additional, Zhang, Yueyi, additional, Xiong, Zhiwei, additional, Pfister, Hanspeter, additional, Wei, Donglai, additional, and Wu, Jingpeng, additional

Published
2024
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25. CAVE: Connectome Annotation Versioning Engine

Author

Dorkenwald, Sven, primary, Schneider-Mizell, Casey M., additional, Brittain, Derrick, additional, Halageri, Akhilesh, additional, Jordan, Chris, additional, Kemnitz, Nico, additional, Castro, Manual A., additional, Silversmith, William, additional, Maitin-Shephard, Jeremy, additional, Troidl, Jakob, additional, Pfister, Hanspeter, additional, Gillet, Valentin, additional, Xenes, Daniel, additional, Bae, J. Alexander, additional, Bodor, Agnes L., additional, Buchanan, JoAnn, additional, Bumbarger, Daniel J., additional, Elabbady, Leila, additional, Jia, Zhen, additional, Kapner, Daniel, additional, Kinn, Sam, additional, Lee, Kisuk, additional, Li, Kai, additional, Lu, Ran, additional, Macrina, Thomas, additional, Mahalingam, Gayathri, additional, Mitchell, Eric, additional, Mondal, Shanka Subhra, additional, Mu, Shang, additional, Nehoran, Barak, additional, Popovych, Sergiy, additional, Takeno, Marc, additional, Torres, Russel, additional, Turner, Nicholas L., additional, Wong, William, additional, Wu, Jingpeng, additional, Yin, Wenjing, additional, Yu, Szi-chieh, additional, Reid, R. Clay, additional, da Costa, Nuno Maçarico, additional, Seung, H. Sebastian, additional, and Collman, Forrest, additional

Published
2023
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26. NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions

Author

Celii, Brendan, primary, Papadopoulos, Stelios, additional, Ding, Zhuokun, additional, Fahey, Paul G., additional, Wang, Eric, additional, Papadopoulos, Christos, additional, Kunin, Alexander, additional, Patel, Saumil, additional, Bae, J. Alexander, additional, Bodor, Agnes L., additional, Brittain, Derrick, additional, Buchanan, JoAnn, additional, Bumbarger, Daniel J., additional, Castro, Manuel A., additional, Cobos, Erick, additional, Dorkenwald, Sven, additional, Elabbady, Leila, additional, Halageri, Akhilesh, additional, Jia, Zhen, additional, Jordan, Chris, additional, Kapner, Dan, additional, Kemnitz, Nico, additional, Kinn, Sam, additional, Lee, Kisuk, additional, Li, Kai, additional, Lu, Ran, additional, Macrina, Thomas, additional, Mahalingam, Gayathri, additional, Mitchell, Eric, additional, Mondal, Shanka Subhra, additional, Mu, Shang, additional, Nehoran, Barak, additional, Popovych, Sergiy, additional, Schneider-Mizell, Casey M., additional, Silversmith, William, additional, Takeno, Marc, additional, Torres, Russel, additional, Turner, Nicholas L., additional, Wong, William, additional, Wu, Jingpeng, additional, Yu, Szi-chieh, additional, Yin, Wenjing, additional, Xenes, Daniel, additional, Kitchell, Lindsey M., additional, Rivlin, Patricia K., additional, Rose, Victoria A., additional, Bishop, Caitlyn A., additional, Wester, Brock, additional, Froudarakis, Emmanouil, additional, Walker, Edgar Y., additional, Sinz, Fabian H., additional, Seung, H. Sebastian, additional, Collman, Forrest, additional, da Costa, Nuno Maçarico, additional, Reid, R. Clay, additional, Pitkow, Xaq, additional, Tolias, Andreas S., additional, and Reimer, Jacob, additional

Published
2023
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27. Functional connectomics reveals general wiring rule in mouse visual cortex

Author

Ding, Zhuokun, primary, Fahey, Paul G., additional, Papadopoulos, Stelios, additional, Wang, Eric, additional, Celii, Brendan, additional, Papadopoulos, Christos, additional, Kunin, Alexander B., additional, Chang, Andersen, additional, Fu, Jiakun, additional, Ding, Zhiwei, additional, Patel, Saumil, additional, Ponder, Kayla, additional, Bae, J. Alexander, additional, Bodor, Agnes L., additional, Brittain, Derrick, additional, Buchanan, JoAnn, additional, Bumbarger, Daniel J., additional, Castro, Manuel A., additional, Cobos, Erick, additional, Dorkenwald, Sven, additional, Elabbady, Leila, additional, Halageri, Akhilesh, additional, Jia, Zhen, additional, Jordan, Chris, additional, Kapner, Dan, additional, Kemnitz, Nico, additional, Kinn, Sam, additional, Lee, Kisuk, additional, Li, Kai, additional, Lu, Ran, additional, Macrina, Thomas, additional, Mahalingam, Gayathri, additional, Mitchell, Eric, additional, Mondal, Shanka Subhra, additional, Mu, Shang, additional, Nehoran, Barak, additional, Popovych, Sergiy, additional, Schneider-Mizell, Casey M., additional, Silversmith, William, additional, Takeno, Marc, additional, Torres, Russel, additional, Turner, Nicholas L., additional, Wong, William, additional, Wu, Jingpeng, additional, Yin, Wenjing, additional, Yu, Szi-chieh, additional, Froudarakis, Emmanouil, additional, Sinz, Fabian, additional, Seung, H. Sebastian, additional, Collman, Forrest, additional, da Costa, Nuno Maçarico, additional, Reid, R. Clay, additional, Walker, Edgar Y., additional, Pitkow, Xaq, additional, Reimer, Jacob, additional, and Tolias, Andreas S., additional

Published
2023
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28. Computed Tomography–Guided Microcoil Localization of Pulmonary Nodules: Effects of Multiple Punctures.

Author

Tian, Ye, An, Jianli, Zou, Zibo, Dong, Yanchao, Wu, Jingpeng, Chen, Zhuo, and Niu, Hongtao

Subjects
PULMONARY nodules, VIDEO-assisted thoracic surgery, LOGISTIC regression analysis, COMPUTED tomography, ARTERIAL puncture, PATIENT positioning
Abstract

Background The aim of the study is to analyze the effect of multiple punctures in computed tomography (CT)-guided microcoil localization of pulmonary nodules with other risk factors for common complications. Methods Consecutive patients who underwent CT-guided microcoil localization and subsequent video-assisted thoracoscopic surgery (VATS) between January 2020 and February 2021 were enrolled. Nodules successfully located after only one puncture were defined as the single puncture group, and nodules requiring two or more punctures were defined as the multiple puncture group. Binary logistic regression analysis was performed to assess the relationship between the number of punctures and pneumothorax and intrapulmonary hemorrhage. Results A total of 121 patients were included. There were 98 (68.1%) pulmonary nodules in the single puncture group compared with 46 (31.9%) nodules in the multiple puncture group. The frequencies of pneumothorax and intrapulmonary hemorrhage were higher in the multiple puncture group than in the single puncture group (p = 0.019 and <0.001, respectively). Binary logistic regression demonstrated that independent risk factors for developing pneumothorax included lateral positioning of the patient (p <.001) and prone positioning (p = 0.014), as well as multiple punctures (p = 0.013). Independent risk factors for intrapulmonary hemorrhage included the distance between the distal end of the coil and the surface of the pleura (p = 0.033), multiple punctures (p = 0.003), and passage through the pulmonary vasculature (p < 0.001). Conclusion Multiple punctures resulted in an increased incidence of pneumothorax and intrapulmonary hemorrhage compared with single puncture during CT-guided microcoil localization of pulmonary nodules and were independently associated with both pneumothorax and intrapulmonary hemorrhage. [ABSTRACT FROM AUTHOR]

Published
2023
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29. Energy Conservation of the DiPerna–Lions Solutions to Vlasov–Maxwell Systems.

Author

Wu, Jingpeng and Zhang, Xianwen

Abstract

In this paper, we provide sufficient conditions for the energy conservation of the DiPerna–Lions solutions given in DiPerna and Lions (Commun Pure Appl Math 42:729–757, 1989), Rein (Commun Math Sci 2:145–158, 2004) to Vlasov–Maxwell systems in R 3 , which requires only macroscopic density ρ ∈ L t 2 L loc 2 for the relativistic case and | ξ | f ∈ L t , x 2 L ξ 1 for the non-relativistic case, improving the results in Sospedra–Alfonso (Commun Math Sci 8:901–908, 2010), Bardos et al. (Q Appl Math 78:193–217, 2020). Next, by mollification in time twice with different parameters and the weak formulations containing t = 0 , we obtain the same results for solutions given in Guo (Commun Math Phys 154:245–263, 1993) with low temporal regularity to the Vlasov–Maxwell systems in bounded domains under some boundary-layer conditions. [ABSTRACT FROM AUTHOR]

Published
2023
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31. Large-scale unsupervised discovery of excitatory morphological cell types in mouse visual cortex

Author

Weis, Marissa A., primary, Papadopoulos, Stelios, additional, Hansel, Laura, additional, Lüddecke, Timo, additional, Celii, Brendan, additional, Fahey, Paul G., additional, Bae, J. Alexander, additional, Bodor, Agnes L., additional, Brittain, Derrick, additional, Buchanan, JoAnn, additional, Bumbarger, Daniel J., additional, Castro, Manuel A., additional, Cobos, Erick, additional, Collman, Forrest, additional, da Costa, Nuno Maçarico, additional, Dorkenwald, Sven, additional, Elabbady, Leila, additional, Froudarakis, Emmanouil, additional, Halageri, Akhilesh, additional, Jia, Zhen, additional, Jordan, Chris, additional, Kapner, Dan, additional, Kemnitz, Nico, additional, Kinn, Sam, additional, Lee, Kisuk, additional, Li, Kai, additional, Lu, Ran, additional, Macrina, Thomas, additional, Mahalingam, Gayathri, additional, Mitchell, Eric, additional, Mondal, Shanka Subhra, additional, Mu, Shang, additional, Nehoran, Barak, additional, Patel, Saumil, additional, Pitkow, Xaq, additional, Popovych, Sergiy, additional, Reid, R. Clay, additional, Schneider-Mizell, Casey M., additional, Seung, H. Sebastian, additional, Silversmith, William, additional, Sinz, Fabian H., additional, Takeno, Marc, additional, Torres, Russel, additional, Turner, Nicholas L., additional, Wong, William, additional, Wu, Jingpeng, additional, Yin, Wenjing, additional, Yu, Szi-chieh, additional, Reimer, Jacob, additional, Tolias, Andreas S., additional, and Ecker, Alexander S., additional

Published
2022
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34. Oligodendrocyte precursor cells ingest axons in the mouse neocortex

Author

Buchanan, JoAnn, primary, Elabbady, Leila, additional, Collman, Forrest, additional, Jorstad, Nikolas L., additional, Bakken, Trygve E., additional, Ott, Carolyn, additional, Glatzer, Jenna, additional, Bleckert, Adam A., additional, Bodor, Agnes L., additional, Brittain, Derrick, additional, Bumbarger, Daniel J., additional, Mahalingam, Gayathri, additional, Seshamani, Sharmishtaa, additional, Schneider-Mizell, Casey, additional, Takeno, Marc M., additional, Torres, Russel, additional, Yin, Wenjing, additional, Hodge, Rebecca D., additional, Castro, Manuel, additional, Dorkenwald, Sven, additional, Ih, Dodam, additional, Jordan, Chris S., additional, Kemnitz, Nico, additional, Lee, Kisuk, additional, Lu, Ran, additional, Macrina, Thomas, additional, Mu, Shang, additional, Popovych, Sergiy, additional, Silversmith, William M., additional, Tartavull, Ignacio, additional, Turner, Nicholas L., additional, Wilson, Alyssa M., additional, Wong, William, additional, Wu, Jingpeng, additional, Zlateski, Aleksandar, additional, Zung, Jonathan, additional, Lippincott-Schwartz, Jennifer, additional, Lein, Ed S., additional, Seung, H. Sebastian, additional, Bergles, Dwight E., additional, Reid, R. Clay, additional, and da Costa, Nuno Maçarico, additional

Published
2022
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36. Binary and analog variation of synapses between cortical pyramidal neurons

Author

Dorkenwald, Sven, primary, Turner, Nicholas L, primary, Macrina, Thomas, primary, Lee, Kisuk, primary, Lu, Ran, primary, Wu, Jingpeng, primary, Bodor, Agnes L, primary, Bleckert, Adam A, primary, Brittain, Derrick, primary, Kemnitz, Nico, additional, Silversmith, William M, additional, Ih, Dodam, additional, Zung, Jonathan, additional, Zlateski, Aleksandar, additional, Tartavull, Ignacio, additional, Yu, Szi-Chieh, additional, Popovych, Sergiy, additional, Wong, William, additional, Castro, Manuel, additional, Jordan, Chris S, additional, Wilson, Alyssa M, additional, Froudarakis, Emmanouil, additional, Buchanan, JoAnn, additional, Takeno, Marc M, additional, Torres, Russel, additional, Mahalingam, Gayathri, additional, Collman, Forrest, additional, Schneider-Mizell, Casey M, additional, Bumbarger, Daniel J, additional, Li, Yang, additional, Becker, Lynne, additional, Suckow, Shelby, additional, Reimer, Jacob, additional, Tolias, Andreas S, additional, Macarico da Costa, Nuno, additional, Reid, R Clay, additional, and Seung, H Sebastian, additional

Published
2022
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37. Author response: Binary and analog variation of synapses between cortical pyramidal neurons

Author

Dorkenwald, Sven, primary, Turner, Nicholas L, primary, Macrina, Thomas, primary, Lee, Kisuk, primary, Lu, Ran, primary, Wu, Jingpeng, primary, Bodor, Agnes L, primary, Bleckert, Adam A, primary, Brittain, Derrick, primary, Kemnitz, Nico, additional, Silversmith, William M, additional, Ih, Dodam, additional, Zung, Jonathan, additional, Zlateski, Aleksandar, additional, Tartavull, Ignacio, additional, Yu, Szi-Chieh, additional, Popovych, Sergiy, additional, Wong, William, additional, Castro, Manuel, additional, Jordan, Chris S, additional, Wilson, Alyssa M, additional, Froudarakis, Emmanouil, additional, Buchanan, JoAnn, additional, Takeno, Marc M, additional, Torres, Russel, additional, Mahalingam, Gayathri, additional, Collman, Forrest, additional, Schneider-Mizell, Casey M, additional, Bumbarger, Daniel J, additional, Li, Yang, additional, Becker, Lynne, additional, Suckow, Shelby, additional, Reimer, Jacob, additional, Tolias, Andreas S, additional, Macarico da Costa, Nuno, additional, Reid, R Clay, additional, and Seung, H Sebastian, additional

Published
2022
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39. Quantitative Census of Local Somatic Features in Mouse Visual Cortex

Author

Elabbady, Leila, primary, Seshamani, Sharmishtaa, additional, Mu, Shang, additional, Mahalingam, Gayathri, additional, Schneider-Mizell, Casey, additional, Bodor, Agnes, additional, Bae, J. Alexander, additional, Brittain, Derrick, additional, Buchanan, JoAnn, additional, Bumbarger, Daniel J., additional, Castro, Manuel A., additional, Cobos, Erick, additional, Dorkenwald, Sven, additional, Fahey, Paul G., additional, Froudarakis, Emmanouil, additional, Halageri, Akhilesh, additional, Jia, Zhen, additional, Jordan, Chris, additional, Kapner, Dan, additional, Kemnitz, Nico, additional, Kinn, Sam, additional, Lee, Kisuk, additional, Li, Kai, additional, Lu, Ran, additional, Macrina, Thomas, additional, Mitchell, Eric, additional, Mondal, Shanka Subhra, additional, Nehoran, Barak, additional, Papadopoulos, Stelios, additional, Patel, Saumil, additional, Pitkow, Xaq, additional, Popovych, Sergiy, additional, Reimer, Jacob, additional, Silversmith, William, additional, Sinz, Fabian H., additional, Takeno, Marc, additional, Torres, Russel, additional, Turner, Nicholas, additional, Wong, William, additional, Wu, Jingpeng, additional, Yin, Wenjing, additional, Yu, Szi-chieh, additional, Tolias, Andreas, additional, Seung, H. Sebastian, additional, Reid, R. Clay, additional, Maçarico Da Costa, Nuno, additional, and Collman, Forrest, additional

Published
2022
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43. Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity

Author

Turner, Nicholas L., primary, Macrina, Thomas, additional, Bae, J. Alexander, additional, Yang, Runzhe, additional, Wilson, Alyssa M., additional, Schneider-Mizell, Casey, additional, Lee, Kisuk, additional, Lu, Ran, additional, Wu, Jingpeng, additional, Bodor, Agnes L., additional, Bleckert, Adam A., additional, Brittain, Derrick, additional, Froudarakis, Emmanouil, additional, Dorkenwald, Sven, additional, Collman, Forrest, additional, Kemnitz, Nico, additional, Ih, Dodam, additional, Silversmith, William M., additional, Zung, Jonathan, additional, Zlateski, Aleksandar, additional, Tartavull, Ignacio, additional, Yu, Szi-chieh, additional, Popovych, Sergiy, additional, Mu, Shang, additional, Wong, William, additional, Jordan, Chris S., additional, Castro, Manuel, additional, Buchanan, JoAnn, additional, Bumbarger, Daniel J., additional, Takeno, Marc, additional, Torres, Russel, additional, Mahalingam, Gayathri, additional, Elabbady, Leila, additional, Li, Yang, additional, Cobos, Erick, additional, Zhou, Pengcheng, additional, Suckow, Shelby, additional, Becker, Lynne, additional, Paninski, Liam, additional, Polleux, Franck, additional, Reimer, Jacob, additional, Tolias, Andreas S., additional, Reid, R. Clay, additional, da Costa, Nuno Maçarico, additional, and Seung, H. Sebastian, additional

Published
2022
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44. Accurate Tumor Segmentation and Treatment Outcome Prediction With DeepTOP

Author

Li, Lanlan, primary, Xu, Bin, additional, Zhuang, Zhuokai, additional, Li, Juan, additional, Hu, Yihuang, additional, Wu, Jingpeng, additional, Yang, Hui, additional, Wang, Xiaolin, additional, Lin, Jinxin, additional, Zhou, Ruwen, additional, Chen, Weiwei, additional, Ran, Dongzhi, additional, Huang, Meijin, additional, Wang, Dabiao, additional, Luo, Yanxin, additional, and Yu, Huichuan, additional

Published
2022
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47. FlyWire: online community for whole-brain connectomics

Author

Dorkenwald, Sven, primary, McKellar, Claire E., additional, Macrina, Thomas, additional, Kemnitz, Nico, additional, Lee, Kisuk, additional, Lu, Ran, additional, Wu, Jingpeng, additional, Popovych, Sergiy, additional, Mitchell, Eric, additional, Nehoran, Barak, additional, Jia, Zhen, additional, Bae, J. Alexander, additional, Mu, Shang, additional, Ih, Dodam, additional, Castro, Manuel, additional, Ogedengbe, Oluwaseun, additional, Halageri, Akhilesh, additional, Kuehner, Kai, additional, Sterling, Amy R., additional, Ashwood, Zoe, additional, Zung, Jonathan, additional, Brittain, Derrick, additional, Collman, Forrest, additional, Schneider-Mizell, Casey, additional, Jordan, Chris, additional, Silversmith, William, additional, Baker, Christa, additional, Deutsch, David, additional, Encarnacion-Rivera, Lucas, additional, Kumar, Sandeep, additional, Burke, Austin, additional, Bland, Doug, additional, Gager, Jay, additional, Hebditch, James, additional, Koolman, Selden, additional, Moore, Merlin, additional, Morejohn, Sarah, additional, Silverman, Ben, additional, Willie, Kyle, additional, Willie, Ryan, additional, Yu, Szi-chieh, additional, Murthy, Mala, additional, and Seung, H. Sebastian, additional

Published
2021
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48. Structure and function of axo-axonic inhibition

Author

Schneider-Mizell, Casey M, primary, Bodor, Agnes L, additional, Collman, Forrest, additional, Brittain, Derrick, additional, Bleckert, Adam, additional, Dorkenwald, Sven, additional, Turner, Nicholas L, additional, Macrina, Thomas, additional, Lee, Kisuk, additional, Lu, Ran, additional, Wu, Jingpeng, additional, Zhuang, Jun, additional, Nandi, Anirban, additional, Hu, Brian, additional, Buchanan, JoAnn, additional, Takeno, Marc M, additional, Torres, Russel, additional, Mahalingam, Gayathri, additional, Bumbarger, Daniel J, additional, Li, Yang, additional, Chartrand, Thomas, additional, Kemnitz, Nico, additional, Silversmith, William M, additional, Ih, Dodam, additional, Zung, Jonathan, additional, Zlateski, Aleksandar, additional, Tartavull, Ignacio, additional, Popovych, Sergiy, additional, Wong, William, additional, Castro, Manuel, additional, Jordan, Chris S, additional, Froudarakis, Emmanouil, additional, Becker, Lynne, additional, Suckow, Shelby, additional, Reimer, Jacob, additional, Tolias, Andreas S, additional, Anastassiou, Costas A, additional, Seung, H Sebastian, additional, Reid, R Clay, additional, and Costa, Nuno Maçarico da, additional

Published
2021
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49. Author response: Structure and function of axo-axonic inhibition

Author

Schneider-Mizell, Casey M, primary, Bodor, Agnes L, additional, Collman, Forrest, additional, Brittain, Derrick, additional, Bleckert, Adam, additional, Dorkenwald, Sven, additional, Turner, Nicholas L, additional, Macrina, Thomas, additional, Lee, Kisuk, additional, Lu, Ran, additional, Wu, Jingpeng, additional, Zhuang, Jun, additional, Nandi, Anirban, additional, Hu, Brian, additional, Buchanan, JoAnn, additional, Takeno, Marc M, additional, Torres, Russel, additional, Mahalingam, Gayathri, additional, Bumbarger, Daniel J, additional, Li, Yang, additional, Chartrand, Thomas, additional, Kemnitz, Nico, additional, Silversmith, William M, additional, Ih, Dodam, additional, Zung, Jonathan, additional, Zlateski, Aleksandar, additional, Tartavull, Ignacio, additional, Popovych, Sergiy, additional, Wong, William, additional, Castro, Manuel, additional, Jordan, Chris S, additional, Froudarakis, Emmanouil, additional, Becker, Lynne, additional, Suckow, Shelby, additional, Reimer, Jacob, additional, Tolias, Andreas S, additional, Anastassiou, Costas A, additional, Seung, H Sebastian, additional, Reid, R Clay, additional, and Costa, Nuno Maçarico da, additional

Published
2021
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50. 3D reconstruction of cell nuclei in a full Drosophila brain

Author

Mu, Shang, primary, Yu, Szi-chieh, additional, Turner, Nicholas L., additional, McKellar, Claire E., additional, Dorkenwald, Sven, additional, Collman, Forrest, additional, Koolman, Selden, additional, Moore, Merlin, additional, Morejohn, Sarah, additional, Silverman, Ben, additional, Willie, Kyle, additional, Willie, Ryan, additional, Bland, Doug, additional, Burke, Austin, additional, Ashwood, Zoe, additional, Luther, Kyle, additional, Castro, Manuel, additional, Ogedengbe, Oluwaseun, additional, Silversmith, William, additional, Wu, Jingpeng, additional, Halageri, Akhilesh, additional, Macrina, Thomas, additional, Kemnitz, Nico, additional, Murthy, Mala, additional, and Seung, H. Sebastian, additional

Published
2021
Full Text
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