13 results on '"Zorrilla, J."'
Search Results
2. Analysis of intra-fractional positioning correction performed by cone beam computed tomography in SBRT treatments.
- Author
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García-Acilu, P, García Ruiz-Zorrilla, J., Hernando, O., Prado, A., Chen-Zhao, X., Montero, A., Martí, J., Zucca, D., Alonso, L., De la Casa, M.A., Sánchez, E., Alonso, R., Rubio, C., and Fernández-Letón, P.
- Abstract
• Intra-fraction shifts during DIBH SBRTs are not negligible in the longitudinal axis. • Clarity system improves the prostate control in SBRT in the superior-inferior axis. • Both spirometer based and surface guided DIBH methods detected shifts < 1.1 mm. • Spirometer based DIBH system provides results slightly better than surface guided ones. This study aims to evaluate the positioning correction extracted from Intra-fraction Cone Beam (IF-CBCT) images obtained during Stereotactic Body Radiotherapy (SBRT) treatments, and to assess whether its magnitude justifies its acquisition. In addition, the results obtained in lung, liver, and pancreas SBRTs with two deep inspiration breath-hold systems (DIBH), and for prostate with/without ultrasound (US) monitoring were compared. 1449 treatments, performed with two linear accelerators (LINACs) were retrospectively analyzed. DIBH were performed either with a spirometry-based device or a surface-guidance system and one LINAC was equipped with US monitoring system for prostate. Significance tests were used to account for differences between units. G roup systematic error (M) was approximately –0.7 mm for DIBH treatments in superior-inferior (SI) direction with no difference (p > 0.7) between LINACs. Moreover, there was a SI difference of 0.5 mm for prostate treatments (p = 0.008), in favor of the US monitored one. In anterior-posterior (AP) direction, only liver treatments exhibited differences between LINACs, with the spirometer-based system being 0.8 mm inferior (p = 0.003). M<0.4 mm in left–right (LR) direction was found for all locations and LINACs. The spirometer-based system resulted in lower standard deviation of systematic and random errors in most components and locations, with a greater effect observed in liver SBRTs. The corrections made with IF-CBCT during SBRT treatments were not negligible. Both DIBH systems were effective in managing respiratory movements. However, the spirometry-based system was slightly more accurate. In addition, US monitoring of the prostate appeared to be useful in reducing target shift. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Cost-Effective Strategy of Enhancing Machine Learning Potentials by Transfer Learning from a Multicomponent Data Set on ænet-PyTorch.
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El Aisnada AN, Boonpalit K, van der Kruit R, Draijer KM, López-Zorrilla J, Miyauchi M, Yamaguchi A, and Artrith N
- Abstract
Machine learning potentials (MLPs) offer efficient and accurate material simulations, but constructing the reference ab initio database remains a significant challenge, particularly for catalyst-adsorbate systems. Training an MLP with a small data set can lead to overfitting, thus limiting its practical applications. This study explores the feasibility of developing computationally cost-effective and accurate MLPs for catalyst-adsorbate systems with a limited number of ab initio references by leveraging a transfer learning strategy from subsets of a comprehensive public database. Using the Open Catalyst Project 2020 (OC20)-a data set closely related to our system of interest-we pretrained MLP models on OC20 subsets using the ænet-PyTorch framework. We compared several strategies for database subset selection. Our findings indicate that MLPs constructed via transfer learning exhibit better generalizability than those constructed from scratch, as demonstrated by the consistency in the dynamics simulations. Remarkably, transfer learning enhances the stability and accuracy of MLPs for the CuAu/H
2 O system with approximately 600 reference data points. This approach achieved excellent extrapolation performance in molecular dynamics simulations for the larger CuAu/6H2 O system, maintaining stable and accurate predictions for up to 250 ps, whereas MLPs without transfer learning become unstable before reaching 50 ps. We also examine the potential limitations of this strategy. This work proposes an alternative, cost-effective approach for constructing MLPs for the challenging simulation of catalytic systems. Finally, we anticipate that this methodology will pave the way for broader applications in materials science and catalysis research, facilitating more efficient and accurate simulations across various systems., Competing Interests: The authors declare no competing financial interest., (© 2024 The Authors. Published by American Chemical Society.)- Published
- 2024
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4. Exploring the Polymorphism of Dicalcium Silicates Using Transfer Learning Enhanced Machine Learning Atomic Potentials.
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López-Zorrilla J, Aretxabaleta XM, and Manzano H
- Abstract
Belitic cements are a greener alternative to Ordinary Portland Cement due to the lower CO
2 associated with their production. However, their low reactivity with water is currently a drawback, resulting in longer setting times. In this study, we utilize a combination of evolutionary algorithms and machine learning atomic potentials (MLPs) to identify previously unreported belite polymorphs that may exhibit higher hydraulic reactivity than the known phases. To address the high computational demand of this methodology, we propose a novel transfer learning approach for generating MLPs. First, the models are pretrained on a large set of classical data (ReaxFF) and then retrained with density functional theory (DFT) data. We demonstrate that the transfer learning enhanced potentials exhibit higher accuracy, require less training data, and are more transferable than those trained exclusively on DFT data. The generated machine learning potential enables a fast, exhaustive, and reliable exploration of the dicalcium silicate polymorphs. This includes studying their stability through phonon analysis and calculating their structural and elastic properties. Overall, we identify ten new belite polymorphs within the energy range of the existing ones, including a layered phase with potentially high reactivity.- Published
- 2024
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5. Preoperative Planning of D3 Right Colectomy With 3-Dimensional Vascular Reconstruction.
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Colombari R, Pérez-Carpio C, Sánchez Rodríguez M, Martínez J, Dujovne P, Zorrilla J, Jiménez-Gómez LM, and Tejedor P
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- Humans, Preoperative Care methods, Male, Colonic Neoplasms surgery, Colonic Neoplasms pathology, Imaging, Three-Dimensional, Colectomy methods
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- 2024
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6. First Characterization of Tissue Oxygen Saturation Recovery Patterns in Pediatric Cardiac Surgery Patients Undergoing Remote Ischemic Preconditioning and the Association With Clinical Outcomes.
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Vélez-Esquivia MA, Pedroza S, Rivera R, Camayo-Zorrilla J, and Cruz-Suárez GA
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- Humans, Prospective Studies, Male, Female, Infant, Child, Preschool, Child, Ischemic Preconditioning methods, Longitudinal Studies, Adolescent, Treatment Outcome, Heart Defects, Congenital surgery, Cardiac Surgical Procedures methods, Cardiac Surgical Procedures adverse effects, Spectroscopy, Near-Infrared methods, Oxygen Saturation physiology
- Abstract
Objective: This study aimed to delineate the recovery patterns of regional oxygen saturation (SrO
2 ) in pediatric cardiac surgery patients subjected to remote ischemic preconditioning (RIPC), utilizing near-infrared spectroscopy (NIRS) for quantification. It also sought to establish the correlation between these perfusion patterns and postoperative clinical outcomes., Design: A prospective longitudinal observational study., Setting: The study was conducted at Fundación Valle Del Lili, a high-complexity service provider institution in Fundación Valle Del Lili., Participants: Pediatric patients (younger than 18 years of age) scheduled for elective cardiac surgery requiring cardiopulmonary bypass between August 2022 and July 2023., Interventions: RIPC was performed after anesthetic induction, involving cycles of ischemia and reperfusion on a lower limb. Monitoring included SrO2 using NIRS., Measurements and Main Results: The study identified 4 distinct patterns of SrO2 during RIPC. Findings demonstrated a significant association between the negative SrO2 pattern and increased postoperative adverse events, including extended hospital stays and higher mortality, while a positive pattern was associated with better outcomes., Conclusions: Specific patterns of SrO2 response to RIPC may serve as important indicators for risk stratification in congenital heart surgery. This study illustrated the potential of NIRS in detecting hypoxic states and predicting postoperative outcomes, emphasizing the need for standardized clinical interpretation of RIPC patterns., Competing Interests: Declaration of competing interest None., (Copyright © 2024 Elsevier Inc. All rights reserved.)- Published
- 2024
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7. Correction to: The role of transanal compared to laparoscopic total mesorectal excision (taTME vs. lapTME) for the treatment of mid‑low rectal cancer in obese patients: outcomes of a multicentre propensity‑matched analysis.
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Tejedor P, Arredondo J, Simó V, Zorrilla J, Baixauli J, Jiménez LM, and Pastor C
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- 2024
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8. Multi-step nucleation pathway of C-S-H during cement hydration from atomistic simulations.
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Aretxabaleta XM, López-Zorrilla J, Etxebarria I, and Manzano H
- Abstract
The Calcium Silicate Hydrate (C-S-H) nucleation is a crucial step during cement hydration and determines to a great extent the rheology, microstructure, and properties of the cement paste. Recent evidence indicates that the C-S-H nucleation involves at least two steps, yet the underlying atomic scale mechanism, the nature of the primary particles and their stability, or how they merge/aggregate to form larger structures is unknown. In this work, we use atomistic simulation methods, specifically DFT, evolutionary algorithms (EA), and Molecular Dynamics (MD), to investigate the structure and formation of C-S-H primary particles (PPs) from the ions in solution, and then discuss a possible formation pathway for the C-S-H nucleation. Our simulations indicate that even for small sizes the most stable clusters encode C-S-H structural motifs, and we identified a C
4 S4 H2 cluster candidate to be the C-S-H basic building block. We suggest a formation path in which small clusters formed by silicate dimers merge into large elongated aggregates. Upon dehydration, the C-S-H basic building blocks can be formed within the aggregates, and eventually crystallize., (© 2023. The Author(s).)- Published
- 2023
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9. The role of transanal compared to laparoscopic total mesorectal excision (taTME vs. lapTME) for the treatment of mid-low rectal cancer in obese patients: outcomes of a multicenter propensity-matched analysis.
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Tejedor P, Arredondo J, Simó V, Zorrilla J, Baixauli J, Jiménez LM, and Pastor C
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- Humans, Rectum surgery, Rectum pathology, Postoperative Complications etiology, Treatment Outcome, Transanal Endoscopic Surgery methods, Rectal Neoplasms surgery, Rectal Neoplasms pathology, Proctectomy adverse effects, Laparoscopy methods
- Abstract
To compare the rate of sphincter-saving interventions between transanal and laparoscopic Total Mesorectal Excision in this particular group of patients. A multicentre observational study was conducted using a prospective database, including patients diagnosed with rectal cancer below the peritoneal reflection and BMI ≥ 30 kg/m
2 , who underwent minimally invasive elective surgery over a 5-year period. Exclusion criteria were (1) sphincter and/or puborectalis invasion; (2) multi-visceral resections; (3) palliative surgeries. The study population was divided into two groups according to the intervention: transanal or laparoscopic total mesorectal excision. The primary outcome was the rate of sphincter-saving surgery. Secondary outcomes included conversion, postoperative complications, quality of the specimen, and survival. A total of 93 patients were included; 40 (43%) transanal total mesorectal excision were compared to 53 (57%) laparoscopic. In addition, 35 cases of transanal approach were case-matched with an equal number of laparoscopic approaches, based on gender, tumor's height, and neoadjuvant therapy. In both groups, 43% of the patients had low rectal cancer; however, the rate of sphincter-saving surgery was significantly higher in the transanal group (97% vs. 71%, p = 0.003). There were no conversions to open surgery in the transanal group, compared to 2 cases in the laparoscopic group (6%) (p = 0.246). The percentage of major complications was similar, including the rate of anastomotic leakage (10% transanal vs. 19% laparoscopic, p = 0.835). In our experience, higher percentages of sphincter-saving procedures and lower conversion rates are potential benefits of using the transanal approach in a complex surgical setting population of obese patients with mid-low rectal tumors when compared to laparoscopic., (© 2023. Italian Society of Surgery (SIC).)- Published
- 2023
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10. Subileal approach for laparoscopic right colectomy with D3 lymph node dissection: a step-by-step guide - a video vignette.
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Perez-Carpio C, Colombari Monteiro RC, Kayser S, Hurtado E, Dujovne P, Zorrilla J, Jiménez LM, and Tejedor P
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- Humans, Lymph Node Excision, Colectomy, Laparoscopy, Colonic Neoplasms surgery, Mesocolon surgery
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- 2023
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11. ænet-PyTorch: A GPU-supported implementation for machine learning atomic potentials training.
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López-Zorrilla J, Aretxabaleta XM, Yeu IW, Etxebarria I, Manzano H, and Artrith N
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In this work, we present ænet-PyTorch, a PyTorch-based implementation for training artificial neural network-based machine learning interatomic potentials. Developed as an extension of the atomic energy network (ænet), ænet-PyTorch provides access to all the tools included in ænet for the application and usage of the potentials. The package has been designed as an alternative to the internal training capabilities of ænet, leveraging the power of graphic processing units to facilitate direct training on forces in addition to energies. This leads to a substantial reduction of the training time by one to two orders of magnitude compared to the central processing unit implementation, enabling direct training on forces for systems beyond small molecules. Here, we demonstrate the main features of ænet-PyTorch and show its performance on open databases. Our results show that training on all the force information within a dataset is not necessary, and including between 10% and 20% of the force information is sufficient to achieve optimally accurate interatomic potentials with the least computational resources., (© 2023 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).)
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- 2023
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12. Super-refractory status epilepticus during blinatumomab initiation for B-cell acute lymphoblastic leukemia.
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Rao CK, Kamoroff S, Zorrilla J, Joyce M, and Galan FN
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- Male, Humans, Child, Seizures chemically induced, Seizures drug therapy, Antineoplastic Agents adverse effects, Precursor B-Cell Lymphoblastic Leukemia-Lymphoma drug therapy, Precursor B-Cell Lymphoblastic Leukemia-Lymphoma chemically induced, Antibodies, Bispecific adverse effects, Status Epilepticus etiology, Status Epilepticus chemically induced
- Abstract
Seizures have been reported as an adverse effect of blinatumomab, a bispecific T-cell engager monoclonal antibody, which is mainly used for the treatment of pediatric relapsed/refractory leukemia. Here, we present the first reported case of super-refractory status epilepticus in an 11-year-old boy with B-cell acute lymphoblastic leukemia (B-ALL) while receiving blinatumomab. Our patient had a complete return to baseline despite enduring encephalopathy, refractory subclinical seizures requiring prolonged therapeutic burst suppression and MRI signal changes. This case demonstrates that super-refractory status epilepticus is a possible neurotoxic adverse effect of blinatumomab treatment, which responds well to conventional protocols for acute refractory seizures.
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- 2022
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13. How to perform an anastomosis following a low anterior resection by transanal total mesorectal excision surgery: from top to bottom techniques.
- Author
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Tejedor P, Jimenez LM, Simó V, Arredondo J, Zorrilla J, and Pastor C
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- Anastomosis, Surgical methods, Humans, Postoperative Complications epidemiology, Postoperative Complications etiology, Postoperative Complications surgery, Rectum surgery, Retrospective Studies, Laparoscopy methods, Rectal Neoplasms surgery, Transanal Endoscopic Surgery methods
- Abstract
Aim: The aim was to describe the range of possibilities and our group's clinical outcomes when performing different types of anastomosis during transanal total mesorectal excision (taTME)., Method: A retrospective analysis was performed based on four taTME series from 2016 to 2021. Inclusion criteria were patients with rectal cancer in whom a sphincter-saving low anterior resection by taTME was performed. Four different techniques were employed for the anastomosis construction: (A) abdominal view, (B) transanal view, (C) hand-sewn coloanal anastomosis and (D) pull-through. Intra-operative and postoperative data were collected and compared., Results: A total of 161 patients were included. Tumour height was lower in groups C and D (4 [3-5] vs. 7 [6-8] group A vs. 6 [5-7] group B, P = 0.000), requiring a hand-sewn anastomosis. A transanal extraction of the specimen was more commonly performed in groups C and D (over 60% vs. 30% in groups A and B, P = 0.000). The rate of temporary stoma was similar between groups A, B and C (ranging from 84% to 98%) but was significantly lower in group D (P = 0.000). The overall rate of complications was similar between groups; however, group D had longer length of stay (15 days vs. 5-6 in groups A, B and C, P = 0.026)., Conclusion: Every type of anastomosis construction after a taTME procedure seems to be safe and feasible and should be chosen based on surgeon's experience, tumour height and the length of the rectal cuff after the rectal transection. Colorectal surgeons should be familiar with these techniques in order to choose the one that benefits each patient the most., (© 2022 The Association of Coloproctology of Great Britain and Ireland.)
- Published
- 2022
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