1. Understanding the mechanism of asymmetric gene regulation determined by the VqmA of vibriophage.
- Author
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Gu, Yue, Zhi, Shu-Xin, Yang, Na, and Yang, Wen-Si
- Subjects
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GENETIC regulation , *VIBRIO infections , *PROMOTERS (Genetics) , *VIBRIO cholerae , *TELECOMMUNICATION systems , *CHOLERA - Abstract
The quorum-sensing (QS) system between the phages and their hosts is important for the phage lysis-lysogeny decision. In Vibrio cholerae , the QS system consists of a LuxR-type receptor VqmA (VqmA Vc) and an autoinducer molecule 3,5-dimethylpyrazin-2-ol (DPO). A VqmA homolog encoded by vibriophage VP882 (VqmA Phage) can intervene the host QS system via binding to both the host-produced DPO and its cognate promoter (P qtip) to induce the phage lysogeny-to-lysis transition, whereas VqmA Vc cannot influence the VqmA Phage -induced pathway, suggesting an asymmetry regulation. In this study, we report the crystal structure of VqmA Phage -DPO complex at 2.65 Å and reveal that the mechanism of DPO recognition is conserved in VqmA homologs. Besides, we identify a non-classical palindrome sequence in P qtip , which can be effectively recognized by VqmA Phage but not VqmA Vc. The sequence contains an interval longer than that in the vqmR promoter recognized by VqmA Vc. In addition, the two DBD regions in the VqmA Phage dimer exhibit more relaxed architecture than that of the reported VqmA Vc , which is likely to be in the conformation that may easily bind to target promoter containing a longer interval. In summary, our findings provide a structural and biochemical basis for the DBD-dependent DNA recognition in different promoter regions in the phage lysogeny-to-lysis decision communication system, and provide clues for developing phage therapies against Vibrio cholerae infection. • The crystal structure of VqmA Phage -DPO complex was solved. • The molecular mechanism of DPO recognition is conserved in VqmA homologs. • DBD domain of VqmA Phage is important in qtip promoter recognition. • The target qtip promoter region of VqmA Phage was identified. • Demonstrates the difference of DNA sites recognized by VqmA Phage and VqmA Vc. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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