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As an attractive technique for measuring water vapor, the Global Navigation Satellite System (GNSS) faces additional challenges in dynamic applications such as in the open sea. We present a new method of retrieving precipitable water vapor (PWV) based on GNSS multi‐antenna precise point positioning (PPP), which uses GNSS data from multiple antennas and incorporates the constraints of known baseline vector and common tropospheric delay. The 4‐day shipborne dynamic experiment along the China coast demonstrates that the baseline vector constraint shortens the convergence time of positioning and atmospheric parameters, and also slightly improves their accuracies. The common tropospheric delay constraint helps to provide compromised, more robust, and sometimes more accurate PWV estimates. An evaluation with radiosonde‐derived PWVs shows that the combination of the two constraints achieves the best accuracy reaching 4.2 mm. This method helps to expand GNSS meteorology to the vast ocean and benefits satellite altimetry and weather forecasting. Plain Language Summary: Water vapor plays an important role in atmospheric processes ranging from global climate change to mesoscale and micro‐scale weather systems. The Global Navigation Satellite System (GNSS) is an attractive technique to measure water vapor, which has been extensively investigated for ground‐based static stations. In dynamic applications such as in the open sea, it is faced with additional challenges which may potentially degrade the performance. This study presents a new method for retrieving precipitable water vapor (PWV) based on GNSS multi‐antenna precise point positioning (PPP). It uses GNSS data from multiple antennas closely spaced and mounted on the same platform, and incorporates additional constraints of known baseline vector and common tropospheric delay. We have conducted a 4‐day shipborne dynamic experiment along the China coast and demonstrated that this method can shorten the convergence time and provide more robust and sometimes more accurate PWVs compared to conventional PPP. An accuracy level of 4.2 mm is achieved with this method for the ocean‐based dynamic experiment. This study helps to expand GNSS meteorology to challenging environments such as in the open sea, which will benefit weather forecasting and nowcasting. Key Points: A new method of retrieving precipitable water vapor (PWV) is presented based on Global Navigation Satellite System (GNSS) multi‐antenna precise point positioning (PPP)This method can shorten the convergence time and provide more robust and more accurate GNSS‐based PWVThe improved performance is helpful to expand GNSS meteorology to the vast ocean and benefits satellite altimetry and weather forecasting [ABSTRACT FROM AUTHOR]

Precise point positioning (PPP) can measure ground motions with a centimetre-level accuracy using only one receiver. It has been widely used in earthquake monitoring and earthquake early warning (EEW) systems. However, traditional PPP highly depends on well-established and robust internet infrastructure for data communication. Along with the broadcast ephemeris, the orbit and clock corrections transmitted by the B2b signals of BeiDou Navigation Satellite System (BDS) can be used to recover the precise products of GPS and BDS. Since the B2b products, namely the satellite state parameter messages, are accessible even without internet infrastructure, PPP with B2b signals is more suitable for real-time applications. This study witnesses the application of PPP with B2b products in seismic monitoring for the first time. The shake table experiments demonstrate that PPP with B2b can reach a millimetre-level accuracy in horizontal in earthquake monitoring for GPS-only, BDS-only and GPS/BDS combination. The application to the 2021 M w 7.4 Maduo earthquake shows that the accuracies of seismic displacements derived from GPS-only PPP with B2b products are 1.7, 2.4 and 1.7 cm in east, north and vertical components, compared with those from GPS-only PPP with final precise products. We therefore conclude that PPP with B2b products has a promising prospect in seismogeodesy and related applications such as EEW and rapid hazard response. [ABSTRACT FROM AUTHOR]

A Correction to this paper has been published: https://doi.org/10.1038/s41586-021-03379-5., Author(s): Ofer Shoshani [sup.1] [sup.2] , Simon F. Brunner [sup.3] , Rona Yaeger [sup.4] , Peter Ly [sup.1] [sup.2] [sup.10] [sup.11] , Yael Nechemia-Arbely [sup.1] [sup.2] [sup.12] [sup.13] , Dong [...]

We present a new method using Global Navigation Satellite System‐derived peak ground velocities to rapidly determine rupture characteristics for large earthquakes (Mw > 6). A three‐step strategy is adopted to sequentially estimate the fault rupture length, direction, and pattern (unilateral or bilateral). It does not require any a priori constraint on the fault plane, and can avoid drift and clipping problems in seismic data based inversion methods. Through retrospective analysis of six recent large earthquakes, the line‐source rupture characteristics can be determined within 30 s. Comparison with the United States Geological Survey released products demonstrates that the line‐source parameters can be estimated with considerable accuracy. We also analyze the contribution of the earthquake rupture characteristics to the prediction of ground shaking intensity. It is shown that the method has the potential to improve ground shaking predictions with applications in disaster assessment and emergency response. Plain Language Summary: Rapid generation of ground shaking maps after an earthquake is of great importance to identify serious damage regions. Timely information of large earthquake rupture characteristics (e.g., rupture length, direction, and pattern) helps improve the estimates of ground shaking maps. The traditional methods to estimate the rupture characteristics can be hindered by the overdependence on seismic data that may be unreliable for displacement estimation in the near‐field of large earthquakes. We propose a new method of rupture characteristics estimation using geodetic velocity waveforms from Global Navigation Satellite System recordings. Our method does not require any pre‐defined fault geometric information and can avoid drift and clipping problems suffered in traditional methods. Through retrospective analysis of six recent large events, we show that the method can efficiently estimate line‐source rupture characteristics within 30 s with considerable accuracy. The estimates of the rupture characteristics can improve ground shaking predictions and are expected to be applied in disaster assessment and emergency response. Key Points: We propose a new method for the rapid inversion of large earthquake rupture characteristics using high‐rate Global Navigation Satellite System dataThe fault rupture length, direction, and pattern (unilateral or bilateral) can be rapidly determined with considerable accuracyThe estimates of the rupture characteristics are expected to refine ground shaking predictions for large earthquakes (Mw > 6) [ABSTRACT FROM AUTHOR]

High-rate global navigation satellite system (GNSS) has emerged as an effective method to recover seismic waveforms without saturation and drifts, but it has the limitation of relatively lower sampling rate and higher noise level compared to seismic instruments. In this study, we present a new seismogeodetic method by integrating GNSS and accelerometer data to obtain optimal real-time seismic waveforms. Unlike traditional integration methods based on GNSS techniques of relative positioning or precise point positioning, the new method uses a GNSS time difference technique and inherits its unique advantage in real-time and high-accuracy velocity solutions. Furthermore, by incorporating the tightly coupled structure, it can overcome the cascading problem and provide more accurate and robust waveforms compared to its loosely coupled counterpart. The performance of this method is first compared with the traditional loosely coupled approach in challenging environments through a set of shake table experiments. With three GNSS satellites, this approach method can improve the accuracy of velocities and displacements by 42 and 87 per cent, respectively. With four or more GNSS satellites, the average improvements of the method reach 25 and 41 per cent for the velocities and displacements, respectively. We then validate the full performances of the method through simulated shake table experiments and collocated GNSS and accelerometer data during the 2016 M w 6.6 central Italy earthquake. The simulated and real-event analyses demonstrate that the new integration method can take full advantage of the complementary characteristics of GNSS and accelerometer sensors. By providing more accurate and broad-band velocity and displacement waveforms in a real-time or near-real-time manner, this method is quite promising in earthquake early warning and rapid source inversion. [ABSTRACT FROM AUTHOR]

Hi-C and chromatin immunoprecipitation (ChIP) have been combined to identify long-range chromatin interactions genome-wide at reduced cost and enhanced resolution, but extracting information from the resulting datasets has been challenging. Here we describe a computational method, MAPS, Model-based Analysis of PLAC-seq and HiChIP, to process the data from such experiments and identify long-range chromatin interactions. MAPS adopts a zero-truncated Poisson regression framework to explicitly remove systematic biases in the PLAC-seq and HiChIP datasets, and then uses the normalized chromatin contact frequencies to identify significant chromatin interactions anchored at genomic regions bound by the protein of interest. MAPS shows superior performance over existing software tools in the analysis of chromatin interactions from multiple PLAC-seq and HiChIP datasets centered on different transcriptional factors and histone marks. MAPS is freely available at . [ABSTRACT FROM AUTHOR]

Abstract: We present a new method of integrating Global Positioning System (GPS) and accelerometer data for high‐rate seismogeodesy. This method is based on the GPS variometric approach which can obtain seismic waves in real time using only the readily available broadcast products and a single receiver. Collocated 1‐Hz GPS and 200‐Hz accelerometer data from the 2016 MW 7.8 Kaikōura earthquake were analyzed to verify the effectiveness of this method. Results reveal that this method can provide broadband and more accurate velocities and displacements qualified to detect P wave arrivals. Moreover, this method can effectively avoid the aliasing problem present in the 1‐Hz GPS waveforms. We therefore conclude that this new method can be a powerful tool to capture seismic waves in real time, which is crucial for the purpose of tsunami early warning and earthquake rapid response. [ABSTRACT FROM AUTHOR]

For earthquake and tsunami early warning and emergency response, earthquake magnitude is the crucial parameter to be determined rapidly and correctly. However, a reliable and rapid measurement of the magnitude of an earthquake is a challenging problem, especially for large earthquakes (M > 8). Here, the magnitude is determined based on the GPS displacement waveform derived from real-time precise point positioning (RTPPP). RTPPP results are evaluated with an accuracy of 1 cm in the horizontal components and 2–3 cm in the vertical components, indicating that the RTPPP is capable of detecting seismic waves with amplitude of 1 cm horizontally and 2–3 cm vertically with a confidence level of 95 per cent. In order to estimate the magnitude, the unique information provided by the GPS displacement waveform is the horizontal peak displacement amplitude. We show that the empirical relation of Gutenberg (1945) between peak displacement and magnitude holds up to nearly magnitude 9.0 when displacements are measured with GPS. We tested the proposed method for three large earthquakes. For the 2010 Mw 7.2 El Mayor-Cucapah earthquake, our method provides a magnitude of M7.18 ± 0.18. For the 2011 Mw 9.0 Tohoku-oki earthquake the estimated magnitude is M8.74 ± 0.06, and for the 2010 Mw 8.8 Maule earthquake the value is M8.7 ± 0.1 after excluding some near-field stations. We, therefore, conclude that depending on the availability of high-rate GPS observations, a robust value of magnitude up to 9.0 for a point source earthquake can be estimated within tens of seconds or a few minutes after an event using a few GPS stations close to the epicentre. The rapid magnitude could be as a pre-requisite for tsunami early warning, fast source inversion and emergency response is feasible. [ABSTRACT FROM AUTHOR]

The international GNSS monitoring and assessment system (iGMAS) tracking network has been established by China to track multi-GNSS satellites. A key feature of iGMAS stations is the capability to fully track new navigation signals from the recently deployed BDS-3 satellites. In addition to the B1I and B3I signals inherited from BDS-2 satellites, the BDS-3 satellites are capable of transmitting new open service signals, including B1C at 1575.42 MHz, B2a at 1176.45 MHz, and B2b at 1207.14 MHz. In this contribution, we present a comprehensive analysis and characterization of GNSS signals tracked by different receivers and antennas equipped in the iGMAS network, especially as they relate to BDS-3 signals. Signal characteristics are analyzed in terms of the carrier-to-noise density ratio for the different signals as measured by the receiver, as well as pseudo-range noise and multipath. Special attention is given to discussion of the satellite-induced code bias, which has been identified to exist in the code observations of BDS-2, and the inter-frequency clock bias (IFCB), which has been observed in the triple-frequency carrier phase combinations of GPS Block IIF and BDS-2 satellites. The results indicate that the satellite-induced code bias is negligible for all signals of BDS-3 satellites, while small IFCB variations with peak amplitudes of about 1 cm can be recognized in BDS-3 triple-carrier combinations. [ABSTRACT FROM AUTHOR]

Graphical abstract Highlights • An adaptive and data-driven method for denoising high rate GNSS is introduced. • It is based on Complete Ensemble EMD and Multiscale Multiway PCA. • It can significantly eliminate the white noise and colored noise in the GNSS data. • It can be well suitable for nonlinear and nonstationary time series. Abstract In order to improve the possibility of correct interpretation of some geophysical phenomena such seismology, it is important to reduce systematic errors such as common mode error (CME) and multipath errors, and to improve the accuracy of high-rate (1–5 Hz) displacements. This paper focuses on accuracy enhancement and noise assessment of high-rate Global Navigation Satellite System (GNSS) position time series of regional network of GNSS stations. Complete ensemble empirical mode decomposition-based multiscale multiway principal component analysis (C-MSMPCA) denoising method is introduced to denoise the high-rate (1–5 Hz) GNSS position time series, whose performance was compared with those of modified sidereal filtering (MSF), stacking filtering, PCA and the recently developed multiscale multiway PCA (MSMPCA). It turns out that C-MSMPCA can significantly eliminate the high-frequency random noise and remove the low-frequency CME, and other systematic errors such as multipath errors. Furthermore, for denoising high-rate GNSS time series, C-MSMPCA is more precise than the other denoising methods. Irrespective of sampling rates and data processing strategies, C-MSMPCA can respectively reach the accuracy of submillimeter- and millimeter-levels on the horizontal and vertical components of high-rate GNSS displacements. Spectral analysis on the 1 Hz coordinate time series from the Sichuan GNSS Continuous Observing Network of China suggests that Gauss-Markov process is an adequate noise model for the noise characteristics of the filtered GNSS data using MSMPCA and C-MSMPCA. The CME magnitudes of MSMPCA are 2.61, 2.55, and 6.72 mm (east, north, and vertical), and those of C-MSMPCA are 2.69, 2.80, and 7.80 mm, respectively. [ABSTRACT FROM AUTHOR]

Summary Adenosine deaminase associated with RNA1 (ADAR1) deregulation contributes to therapeutic resistance in many malignancies. Here we show that ADAR1-induced hyper-editing in normal human hematopoietic progenitors impairs miR-26a maturation, which represses CDKN1A expression indirectly via EZH2, thereby accelerating cell-cycle transit. However, in blast crisis chronic myeloid leukemia progenitors, loss of EZH2 expression and increased CDKN1A oppose cell-cycle transit. Moreover, A-to-I editing of both the MDM2 regulatory microRNA and its binding site within the 3′ UTR region stabilizes MDM2 transcripts, thereby enhancing blast crisis progenitor propagation. These data reveal a dual mechanism governing malignant transformation of progenitors that is predicated on hyper-editing of cell-cycle-regulatory miRNAs and the 3′ UTR binding site of tumor suppressor miRNAs. Graphical Abstract Highlights • A-to-I RNA editing alters cell-cycle transit by impairing pri-miR-26a maturation • Enforced miR-26a expression reduces BC CML progenitor propagation in vivo • pri-miR-155 downregulation by ADAR1 stabilizes MDM2 in CML progenitors • Hyper-editing of 3′ UTR of MDM2 prevents miR-155 binding in CML progenitors Jiang et al. show that ADAR1 promotes HSPC proliferation by indirectly reducing CDKN1A expression, whereas it enhances the propagation of blast crisis chronic myeloid leukemia progenitors, which express high levels of CDKN1A, by editing the MDM2 regulatory miRNA and the miRNA binding site to stabilize MDM2 mRNA. [ABSTRACT FROM AUTHOR]

Summary Non-coding genetic variation is a major driver of phenotypic diversity and allows the investigation of mechanisms that control gene expression. Here, we systematically investigated the effects of >50 million variations from five strains of mice on mRNA, nascent transcription, transcription start sites, and transcription factor binding in resting and activated macrophages. We observed substantial differences associated with distinct molecular pathways. Evaluating genetic variation provided evidence for roles of ∼100 TFs in shaping lineage-determining factor binding. Unexpectedly, a substantial fraction of strain-specific factor binding could not be explained by local mutations. Integration of genomic features with chromatin interaction data provided evidence for hundreds of connected cis -regulatory domains associated with differences in transcription factor binding and gene expression. This system and the >250 datasets establish a substantial new resource for investigation of how genetic variation affects cellular phenotypes. [ABSTRACT FROM AUTHOR]