9 results on '"Aizawa, Shin-Ichi"'
Search Results
2. Effects of N-Glycosylation Site Removal in Archaellins on the Assembly and Function of Archaella in Methanococcus maripaludis.
- Author
-
Ding, Yan, Uchida, Kaoru, Aizawa, Shin-Ichi, Murphy, Kathleen, Berezuk, Alison, Khursigara, Cezar M., Chong, James P. J., and Jarrell, Ken F.
- Subjects
GLYCOSYLATION ,METHANOCOCCUS maripaludis ,SACCHARIDES ,PROTEINS ,ELECTRON microscopy - Abstract
In Methanococcus maripaludis S2, the swimming organelle, the archaellum, is composed of three archaellins, FlaB1
S2 , FlaB2S2 and FlaB3S2 . All three are modified with an N-linked tetrasaccharide at multiple sites. Disruption of the N-linked glycosylation pathway is known to cause defects in archaella assembly or function. Here, we explored the potential requirement of N-glycosylation of archaellins on archaellation by investigating the effects of eliminating the 4 N-glycosylation sites in the wildtype FlaB2S2 protein in all possible combinations either by Asn to Glu (N to Q) substitution or Asn to Asp (N to D) substitutions of the N-glycosylation sequon asparagine. The ability of these mutant derivatives to complement a non-archaellated ΔflaB2S2 strain was examined by electron microscopy (for archaella assembly) and swarm plates (for analysis of swimming). Western blot results showed that all mutated FlaB2S2 proteins were expressed and of smaller apparent molecular mass compared to wildtype FlaB2S2 , consistent with the loss of glycosylation sites. In the 8 single-site mutant complements, archaella were observed on the surface of Q2, D2 and D4 (numbers after N or Q refer to the 1st to 4th glycosylation site). Of the 6 double-site mutation complementations all were archaellated except D1,3. Of the 4 triple-site mutation complements, only D2,3,4 was archaellated. Elimination of all 4 N-glycosylation sites resulted in non-archaellated cells, indicating some minimum amount of archaellin glycosylation was necessary for their incorporation into stable archaella. All complementations that led to a return of archaella also resulted in motile cells with the exception of the D4 version. In addition, a series of FlaB2S2 scanning deletions each missing 10 amino acids was also generated and tested for their ability to complement the ΔflaB2S2 strain. While most variants were expressed, none of them restored archaellation, although FlaB2S2 harbouring a smaller 3-amino acid deletion was able to partially restore archaellation. [ABSTRACT FROM AUTHOR]- Published
- 2015
- Full Text
- View/download PDF
3. Identification of an Additional Minor Pilin Essential for Piliation in the Archaeon Methanococcus maripaludis.
- Author
-
Nair, Divya B., Chung, Daniel K. C., Schneider, James, Uchida, Kaoru, Aizawa, Shin-Ichi, and Jarrell, Ken F.
- Subjects
PILIN (Bacterial proteins) ,METHANOCOCCUS maripaludis ,ELECTRON microscopy ,POLYMERASE chain reaction ,TRANSCRIPTION factors ,MESSENGER RNA ,MOLECULAR genetics - Abstract
Methanococcus maripaludis is an archaeon with two studied surface appendages, archaella and type IV-like pili. Previously, the major structural pilin was identified as MMP1685 and three additional proteins were designated as minor pilins (EpdA, EpdB and EpdC). All of the proteins are likely processed by the pilin-specific prepilin peptidase EppA. Six other genes were identified earlier as likely encoding pilin proteins processed also by EppA. In this study, each of the six genes (mmp0528, mmp0600, mmp0601, mmp0709, mmp0903 and mmp1283) was deleted and the mutants examined by electron microscopy to determine their essentiality for pili formation. While mRNA transcripts of all genes were detected by RT-PCR, only the deletion of mmp1283 led to nonpiliated cells. This strain could be complemented back to a piliated state by supplying a wildtype copy of the mmp1283 gene in trans. This study adds to the complexity of the type IV pili system in M. maripaludis and raises questions about the functions of the remaining five pilin-like genes and whether M. maripaludis under other growth conditions may be able to assemble additional pili-like structures. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
4. Identification of genes involved in the assembly and attachment of a novel flagellin N-linked tetrasaccharide important for motility in the archaeon Methanococcus maripaludis.
- Author
-
VanDyke, David J., Wu, John, Logan, Susan M., Kelly, John F., Mizuno, Shino, Aizawa, Shin-Ichi, and Jarrell, Ken F.
- Subjects
PROTEINS ,GLUCURONIC acid ,GENES ,IMMUNOBLOTTING ,GLYCOSYLTRANSFERASES ,ELECTRON microscopy - Abstract
Recently, the flagellin proteins of Methanococcus maripaludis were found to harbour an N-linked tetrasaccharide composed of N-acetylgalactosamine, di-acetylated glucuronic acid, an acetylated and acetamidino-modified mannuronic acid linked to threonine, and a novel terminal sugar [( 5S)-2-acetamido-2,4-dideoxy-5-O-methyl-α-L- erythro-hexos-5-ulo-1,5-pyranose]. To identify genes involved in the assembly and attachment of this glycan, in-frame deletions were constructed in putative glycan assembly genes. Successful deletion of genes encoding three glycosyltransferases and an oligosaccharyltransferase (Stt3p homologue) resulted in flagellins of decreased molecular masses as evidenced by immunoblotting, indicating partial or completely absent glycan structures. Deletion of the oligosaccharyltransferase or the glycosyltransferase responsible for the transfer of the second sugar in the chain resulted in flagellins that were not assembled into flagella filaments, as evidenced by electron microscopy. Deletions of the glycosyltransferases responsible for the addition of the third and terminal sugars in the glycan were confirmed by mass spectrometry analysis of purified flagellins from these mutants. Although flagellated, these mutants had decreased motility as evidenced by semi-swarm plate analysis with the presence of each additional sugar improving movement capabilities. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
5. Purification and characterization of the flagellar hook-basal body complex of Bacillus subtilis.
- Author
-
Kubori, Tomoko, Okumura, Mitsumasa, Kobayashi, Nobuhiro, Nakamura, Dai, Iwakura, Masahiro, and Aizawa, Shin-Ichi
- Subjects
BACILLUS subtilis ,ELECTRON microscopy ,GEL electrophoresis ,SALMONELLA typhimurium ,GRAM-negative bacteria - Abstract
The flagellar hook-basal body (HBB) complex of the Gram-positive bacterium Bacillus subtilis was purified and analysed by electron microscopy, gel electrophoresis, and amino acid sequencing of the major component proteins. The purified HBB complex consisted of the inner (M and S) rings, a rod and a hook. There were no outer (P and L) rings that are found in Gram-negative bacteria. The hook was 15 nm in thickness and 70 nm in length, which is thinner and longer than the hook of Salmonella typhimurium. The hook protein had an apparent molecular mass of 29 kDa, and its N-terminal sequence was identical to that of B. subtilis FlgG, which was previously reported as a rod protein. The sequence of the reported FlgG protein of B. subtilis is more closely related to that of FlgE (the hook protein) rather than FlgG (the rod protein) of S. typhimurium, in spite of the difference of the apparent molecular masses between the two hook proteins (29 kDa versus 42 kDa). The hook-basal body contained six major proteins (with apparent moiecutar masses of 82, 59, 35, 32, 29 and 20 kDa) and two minor proteins (23 kDa and 13 kDa), which consistently appeared from preparation to preparation. The N-terminus of each of these proteins was sequenced. Comparison with protein databases revealed the following polypeptide-gene correspondences: 82 kDa, fliF; 59 kDa, flgK; 35 kDa, orfF; 32 kDa, yqhF; 23 kDa, orf3 of the flaA locus; 20 kDa, flgB and flgC; 13 kDa, not determined. The band at 20 kDa was a mixture of FlgB and FlgC, as revealed by two-dimensional gel analysis. Characteristic features of B. subtilis HBB are discussed in comparison with those of S. typhimiurium. [ABSTRACT FROM AUTHOR]
- Published
- 1997
- Full Text
- View/download PDF
6. Identification of an Additional Minor Pilin Essential for Piliation in the Archaeon Methanococcus maripaludis.
- Author
-
Nair, Divya B., Chung, Daniel K. C., Schneider, James, Uchida, Kaoru, Aizawa, Shin-Ichi, and Jarrell, Ken F.
- Subjects
- *
PILIN (Bacterial proteins) , *METHANOCOCCUS maripaludis , *ELECTRON microscopy , *POLYMERASE chain reaction , *TRANSCRIPTION factors , *MESSENGER RNA , *MOLECULAR genetics - Abstract
Methanococcus maripaludis is an archaeon with two studied surface appendages, archaella and type IV-like pili. Previously, the major structural pilin was identified as MMP1685 and three additional proteins were designated as minor pilins (EpdA, EpdB and EpdC). All of the proteins are likely processed by the pilin-specific prepilin peptidase EppA. Six other genes were identified earlier as likely encoding pilin proteins processed also by EppA. In this study, each of the six genes (mmp0528, mmp0600, mmp0601, mmp0709, mmp0903 and mmp1283) was deleted and the mutants examined by electron microscopy to determine their essentiality for pili formation. While mRNA transcripts of all genes were detected by RT-PCR, only the deletion of mmp1283 led to nonpiliated cells. This strain could be complemented back to a piliated state by supplying a wildtype copy of the mmp1283 gene in trans. This study adds to the complexity of the type IV pili system in M. maripaludis and raises questions about the functions of the remaining five pilin-like genes and whether M. maripaludis under other growth conditions may be able to assemble additional pili-like structures. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
7. Roles of Multiple Flagellins in Flagellar Formation and Flagellar Growth Post Bdelloplast Lysis in Bdellovibrio bacteriovorus
- Author
-
Iida, Yoshiko, Hobley, Laura, Lambert, Carey, Fenton, Andrew K., Sockett, R. Elizabeth, and Aizawa, Shin-Ichi
- Subjects
- *
BDELLOVIBRIO bacteriovorus , *PROTEINS , *FLAGELLA (Microbiology) , *GENETIC mutation , *ELECTRON microscopy , *GENETIC polymorphisms - Abstract
Abstract: Bdellovibrio bacteriovorus cells have a single polar flagellum whose helical pitch and diameter characteristically change near the midpoint, resulting in a tapered wave. There are six flagellin genes in the genome: fliC1 to fliC6. Accordingly, the flagellar filament is composed of several similar flagellin species. We have used knockout mutants of each gene and analyzed the mutational effects on the filament length and on the composition and localization of each flagellin species in the filament by electron microscopy and one- and two-dimensional polyacrylamide gel electrophoresis. The location and amounts of flagellins in a filament were determined to be as follows: a small amount of FliC3 at the proximal end, followed by a large amount of FliC5, a large amount of FliC1, a small amount of FliC2 in this order, and a large amount of FliC6 at the distal end. FliC4 was present at a low level, but the location was not determined. Filament lengths of newly born progeny cells increased during prolonged incubation in nutrient-deficient buffer. The newly formed part of the elongated filament was composed of mainly FliC6. Reverse transcription PCR analysis of flagellar gene expression over 5 days in buffer showed that fliC gene expression tailed off over 5 days in the wild-type cells, but in the fliC5 mutant, expression of the fliC2, fliC4, and fliC6 genes was elevated on day 5, suggesting that they may be expressed to compensate for the absence of a major component, FliC5. [Copyright &y& Elsevier]
- Published
- 2009
- Full Text
- View/download PDF
8. Signal Pathway in Salt-Activates Expression of the Salmonella Pathogenicity Island 1 Type III Secretion System in Salmonella enterica Serovar Typhimurium.
- Author
-
Mizusaki, Hideaki, Takaya, Akiko, Yamamoto, Tomoko, and Aizawa, Shin-Ichi
- Subjects
- *
SALMONELLA , *FOODBORNE diseases , *FOOD poisoning , *ENTEROBACTERIACEAE , *GEL electrophoresis , *MICROBIAL genetics , *COLLOIDS , *GENE expression , *ELECTRON microscopy - Abstract
Salmonella enterica serovar Typhimurium secretes virulence factors for invasion called Sip proteins or Sips into its hosts through a type III secretion system (T3SS). In the absence of a host, S. enterica induces Sip secretion in response to sucrose or simple salts, such as NaCl. We analyzed induction of host-independent Sip secretion by monitoring protein secretion by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), assembly of needle complexes by electron microscopy, and transcription of virulence regulatory genes by quantitative reverse transcriptase PCR (real-time PCR). SDS-PAGE showed that addition of sucrose or simple salts, such as NaCl, to the growth medium induced Sip secretion without altering flagellar protein secretion, which requires a distinct T3SS. Electron microscopy confirmed that the amount of secreted Sips increased as the number of assembled needle complexes increased. Real-time PCR revealed that added sucrose or NaCl enhanced transcription of hilA, hilC, and hilD, which encode known regulators of Salmonella virulence. However, epistasis analysis implicated HilD and HilA, but not HilC, in the direct pathway from the salt stimulus to the Sip secretion response. Further analyses showed that the BarA/SirA two-component signal transduction pathway, but not the two-component sensor kinase EnvZ, directly activated hilD and hilA transcription and thus Sip secretion in response to either sucrose or NaCl. Finally, real-time PCR showed that salt does not influence transcription of the BarA/SirA-dependent csrB and csrC genes. A model is proposed for the major pathway in which sucrose or salt signals to enhance virulence gene expression. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
9. Supramolecular structure of the Salmonella typhimurium type III protein secretion system.
- Author
-
Kubori, Tomoko, Matsushima, Yukiyasu, Nakamura, Dai, Uralil, Jaimol, Lara-Tejero, Maria, Sukhan, Anand, Galan, Jorge E., and Aizawa, Shin-Ichi
- Subjects
- *
ELECTRON microscopy , *SALMONELLA typhimurium , *CELL membranes , *CYTOLOGY - Abstract
Reports on experiments which used of electron microscopy to reveal superamolecular structures spanning the inner and outer membranes of flagellated and nonflagellated strains of Salmonella typhimurium. How these structures were not detected on strains carrying null mutations in components of the type III apparatus; Findings.
- Published
- 1998
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.