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The present paper investigates the alterations in ionospheric Total Electron Content (TEC) over a low latitude location Bangalore (Geographic latitude 12.9 ∘ N {12.9^{\circ }}\hspace{2.38387pt}\text{N} and longitude 77.6 ∘ E {77.6^{\circ }}\hspace{2.38387pt}\text{E} ; Geomagnetic latitude 4. 5 ∘ N 4.{5^{\circ }}\hspace{2.38387pt}\text{N}) in India, corresponding to the new Moon and full Moon days which are associated with abnormality in the eastward Equatorial Electrojet (EEJ) currents. It has been well established that even during certain geomagnetic quiet days, the EEJ current direction is reversed, resulting in a westward electrojet current called Counter Electrojet (CEJ) which is more prominent around the new Moon and full Moon days, favored by Sun–Moon–Earth alignments and lunar orbital characteristics. The Global Positioning System (GPS) derived TEC at Bangalore is investigated for full Moon and new Moon and their adjacent days during the period 2008–2015. The presence of CEJ during these days suggests the foremost role of driving EEJ current over the equator in the alterations of spatiotemporal distributions of TEC over the low latitude region. The deviations in quiet time TEC during new Moon and full Moon days are quantified in this study that may give a thrust towards modeling of lunar tidal effects in the flipped ionospheric parameter over the Indian region. The study would also support analysis of future solar eclipse effects on ionosphere those involve additional photoionization production/recombination processes corresponding to the passage of lunar shadow and cooling effects. Moreover, the results underpin modeling and mitigation of ionospheric error in the satellite-based positioning, navigation, and communication applications. [ABSTRACT FROM AUTHOR]