11 results on '"Aizawa, Shin-Ichi"'
Search Results
2. Native structure of a type IV secretion system core complex essential for Legionella pathogenesis
- Author
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Kubori, Tomoko, Koike, Masafumi, Bui, Xuan Thanh, Higaki, Saori, Aizawa, Shin-Ichi, and Nagai, Hiroki
- Published
- 2014
3. Effects of N-Glycosylation Site Removal in Archaellins on the Assembly and Function of Archaella in Methanococcus maripaludis.
- Author
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Ding, Yan, Uchida, Kaoru, Aizawa, Shin-Ichi, Murphy, Kathleen, Berezuk, Alison, Khursigara, Cezar M., Chong, James P. J., and Jarrell, Ken F.
- Subjects
GLYCOSYLATION ,METHANOCOCCUS maripaludis ,SACCHARIDES ,PROTEINS ,ELECTRON microscopy - Abstract
In Methanococcus maripaludis S2, the swimming organelle, the archaellum, is composed of three archaellins, FlaB1
S2 , FlaB2S2 and FlaB3S2 . All three are modified with an N-linked tetrasaccharide at multiple sites. Disruption of the N-linked glycosylation pathway is known to cause defects in archaella assembly or function. Here, we explored the potential requirement of N-glycosylation of archaellins on archaellation by investigating the effects of eliminating the 4 N-glycosylation sites in the wildtype FlaB2S2 protein in all possible combinations either by Asn to Glu (N to Q) substitution or Asn to Asp (N to D) substitutions of the N-glycosylation sequon asparagine. The ability of these mutant derivatives to complement a non-archaellated ΔflaB2S2 strain was examined by electron microscopy (for archaella assembly) and swarm plates (for analysis of swimming). Western blot results showed that all mutated FlaB2S2 proteins were expressed and of smaller apparent molecular mass compared to wildtype FlaB2S2 , consistent with the loss of glycosylation sites. In the 8 single-site mutant complements, archaella were observed on the surface of Q2, D2 and D4 (numbers after N or Q refer to the 1st to 4th glycosylation site). Of the 6 double-site mutation complementations all were archaellated except D1,3. Of the 4 triple-site mutation complements, only D2,3,4 was archaellated. Elimination of all 4 N-glycosylation sites resulted in non-archaellated cells, indicating some minimum amount of archaellin glycosylation was necessary for their incorporation into stable archaella. All complementations that led to a return of archaella also resulted in motile cells with the exception of the D4 version. In addition, a series of FlaB2S2 scanning deletions each missing 10 amino acids was also generated and tested for their ability to complement the ΔflaB2S2 strain. While most variants were expressed, none of them restored archaellation, although FlaB2S2 harbouring a smaller 3-amino acid deletion was able to partially restore archaellation. [ABSTRACT FROM AUTHOR]- Published
- 2015
- Full Text
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4. The role of the FliK molecular ruler in hook-length control in Salmonella enterica.
- Author
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Erhardt, Marc, Hirano, Takanori, Su, Yichu, Paul, Koushik, Wee, Daniel H., Mizuno, Shino, Aizawa, Shin-Ichi, and Hughes, Kelly T.
- Subjects
CATALYSIS ,PROTEINS ,MOLECULES ,FLAGELLATA ,GENETIC mutation ,SECRETION - Abstract
A molecular ruler, FliK, controls the length of the flagellar hook. FliK measures hook length and catalyses the secretion-substrate specificity switch from rod-hook substrate specificity to late substrate secretion, which includes the filament subunits. Here, we show normal hook-length control and filament assembly in the complete absence of the C-ring thus refuting the previous ‘cup’ model for hook-length control. Mutants of C-ring components, which are reported to produce short hooks, show a reduced rate of hook–basal body assembly thereby allowing for a premature secretion-substrate specificity switch. Unlike fliK null mutants, hook-length control in an autocleavage-defective mutant of flhB, the protein responsible for the switch to late substrate secretion, is completely abolished. FliK deletion variants that retain the ability to measure hook length are secreted thus demonstrating that FliK directly measures rod-hook length during the secretion process. Finally, we present a unifying model accounting for all published data on hook-length control in which FliK acts as a molecular ruler that takes measurements of rod-hook length while being intermittently secreted during the assembly process of the hook–basal body complex. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
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5. Identification of genes involved in the assembly and attachment of a novel flagellin N-linked tetrasaccharide important for motility in the archaeon Methanococcus maripaludis.
- Author
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VanDyke, David J., Wu, John, Logan, Susan M., Kelly, John F., Mizuno, Shino, Aizawa, Shin-Ichi, and Jarrell, Ken F.
- Subjects
PROTEINS ,GLUCURONIC acid ,GENES ,IMMUNOBLOTTING ,GLYCOSYLTRANSFERASES ,ELECTRON microscopy - Abstract
Recently, the flagellin proteins of Methanococcus maripaludis were found to harbour an N-linked tetrasaccharide composed of N-acetylgalactosamine, di-acetylated glucuronic acid, an acetylated and acetamidino-modified mannuronic acid linked to threonine, and a novel terminal sugar [( 5S)-2-acetamido-2,4-dideoxy-5-O-methyl-α-L- erythro-hexos-5-ulo-1,5-pyranose]. To identify genes involved in the assembly and attachment of this glycan, in-frame deletions were constructed in putative glycan assembly genes. Successful deletion of genes encoding three glycosyltransferases and an oligosaccharyltransferase (Stt3p homologue) resulted in flagellins of decreased molecular masses as evidenced by immunoblotting, indicating partial or completely absent glycan structures. Deletion of the oligosaccharyltransferase or the glycosyltransferase responsible for the transfer of the second sugar in the chain resulted in flagellins that were not assembled into flagella filaments, as evidenced by electron microscopy. Deletions of the glycosyltransferases responsible for the addition of the third and terminal sugars in the glycan were confirmed by mass spectrometry analysis of purified flagellins from these mutants. Although flagellated, these mutants had decreased motility as evidenced by semi-swarm plate analysis with the presence of each additional sugar improving movement capabilities. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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6. Systematic deletion analyses of the fla genes in the flagella operon identify several genes essential for proper assembly and function of flagella in the archaeon, Methanococcus maripaludis.
- Author
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Chaban, Bonnie, Ng, Sandy Y. M., Kanbe, Masaomi, Saltzman, Ilana, Nimmo, Graeme, Aizawa, Shin-Ichi, and Jarrell, Ken F.
- Subjects
GENES ,FLAGELLA (Microbiology) ,OPERONS ,ARCHAEBACTERIA ,PROTEINS ,METHANOGENS ,MICROSCOPY - Abstract
The archaeal flagellum is a unique motility apparatus in the prokaryotic domain, distinct from the bacterial flagellum. Most of the currently recognized archaeal flagella-associated genes fall into a single fla operon that contains the genes for the flagellin proteins (two or more genes designated as flaA or flaB), some variation of a set of conserved proteins of unknown function ( flaC, flaD, flaE, flaF, flaG and flaH), an ATPase ( flaI) and a membrane protein ( flaJ). In addition, the flaD gene has been demonstrated to encode two proteins: a full-length gene product and a truncated product derived from an alternate, internal start site. A systematic deletion approach was taken using the methanogen Methanococcus maripaludis to investigate the requirement and a possible role for these proposed flagella-associated genes. Markerless in-frame deletion strains were created for most of the genes in the M. maripaludis fla operon. In addition, a strain lacking the truncated FlaD protein [FlaD M(191)I] was also created. DNA sequencing and Southern blot analysis confirmed each mutant strain, and the integrity of the remaining operon was confirmed by immunoblot. With the exception of the ΔFlaB3 and FlaD M(191)I strains, all mutants were non-motile by light microscopy and non-flagellated by electron microscopy. A detailed examination of the ΔFlaB3 mutant flagella revealed that these structures had no hook region, while the FlaD M(191)I strain appeared identical to wild type. Each deletion strain was complemented, and motility and flagellation was restored. Collectively, these results demonstrate for first time that these fla operon genes are directly involved and critically required for proper archaeal flagella assembly and function. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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7. The filamentous type III secretion translocon of enteropathogenic Escherichia coli.
- Author
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Daniell, Sarah J., Takahashi, Noriko, Wilson, Rebecca, Friedberg, Devorah, Rosenshine, Ilan, Booy, Frank P., Shaw, Robert K., Knutton, Stuart, Frankel, Gad, and Aizawa, Shin-Ichi
- Subjects
ESCHERICHIA coli ,PROTEINS ,SECRETION - Abstract
Enteropathogenic Escherichia coli (EPEC) uses a type III secretion system (TTSS) to inject effector proteins into the plasma membrane and cytosol of infected cells. To translocate proteins, EPEC, like Salmonella and Shigella, is believed to assemble a macromolecular complex (type III secreton) that spans both bacterial membranes and has a short needle-like projection. However, there is a special interest in studying the EPEC TTSS owing to the fact that one of the secreted proteins, EspA, is assembled into a unique filamentous structure also required for protein translocation. In this report we present electron micrographs of EspA filaments which reveal a regular segmented substructure. Recently we have shown that deletion of the putative structural needle protein, EscF, abolished protein secretion and formation of EspA filaments. Moreover, we demonstrated that EspA can bind directly to EscF, suggesting that EspA filaments are physically linked to the EPEC needle complex. In this paper we provide direct evidence for the association between an EPEC bacterial membrane needle complex and EspA filaments, defining a new class of filamentous TTSS. [ABSTRACT FROM AUTHOR]
- Published
- 2001
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8. Flagellar proteins and type III-exported virulence factors are the predominant proteins secreted into the culture media of Salmonella typhimurium.
- Author
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Komoriya, Kaoru, Shibano, Naoko, Higano, Tomomi, Azuma, Norihiro, Yamaguchi, Shigeru, and Aizawa, Shin-Ichi
- Subjects
PROTEINS ,SALMONELLA typhimurium ,FLAGELLA (Microbiology) ,MICROBIAL virulence - Abstract
We analysed all major proteins secreted into culture media from Salmonella typhimurium . Proteins in culture supernatants were collected by trichloroacetic acid precipitation, separated in SDS–polyacrylamide gels and analysed by amino acid sequencing. Wild-type strain SJW1103 cells typically gave rise to nine bands in SDS gels: 89, 67, 58, 52, 50, 42, 40, 35 and (sometimes) 28 kDa. A search of the sequences in the available databases revealed that they were either flagellar proteins or virulence factors. Six of them were flagella specific: FlgK or HAP1 (58 kDa), FliC or flagellin (52 kDa), FliD or HAP2 (50 kDa), FlgE or hook protein (42 kDa), FlgL or HAP3 (35 kDa) and FlgD or hook-cap protein (28 kDa). The other four bands were specific for virulence factors: SipA (89 kDa), SipB (67 kDa), SipC (42 kDa) and InvJ (40 kDa). The 42 kDa band was a mixture of FlgE and SipC. We also analysed secreted proteins from more than 30 flagellar mutants, and they were categorized into four groups according to their band patterns: wild type, mot type, polyhook type and master gene type. Virulence factors were constantly secreted at a higher level in all flagellar mutants except a Δmot (motAB deletion) mutant, in which the amounts were greatly reduced. A new morphological pathway of flagellar biogenesis including protein secretion is presented. [ABSTRACT FROM AUTHOR]
- Published
- 1999
- Full Text
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9. Flagellar assembly in Salmonella typhimurium.
- Author
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Aizawa, Shin-Ichi
- Subjects
BACTERIA ,CELL membranes ,SALMONELLA typhimurium ,GENES ,PROTEINS - Abstract
The bacterial flagellum is a motility apparatus in which a long helical filament - the propeller - is driven by a rotary motor embedded in the cell surface. Out of more than 40 genes required for construction of a fully functional flagellum in Salmonella typhimurium, only 18 gene products have been identified in the mature structure. Some other flagellar proteins play logistical roles during construction, which involves the selective export of flagellar components through a central hole in the flagellum. The whole structure is constructed from base to tip by linear assembly; that is, by adding new components on the growing end, resulting in the distal growth of each substructure. Components of the substructures do not necessarily self-assemble, but often demand the help of other proteins. Recent progress in the understanding of flagellar assembly, which has been most extensively studied in S. typhimurium, is reviewed. [ABSTRACT FROM AUTHOR]
- Published
- 1996
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10. Roles of Multiple Flagellins in Flagellar Formation and Flagellar Growth Post Bdelloplast Lysis in Bdellovibrio bacteriovorus
- Author
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Iida, Yoshiko, Hobley, Laura, Lambert, Carey, Fenton, Andrew K., Sockett, R. Elizabeth, and Aizawa, Shin-Ichi
- Subjects
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BDELLOVIBRIO bacteriovorus , *PROTEINS , *FLAGELLA (Microbiology) , *GENETIC mutation , *ELECTRON microscopy , *GENETIC polymorphisms - Abstract
Abstract: Bdellovibrio bacteriovorus cells have a single polar flagellum whose helical pitch and diameter characteristically change near the midpoint, resulting in a tapered wave. There are six flagellin genes in the genome: fliC1 to fliC6. Accordingly, the flagellar filament is composed of several similar flagellin species. We have used knockout mutants of each gene and analyzed the mutational effects on the filament length and on the composition and localization of each flagellin species in the filament by electron microscopy and one- and two-dimensional polyacrylamide gel electrophoresis. The location and amounts of flagellins in a filament were determined to be as follows: a small amount of FliC3 at the proximal end, followed by a large amount of FliC5, a large amount of FliC1, a small amount of FliC2 in this order, and a large amount of FliC6 at the distal end. FliC4 was present at a low level, but the location was not determined. Filament lengths of newly born progeny cells increased during prolonged incubation in nutrient-deficient buffer. The newly formed part of the elongated filament was composed of mainly FliC6. Reverse transcription PCR analysis of flagellar gene expression over 5 days in buffer showed that fliC gene expression tailed off over 5 days in the wild-type cells, but in the fliC5 mutant, expression of the fliC2, fliC4, and fliC6 genes was elevated on day 5, suggesting that they may be expressed to compensate for the absence of a major component, FliC5. [Copyright &y& Elsevier]
- Published
- 2009
- Full Text
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11. Hundreds of Flagellar Basal Bodies Cover the Cell Surface of the Endosymbiotic Bacterium Buchnera aphidicola sp. Strain APS.
- Author
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Maezawa, Kazuki, Shigenobu, Shuji, Taniguchi, Hisaaki, Kubo, Takeo, Aizawa, Shin-ichi, and Morioka, Mizue
- Subjects
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PEA aphid , *GENOMES , *GENES , *PROTEINS , *ACYRTHOSIPHON - Abstract
Buchnera aphidicola is the endosymbiotic bacterium of the pea aphid. Due to its small genome size, Buchnera lacks many essential genes for autogenous life but obtains nutrients from the host. Although the Buchnera cell is nonmotile, it retains clusters of flagellar genes that lack the late genes necessary for motility, including the flagellin gene. In this study, we show that the flagellar genes are actually transcribed and translated and that the Buchnera cell surface is covered with hundreds of hook-basal-body (HBB) complexes. The abundance of HBB complexes suggests a role other than motility. We discuss the possibility that the HBB complex may serve as a protein transporter not only for the flagellar proteins but also for other proteins to maintain the symbiotic system. [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
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