39 results on '"Agata Daszkowska-Golec"'
Search Results
2. Drought-induced molecular changes in crown of various barley phytohormone mutants
- Author
-
Anetta Kuczyńska, Martyna Michałek, Piotr Ogrodowicz, Michał Kempa, Natalia Witaszak, Michał Dziurka, Damian Gruszka, Agata Daszkowska-Golec, Iwona Szarejko, Paweł Krajewski, and Krzysztof Mikołajczak
- Subjects
abiotic stress ,brassinosteroids ,functional annotation ,gibberellins ,mrna sequencing ,stress-induced proteins ,strigolactones ,Plant ecology ,QK900-989 ,Biology (General) ,QH301-705.5 - Abstract
One of the main signal transduction pathways that modulate plant growth and stress responses, including drought, is the action of phytohormones. Recent advances in omics approaches have facilitated the exploration of plant genomes. However, the molecular mechanisms underlying the response in the crown of barley, which plays an essential role in plant performance under stress conditions and regeneration after stress treatment, remain largely unclear. The objective of the present study was the elucidation of drought-induced molecular reactions in the crowns of different barley phytohormone mutants. We verified the hypothesis that defects of gibberellins, brassinosteroids, and strigolactones action affect the transcriptomic, proteomic, and hormonal response of barley crown to the transitory drought influencing plant development under stress. Moreover, we assumed that due to the strong connection between strigolactones and branching the hvdwarf14.d mutant, with dysfunctional receptor of strigolactones, manifests the most abundant alternations in crowns and phenotype under drought. Finally, we expected to identify components underlying the core response to drought which are independent of the genetic background. Large-scale analyses were conducted using gibberellins-biosynthesis, brassinosteroids-signaling, and strigolactones-signaling mutants, as well as reference genotypes. Detailed phenotypic evaluation was also conducted. The obtained results clearly demonstrated that hormonal disorders caused by mutations in the HvGA20ox2, HvBRI1, and HvD14 genes affected the multifaceted reaction of crowns to drought, although the expression of these genes was not induced by stress. The study further detected not only genes and proteins that were involved in the drought response and reacted specifically in mutants compared to the reaction of reference genotypes and vice versa, but also the candidates that may underlie the genotype-universal stress response. Furthermore, candidate genes involved in phytohormonal interactions during the drought response were identified. We also found that the interplay between hormones, especially gibberellins and auxins, as well as strigolactones and cytokinins may be associated with the regulation of branching in crowns exposed to drought. Overall, the present study provides novel insights into the molecular drought-induced responses that occur in barley crowns.
- Published
- 2024
- Full Text
- View/download PDF
3. Multi-omics insights into the positive role of strigolactone perception in barley drought response
- Author
-
Agata Daszkowska-Golec, Devang Mehta, R. Glen Uhrig, Agnieszka Brąszewska, Ondrej Novak, Irene M. Fontana, Michael Melzer, Tomasz Płociniczak, and Marek Marzec
- Subjects
Abscisic acid ,Barley (Hordeum vulgare) ,Drought ,Phytohormone ,Proteome ,Strigolactone ,Botany ,QK1-989 - Abstract
Abstract Background Drought is a major environmental stress that affects crop productivity worldwide. Although previous research demonstrated links between strigolactones (SLs) and drought, here we used barley (Hordeum vulgare) SL-insensitive mutant hvd14 (dwarf14) to scrutinize the SL-dependent mechanisms associated with water deficit response. Results We have employed a combination of transcriptomics, proteomics, phytohormonomics analyses, and physiological data to unravel differences between wild-type and hvd14 plants under drought. Our research revealed that drought sensitivity of hvd14 is related to weaker induction of abscisic acid-responsive genes/proteins, lower jasmonic acid content, higher reactive oxygen species content, and lower wax biosynthetic and deposition mechanisms than wild-type plants. In addition, we identified a set of transcription factors (TFs) that are exclusively drought-induced in the wild-type barley. Conclusions Critically, we resolved a comprehensive series of interactions between the drought-induced barley transcriptome and proteome responses, allowing us to understand the profound effects of SLs in alleviating water-limiting conditions. Several new avenues have opened for developing barley more resilient to drought through the information provided. Moreover, our study contributes to a better understanding of the complex interplay between genes, proteins, and hormones in response to drought, and underscores the importance of a multidisciplinary approach to studying plant stress response mechanisms.
- Published
- 2023
- Full Text
- View/download PDF
4. Update on stomata development and action under abiotic stress
- Author
-
Hubert Matkowski and Agata Daszkowska-Golec
- Subjects
stomata ,stress ,plants ,abiotic stress ,stomata development ,climate change ,Plant culture ,SB1-1110 - Abstract
Stomata, key gatekeepers of plant hydration, have long been known to play a pivotal role in mitigating the impacts of abiotic stressors. However, the complex molecular mechanisms underscoring this role remain unresolved fully and continue to be the subject of research. In the context of water-use efficiency (WUE), a key indicator of a plant’s ability to conserve water, this aspect links intrinsically with stomatal behavior. Given the pivotal role of stomata in modulating water loss, it can be argued that the complex mechanisms governing stomatal development and function will significantly influence a plant’s WUE under different abiotic stress conditions. Addressing these calls for a concerted effort to strengthen plant adaptability through advanced, targeted research. In this vein, recent studies have illuminated how specific stressors trigger alterations in gene expression, orchestrating changes in stomatal pattern, structure, and opening. This reveals a complex interplay between stress stimuli and regulatory sequences of essential genes implicated in stomatal development, such as MUTE, SPCH, and FAMA. This review synthesizes current discoveries on the molecular foundations of stomatal development and behavior in various stress conditions and their implications for WUE. It highlights the imperative for continued exploration, as understanding and leveraging these mechanisms guarantee enhanced plant resilience amid an ever-changing climatic landscape.
- Published
- 2023
- Full Text
- View/download PDF
5. Drought response of water-conserving and non-conserving spring barley cultivars
- Author
-
Mercy Appiah, Issaka Abdulai, Alan H. Schulman, Menachem Moshelion, Elvira S. Dewi, Agata Daszkowska-Golec, Gennady Bracho-Mujica, and Reimund P. Rötter
- Subjects
drought ideotype ,drought resilience ,intermediate drought ,conserving and non-conserving water-use behavior ,spring barley ,water-use efficiency ,Plant culture ,SB1-1110 - Abstract
IntroductionBreeding barley cultivars adapted to drought requires in-depth knowledge on physiological drought responses.MethodsWe used a high-throughput functional phenotyping platform to examine the response of four high-yielding European spring barley cultivars to a standardized drought treatment imposed around flowering.ResultsCv. Chanell showed a non-conserving water-use behavior with high transpiration and maximum productivity under well-watered conditions but rapid transpiration decrease under drought. The poor recovery upon re-irrigation translated to large yield losses. Cv. Baronesse showed the most water-conserving behavior, with the lowest pre-drought transpiration and the most gradual transpiration reduction under drought. Its good recovery (resilience) prevented large yield losses. Cv. Formula was less conserving than cv. Baronesse and produced low yet stable yields. Cv. RGT’s dynamic water use with high transpiration under ample water supply and moderate transpiration decrease under drought combined with high resilience secured the highest and most stable yields.DiscussionSuch a dynamic water-use behavior combined with higher drought resilience and favorable root traits could potentially create an ideotype for intermediate drought. Prospective studies will examine these results in field experiments and will use the newly gained understanding on water use in barley to improve process descriptions in crop simulation models to support crop model–aided ideotype design.
- Published
- 2023
- Full Text
- View/download PDF
6. High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines
- Author
-
Krzysztof Mikołajczak, Anetta Kuczyńska, Piotr Ogrodowicz, Agnieszka Kiełbowicz-Matuk, Hanna Ćwiek-Kupczyńska, Agata Daszkowska-Golec, Iwona Szarejko, Maria Surma, and Paweł Krajewski
- Subjects
Crown tissue ,Gibberellin-related genes ,Response to temperature ,Hordeum vulgare L. ,RNA-seq ,Single nucleotide polymorphism ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background High temperature shock is becoming increasingly common in our climate, affecting plant growth and productivity. The ability of a plant to survive stress is a complex phenomenon. One of the essential tissues for plant performance under various environmental stimuli is the crown. However, the molecular characterization of this region remains poorly investigated. Gibberellins play a fundamental role in whole-plant stature formation. This study identified plant stature modifications and crown-specific transcriptome re-modeling in gibberellin-deficient barley sdw1.a (BW827) and sdw1.d (BW828) mutants exposed to increased temperature. Results The deletion around the sdw1 gene in BW827 was found to encompass at least 13 genes with primarily regulatory functions. A bigger genetic polymorphism of BW828 than of BW827 in relation to wild type was revealed. Transcriptome-wide sequencing (RNA-seq) revealed several differentially expressed genes involved in gibberellin metabolism and heat response located outside of introgression regions. It was found that HvGA20ox4, a paralogue of the HvGA20ox2 gene, was upregulated in BW828 relative to other genotypes, which manifested as basal internode elongation. The transcriptome response to elevated temperature differed in the crown of sdw1.a and sdw1.d mutants; it was most contrasting for HvHsf genes upregulated under elevated temperature in BW828, whereas those specific to BW827 were downregulated. In-depth examination of sdw1 mutants revealed also some differences in their phenotypes and physiology. Conclusions We concluded that despite the studied sdw1 mutants being genetically related, their heat response seemed to be genotype-specific and observed differences resulted from genetic background diversity rather than single gene mutation, multiple gene deletion, or allele-specific expression of the HvGA20ox2 gene. Differences in the expressional reaction of genes to heat in different sdw1 mutants, found to be independent of the polymorphism, could be further explained by in-depth studies of the regulatory factors acting in the studied system. Our findings are particularly important in genetic research area since molecular response of crown tissue has been marginally investigated, and can be useful for wide genetic research of crops since barley has become a model plant for them.
- Published
- 2022
- Full Text
- View/download PDF
7. Alternative splicing in ABA signaling during seed germination
- Author
-
Ewa Sybilska and Agata Daszkowska-Golec
- Subjects
alternative splicing ,abscisic acid ,seed germination ,protein isoforms ,splice variant ,splicing factors ,Plant culture ,SB1-1110 - Abstract
Seed germination is an essential step in a plant’s life cycle. It is controlled by complex physiological, biochemical, and molecular mechanisms and external factors. Alternative splicing (AS) is a co-transcriptional mechanism that regulates gene expression and produces multiple mRNA variants from a single gene to modulate transcriptome diversity. However, little is known about the effect of AS on the function of generated protein isoforms. The latest reports indicate that alternative splicing (AS), the relevant mechanism controlling gene expression, plays a significant role in abscisic acid (ABA) signaling. In this review, we present the current state of the art about the identified AS regulators and the ABA-related changes in AS during seed germination. We show how they are connected with the ABA signaling and the seed germination process. We also discuss changes in the structure of the generated AS isoforms and their impact on the functionality of the generated proteins. Also, we point out that the advances in sequencing technology allow for a better explanation of the role of AS in gene regulation by more accurate detection of AS events and identification of full-length splicing isoforms.
- Published
- 2023
- Full Text
- View/download PDF
8. Editorial: Applications of long-read sequencing in plant genomics and transcriptomics
- Author
-
Agata Daszkowska-Golec, Martin Mascher, and Runxuan Zhang
- Subjects
long-read sequencing ,plant genomics ,transcriptomics ,RNA-Seq ,bioinformatics ,Plant culture ,SB1-1110 - Published
- 2023
- Full Text
- View/download PDF
9. Influence of short-term macronutrient deprivation in maize on photosynthetic characteristics, transpiration and pigment content
- Author
-
Krzysztof Sitko, Żaneta Gieroń, Michał Szopiński, Paulina Zieleźnik-Rusinowska, Szymon Rusinowski, Marta Pogrzeba, Agata Daszkowska-Golec, Hazem M. Kalaji, and Eugeniusz Małkowski
- Subjects
Medicine ,Science - Abstract
Abstract The aim of the research was to compare the impact of short-term deprivation of selected macronutrients (Ca, K, Mg and P) on the photosynthetic characteristics, transpiration and pigment content in maize. The strongest inhibition of photosynthesis was caused by a deprivation of Mg, which was visible as a decrease in the photosynthetic and transpiration rates, stomatal conductance, photosystem II (PSII) performance, chlorophyll and flavonol content with a simultaneously increased content of anthocyanins. In the K-deprived plants, a decrease in the photosynthetic rate was observed. However, the transpiration rate and stomatal conductance did not differ significantly compared with the control. In the K-deprived plants, a decrease in chlorophyll and an increase in the anthocyanin content were also observed. We showed that Ca starvation resulted in a decrease in the photosynthetic and transpiration rates, stomatal conductance and PSII performance, while the pigment content was not significantly different compared with the control. In the case of P-deprived plants, we observed a decrease in the photosynthetic and transpiration rates. Interestingly, the inhibition of stomatal conductance was the strongest in the P-deprived plants compared with all of the investigated elements. However, the performance of PSII was not significantly affected by P starvation compared with the control. Our results present for the first time a comprehensive analysis of the effect of short-term macronutrient deprivation on photosynthesis and transpiration in maize plants.
- Published
- 2019
- Full Text
- View/download PDF
10. Barley ABI5 (Abscisic Acid INSENSITIVE 5) Is Involved in Abscisic Acid-Dependent Drought Response
- Author
-
Anna Collin, Agata Daszkowska-Golec, Marzena Kurowska, and Iwona Szarejko
- Subjects
abscisic acid ,monocots ,barley ,Hordeum vulgare ,water deficit ,stress ,Plant culture ,SB1-1110 - Abstract
ABA INSENSITIVE 5 (ABI5) is a basic leucine zipper (bZIP) transcription factor which acts in the abscisic acid (ABA) network and is activated in response to abiotic stresses. However, the precise role of barley (Hordeum vulgare) ABI5 in ABA signaling and its function under stress remains elusive. Here, we show that HvABI5 is involved in ABA-dependent regulation of barley response to drought stress. We identified barley TILLING mutants carrying different alleles in the HvABI5 gene and we studied in detail the physiological and molecular response to drought and ABA for one of them. The hvabi5.d mutant, carrying G1751A transition, was insensitive to ABA during seed germination, yet it showed the ability to store more water than its parent cv. “Sebastian” (WT) in response to drought stress. The drought-tolerant phenotype of hvabi5.d was associated with better membrane protection, higher flavonoid content, and faster stomatal closure in the mutant under stress compared to the WT. The microarray transcriptome analysis revealed up-regulation of genes associated with cell protection mechanisms in the mutant. Furthermore, HvABI5 target genes: HVA1 and HVA22 showed higher activity after drought, which may imply better adaptation of hvabi5.d to stress. On the other hand, chlorophyll content in hvabi5.d was lower than in WT, which was associated with decreased photosynthesis efficiency observed in the mutant after drought treatment. To verify that HvABI5 acts in the ABA-dependent manner we analyzed expression of selected genes related to ABA pathway in hvabi5.d and its WT parent after drought and ABA treatments. The expression of key genes involved in ABA metabolism and signaling differed in the mutant and the WT under stress. Drought-induced increase of expression of HvNCED1, HvBG8, HvSnRK2.1, and HvPP2C4 genes was 2–20 times higher in hvabi5.d compared to “Sebastian”. We also observed a faster stomatal closure in hvabi5.d and much higher induction of HvNCED1 and HvSnRK2.1 genes after ABA treatment. Together, these findings demonstrate that HvABI5 plays a role in regulation of drought response in barley and suggest that HvABI5 might be engaged in the fine tuning of ABA signaling by a feedback regulation between biosynthetic and signaling events. In addition, they point to different mechanisms of HvABI5 action in regulating drought response and seed germination in barley.
- Published
- 2020
- Full Text
- View/download PDF
11. Updates on the Role of ABSCISIC ACID INSENSITIVE 5 (ABI5) and ABSCISIC ACID-RESPONSIVE ELEMENT BINDING FACTORs (ABFs) in ABA Signaling in Different Developmental Stages in Plants
- Author
-
Anna Collin, Agata Daszkowska-Golec, and Iwona Szarejko
- Subjects
ABI5 ,ABF ,AREB ,abiotic stress response ,abscisic acid ,phytohormone crosstalk ,Cytology ,QH573-671 - Abstract
The core abscisic acid (ABA) signaling pathway consists of receptors, phosphatases, kinases and transcription factors, among them ABA INSENSITIVE 5 (ABI5) and ABRE BINDING FACTORs/ABRE-BINDING PROTEINs (ABFs/AREBs), which belong to the BASIC LEUCINE ZIPPER (bZIP) family and control expression of stress-responsive genes. ABI5 is mostly active in seeds and prevents germination and post-germinative growth under unfavorable conditions. The activity of ABI5 is controlled at transcriptional and protein levels, depending on numerous regulators, including components of other phytohormonal pathways. ABFs/AREBs act redundantly in regulating genes that control physiological processes in response to stress during vegetative growth. In this review, we focus on recent reports regarding ABI5 and ABFs/AREBs functions during abiotic stress responses, which seem to be partially overlapping and not restricted to one developmental stage in Arabidopsis and other species. Moreover, we point out that ABI5 and ABFs/AREBs play a crucial role in the core ABA pathway’s feedback regulation. In this review, we also discuss increased stress tolerance of transgenic plants overexpressing genes encoding ABA-dependent bZIPs. Taken together, we show that ABI5 and ABFs/AREBs are crucial ABA-dependent transcription factors regulating processes essential for plant adaptation to stress at different developmental stages.
- Published
- 2021
- Full Text
- View/download PDF
12. HorTILLUS—A Rich and Renewable Source of Induced Mutations for Forward/Reverse Genetics and Pre-breeding Programs in Barley (Hordeum vulgare L.)
- Author
-
Miriam E. Szurman-Zubrzycka, Justyna Zbieszczyk, Marek Marzec, Janusz Jelonek, Beata Chmielewska, Marzena M. Kurowska, Milena Krok, Agata Daszkowska-Golec, Justyna Guzy-Wrobelska, Damian Gruszka, Monika Gajecka, Patrycja Gajewska, Magdalena Stolarek, Piotr Tylec, Paweł Sega, Sabina Lip, Monika Kudełko, Magdalena Lorek, Małgorzata Gorniak-Walas, Anna Malolepszy, Nina Podsiadlo, Katarzyna P. Szyrajew, Anete Keisa, Zodwa Mbambo, Elena Todorowska, Marek Gaj, Zygmunt Nita, Wanda Orlowska-Job, Miroslaw Maluszynski, and Iwona Szarejko
- Subjects
TILLING ,reverse genetics ,mutation ,barley ,MNU ,sodium azide ,Plant culture ,SB1-1110 - Abstract
TILLING (Targeting Induced Local Lesions IN Genomes) is a strategy used for functional analysis of genes that combines the classical mutagenesis and a rapid, high-throughput identification of mutations within a gene of interest. TILLING has been initially developed as a discovery platform for functional genomics, but soon it has become a valuable tool in development of desired alleles for crop breeding, alternative to transgenic approach. Here we present the HorTILLUS (Hordeum—TILLING—University of Silesia) population created for spring barley cultivar “Sebastian” after double-treatment of seeds with two chemical mutagens: sodium azide (NaN3) and N-methyl-N-nitrosourea (MNU). The population comprises more than 9,600 M2 plants from which DNA was isolated, seeds harvested, vacuum-packed, and deposited in seed bank. M3 progeny of 3,481 M2 individuals was grown in the field and phenotyped. The screening for mutations was performed for 32 genes related to different aspects of plant growth and development. For each gene fragment, 3,072–6,912 M2 plants were used for mutation identification using LI-COR sequencer. In total, 382 mutations were found in 182.2 Mb screened. The average mutation density in the HorTILLUS, estimated as 1 mutation per 477 kb, is among the highest mutation densities reported for barley. The majority of mutations were G/C to A/T transitions, however about 8% transversions were also detected. Sixty-one percent of mutations found in coding regions were missense, 37.5% silent and 1.1% nonsense. In each gene, the missense mutations with a potential effect on protein function were identified. The HorTILLUS platform is the largest of the TILLING populations reported for barley and best characterized. The population proved to be a useful tool, both in functional genomic studies and in forward selection of barley mutants with required phenotypic changes. We are constantly renewing the HorTILLUS population, which makes it a permanent source of new mutations. We offer the usage of this valuable resource to the interested barley researchers on cooperative basis.
- Published
- 2018
- Full Text
- View/download PDF
13. Mutation in HvCBP20 (Cap Binding Protein 20) Adapts Barley to Drought Stress at Phenotypic and Transcriptomic Levels
- Author
-
Agata Daszkowska-Golec, Anna Skubacz, Marek Marzec, Michal Slota, Marzena Kurowska, Monika Gajecka, Patrycja Gajewska, Tomasz Płociniczak, Krzysztof Sitko, Andrzej Pacak, Zofia Szweykowska-Kulinska, and Iwona Szarejko
- Subjects
Hordeum vulgare ,drought ,CBP20 ,transcriptome ,epidermal pattern ,abscisic acid ,Plant culture ,SB1-1110 - Abstract
CBP20 (Cap-Binding Protein 20) encodes a small subunit of the cap-binding complex (CBC), which is involved in the conserved cell processes related to RNA metabolism in plants and, simultaneously, engaged in the signaling network of drought response, which is dependent on ABA. Here, we report the enhanced tolerance to drought stress of barley mutant in the HvCBP20 gene manifested at the morphological, physiological, and transcriptomic levels. Physiological analyses revealed differences between the hvcbp20.ab mutant and its WT in response to a water deficiency. The mutant exhibited a higher relative water content (RWC), a lower stomatal conductance and changed epidermal pattern compared to the WT after drought stress. Transcriptome analysis using the Agilent Barley Microarray integrated with observed phenotypic traits allowed to conclude that the hvcbp20.ab mutant exhibited better fitness to stress conditions by its much more efficient and earlier activation of stress-preventing mechanisms. The network hubs involved in the adjustment of hvcbp20.ab mutant to the drought conditions were proposed. These results enabled to make a significant progress in understanding the role of CBP20 in the drought stress response.
- Published
- 2017
- Full Text
- View/download PDF
14. The role and regulation of ABI5 (ABA-insensitive 5) in plant development, abiotic stress responses and phytohormone crosstalk
- Author
-
Anna Skubacz, Agata Daszkowska-Golec, and Iwona Szarejko
- Subjects
Abscisic Acid ,Brassinosteroids ,posttranslational modification ,Jasmonates ,ABI5 ,abiotic stress response ,Plant culture ,SB1-1110 - Abstract
ABA Insensitive 5 (ABI5) is a basic leucine zipper (bZIP) transcription factor that plays a key role in the regulation of seed germination and early seedling growth in the presence of ABA and abiotic stresses. ABI5 functions in the core ABA signaling, which is composed of PYR/PYL/RCAR receptors, PP2C phosphatases and SnRK2 kinases, through the regulation of the expression of genes that contain the ABSCISIC ACID RESPONSE ELEMENT (ABRE) motif within their promoter region. The regulated targets include stress adaptation genes, e.g. LEA proteins. However, the expression and activation of ABI5 is not only dependent on the core ABA signaling. Many transcription factors such as ABI3, ABI4, MYB7 and WRKYs play either a positive or a negative role in the regulation of ABI5 expression. Additionally, the stability and activity of ABI5 are also regulated by other proteins through post-translational modifications such as phosphorylation, ubiquitination, sumoylation and S-nitrosylation. Moreover, ABI5 also acts as an ABA and other phytohormone signaling integrator. Components of auxin, cytokinin, gibberellic acid, jasmonate and brassinosteroid signaling and metabolism pathways were shown to take part in ABI5 regulation and/or to be regulated by ABI5. Monocot orthologues of AtABI5 have been identified. Although their role in the molecular and physiological adaptations during abiotic stress have been elucidated, knowledge about their detailed action still remains elusive.Here, we describe the recent advances in understanding the action of ABI5 in early developmental processes and the adaptation of plants to unfavorable environmental conditions. We also focus on ABI5 relation to other phytohormones in the abiotic stress response of plants.
- Published
- 2016
- Full Text
- View/download PDF
15. Drought response behavior of risk-taking and conserving spring barley cultivars
- Author
-
Mercy Appiah, Issaka Abdulai, Elvira S. Dewi, Agata Daszkowska-Golec, Gennady Bracho-Mujica, Alan Schulman, Menachem Moshelion, and Reimund P. Rötter
- Abstract
Breeding drought resilient crops requires understanding the mechanisms underlying plant physiological responses to different drought patterns and how these vary within species.Two main plant water use strategies are distinguished in the literature, referred to as “risk – taking” (anisohydric) and “conserving” (isohydric). Under well-watered conditions, risk takers exhibit a higher transpiration rate (TR) associated with a greater CO2 assimilation rate, and hence, greater dry matter production than conserving plants which have a tighter stomatal control. Depending on the root traits the transpiration-limiting soil moisture level (θcrit) can differ between plants with similar shoot traits. A high θcrit (e.g. due to shallow roots) entails early stomata closure. This study aimed at examining the drought response of four high-yielding European spring barley cultivars considered to exhibit different response behavior.We collected detailed plant physiological data with a high- throughput functional phenotyping platform (Plantarray®, Plant-Ditech) and analyzed final yield parameters. Around flowering cv. Chanelle (CHAN), RGT Planet (RGT), Formula (FORM), and Baroness (BAR) were exposed to 12 days of drought. Based on higher TR, higher biomass and grain yield under well-watered conditions and the faster TR reduction below θcrit ,CHAN ranked as very risk taking and RGT as risk taking in contrast to conserving FORM and very conserving BAR.Drought effects on final yield are closely linked to the plants recovery potential, i.e. the ability to increase TR to control plant levels upon re-irrigation. The highest yielding cultivar under ample water supply, CHAN, showed a significantly impaired recovery potential and suffered notable yield penalties under drought (24%). The very conserving response behavior of BAR resulted in good recovery, minimal yield loss (-2% yield) and a final grain yield that was almost similar to very risk taking CHAN (Δ 5g/pot). FORM produced the lowest yields under control and stress conditions yet suffered no drought induced yield penalties, probably due to a better adapted root system. The lower θcrit of FORM delayed stomata closure and the breakdown of assimilation. FORM and RGT had similar recovery rates.RGT produced the second highest yield under well-watered conditions and drought did not cause any yield losses. Under ample water supply, RGT behaved like a risk taker, whereby the high TR allowed it to be more productive than the conserving cultivars. RGT switched to a more conserving behavior under drought where it only gradually (same slope as FORM) decreased TR below θcrit and was thereby more productive than very risk taking CHAN. This rather dynamic water use behavior made RGT the best performing cultivar in the here examined drought scenario.A higher number of seeds per spike (along with reduced kernel size) likely contributed to the yield stability observed under drought in FORM and RGT the exact physiological mechanisms of which still require more investigation. Prospective studies will examine different drought patterns and durations and implement the gained knowledge into crop simulation models for upscaling. Keywords: water-response behavior, isohydric; anisohydric; spring barley, drought
- Published
- 2023
- Full Text
- View/download PDF
16. A complex signaling trio in seed germination: Auxin-JA-ABA
- Author
-
Ewa Sybilska and Agata Daszkowska-Golec
- Subjects
Plant Science - Published
- 2023
- Full Text
- View/download PDF
17. ABA is important not only under stress – revealed by the discovery of new ABA transporters
- Author
-
Agata Daszkowska-Golec
- Subjects
Plant Science - Published
- 2022
- Full Text
- View/download PDF
18. Barley strigolactone signalling mutant hvd14.d reveals the role of strigolactones in abscisic acid‐dependent response to drought
- Author
-
Iwona Szarejko, Michael Melzer, Anna Collin, Kai Eggert, Marek Marzec, and Agata Daszkowska-Golec
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Mutant ,Arabidopsis ,Strigolactone ,Germination ,Receptors, Cell Surface ,Plant Science ,Biology ,01 natural sciences ,Lactones ,03 medical and health sciences ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Arabidopsis thaliana ,Abscisic acid ,Plant Proteins ,Dehydration ,Arabidopsis Proteins ,fungi ,Wild type ,Photosystem II Protein Complex ,food and beverages ,Hordeum ,biology.organism_classification ,Droughts ,Cell biology ,Chloroplast ,030104 developmental biology ,chemistry ,Mutation ,Plant Stomata ,Seeds ,Hordeum vulgare ,Heterocyclic Compounds, 3-Ring ,Abscisic Acid ,Signal Transduction ,010606 plant biology & botany - Abstract
Strigolactones (SLs) are a group of plant hormones involved in many aspects of plant development and stress adaptation. Here, we investigated the drought response of a barley (Hordeum vulgare L.) mutant carrying a missense mutation in the gene encoding the SL-specific receptor HvD14. Our results clearly showed that hvd14.d mutant is hyper-sensitive to drought stress. This was illustrated by a lower leaf relative water content (RWC), impaired photosynthesis, disorganization of chloroplast structure, altered stomatal density and slower closure of stomata in response to drought in the mutant compared to the wild type parent cultivar Sebastian. Although the content of abscisic acid (ABA) and its derivatives remained unchanged in the mutant, significant differences in expression of genes related to ABA biosynthesis were observed. Moreover, hvd14.d was insensitive to ABA during seed germination. Analysis of Arabidopsis thaliana mutant atd14-1 also demonstrated that mutation in the SL receptor resulted in increased sensitivity to drought. Our results indicate that the drought-sensitive phenotype of barley SL mutant might be caused by a disturbed ABA metabolism and/or signalling pathways. These results together uncovered a link between SL signalling and ABA-dependent drought stress response in barley.
- Published
- 2020
- Full Text
- View/download PDF
19. The landscape of plant genomics after 20 years
- Author
-
Agata Daszkowska-Golec
- Subjects
Arabidopsis ,Genetics ,Genomics ,Sequence Analysis, DNA ,Plants ,Genome, Plant - Abstract
Many letters of the plant genetic code have been read since the first plant genome was published in 2000 for Arabidopsis. In a recent paper, Marks et al. examined 798 plant genomes and provide a current view of plant genomics in terms of the quality of the assemblies, coupled with their taxonomical and geographical distribution.
- Published
- 2022
- Full Text
- View/download PDF
20. Identification of the Genetic Basis of Response to De-Acclimation in Winter Barley
- Author
-
Przemysław Kopeć, Agata Daszkowska-Golec, Magdalena Wójcik-Jagła, Marcin Rapacz, and Anna Fiust
- Subjects
0106 biological sciences ,0301 basic medicine ,de-acclimation ,Acclimatization ,01 natural sciences ,Catalysis ,Article ,Inorganic Chemistry ,lcsh:Chemistry ,03 medical and health sciences ,Gene Expression Regulation, Plant ,Gene expression ,Cold acclimation ,Cultivar ,Physical and Theoretical Chemistry ,freezing tolerance ,barley ,climate change ,RNAseq ,gene expression ,oxidoreductase ,Molecular Biology ,Gene ,lcsh:QH301-705.5 ,Spectroscopy ,Genetic Association Studies ,biology ,Gene Expression Profiling ,Organic Chemistry ,RNA ,Computational Biology ,Hordeum ,General Medicine ,Herbaceous plant ,Enzyme assay ,Computer Science Applications ,Cold Temperature ,Horticulture ,030104 developmental biology ,Gene Ontology ,lcsh:Biology (General) ,lcsh:QD1-999 ,biology.protein ,Seasons ,Transcriptome ,010606 plant biology & botany - Abstract
Mechanisms involved in the de-acclimation of herbaceous plants caused by warm periods during winter are poorly understood. This study identifies the genes associated with this mechanism in winter barley. Seedlings of eight accessions (four tolerant and four susceptible to de-acclimation cultivars and advanced breeding lines) were cold acclimated for three weeks and de-acclimated at 12 °C/5 °C (day/night) for one week. We performed differential expression analysis using RNA sequencing. In addition, reverse-transcription quantitative real-time PCR and enzyme activity analyses were used to investigate changes in the expression of selected genes. The number of transcripts with accumulation level changed in opposite directions during acclimation and de-acclimation was much lower than the number of transcripts with level changed exclusively during one of these processes. The de-acclimation-susceptible accessions showed changes in the expression of a higher number of functionally diverse genes during de-acclimation. Transcripts associated with stress response, especially oxidoreductases, were the most abundant in this group. The results provide novel evidence for the distinct molecular regulation of cold acclimation and de-acclimation. Upregulation of genes controlling developmental changes, typical for spring de-acclimation, was not observed during mid-winter de-acclimation. Mid-winter de-acclimation seems to be perceived as an opportunity to regenerate after stress. Unfortunately, it is competitive to remain in the cold-acclimated state. This study shows that the response to mid-winter de-acclimation is far more expansive in de-acclimation-susceptible cultivars, suggesting that a reduced response to the rising temperature is crucial for de-acclimation tolerance.
- Published
- 2021
21. Barley ABI5 (Abscisic Acid INSENSITIVE 5) Is Involved in Abscisic Acid-Dependent Drought Response
- Author
-
Marzena Kurowska, Iwona Szarejko, Anna Collin, and Agata Daszkowska-Golec
- Subjects
0106 biological sciences ,0301 basic medicine ,TILLING ,Mutant ,ABI5 ,Plant Science ,Biology ,lcsh:Plant culture ,01 natural sciences ,Transcriptome ,abscisic acid ,03 medical and health sciences ,chemistry.chemical_compound ,transcriptomics ,stress ,lcsh:SB1-1110 ,Transcription factor ,Abscisic acid ,Gene ,Original Research ,Hordeum vulgare ,water deficit ,fungi ,food and beverages ,barley ,Phenotype ,Cell biology ,030104 developmental biology ,chemistry ,monocots ,010606 plant biology & botany - Abstract
ABA INSENSITIVE 5 (ABI5) is a basic leucine zipper (bZIP) transcription factor which acts in the abscisic acid (ABA) network and is activated in response to abiotic stresses. However, the precise role of barley (Hordeum vulgare) ABI5 in ABA signaling and its function under stress remains elusive. Here, we show that HvABI5 is involved in ABA-dependent regulation of barley response to drought stress. We identified barley TILLING mutants carrying different alleles in the HvABI5 gene and we studied in detail the physiological and molecular response to drought and ABA for one of them. The hvabi5.d mutant, carrying G1751A transition, was insensitive to ABA during seed germination, yet it showed the ability to store more water than its parent cv. "Sebastian" (WT) in response to drought stress. The drought-tolerant phenotype of hvabi5.d was associated with better membrane protection, higher flavonoid content, and faster stomatal closure in the mutant under stress compared to the WT. The microarray transcriptome analysis revealed up-regulation of genes associated with cell protection mechanisms in the mutant. Furthermore, HvABI5 target genes: HVA1 and HVA22 showed higher activity after drought, which may imply better adaptation of hvabi5.d to stress. On the other hand, chlorophyll content in hvabi5.d was lower than in WT, which was associated with decreased photosynthesis efficiency observed in the mutant after drought treatment. To verify that HvABI5 acts in the ABA-dependent manner we analyzed expression of selected genes related to ABA pathway in hvabi5.d and its WT parent after drought and ABA treatments. The expression of key genes involved in ABA metabolism and signaling differed in the mutant and the WT under stress. Drought-induced increase of expression of HvNCED1, HvBG8, HvSnRK2.1, and HvPP2C4 genes was 2-20 times higher in hvabi5.d compared to "Sebastian". We also observed a faster stomatal closure in hvabi5.d and much higher induction of HvNCED1 and HvSnRK2.1 genes after ABA treatment. Together, these findings demonstrate that HvABI5 plays a role in regulation of drought response in barley and suggest that HvABI5 might be engaged in the fine tuning of ABA signaling by a feedback regulation between biosynthetic and signaling events. In addition, they point to different mechanisms of HvABI5 action in regulating drought response and seed germination in barley.
- Published
- 2020
- Full Text
- View/download PDF
22. Methyl Jasmonate Affects Photosynthesis Efficiency, Expression of
- Author
-
Marzena Małgorzata, Kurowska, Agata, Daszkowska-Golec, Monika, Gajecka, Paulina, Kościelniak, Wojciech, Bierza, and Iwona, Szarejko
- Subjects
gene expression analysis ,Nitrogen ,Gene Expression Profiling ,HvMYC2 ,Membrane Proteins ,photosynthesis efficiency ,barley ,Hordeum ,Cyclopentanes ,Acetates ,methyl jasmonate ,Article ,jasmonate ,Oxygen-Evolving Complex ,tonoplast intrinsic proteins ,Plant Growth Regulators ,Gene Expression Regulation, Plant ,Seeds ,Oxylipins ,aquaporins ,Photosynthesis ,Promoter Regions, Genetic ,Plant Proteins ,nitrogen content - Abstract
Jasmonates modulate many growth and developmental processes and act as stress hormones that play an important role in plant tolerance to biotic and abiotic stresses. Therefore, there is a need to identify the genes that are regulated through the jasmonate signalling pathway. Aquaporins, and among them the Tonoplast Intrinsic Proteins (TIPs), form the channels in cell membranes that are responsible for the precise regulation of the movement of water and other substrates between cell compartments. We identified the cis-regulatory motifs for the methyl jasmonate (MeJA)-induced genes in the promoter regions of all the HvTIP genes, which are active in barley seedlings, and thus we hypothesised that the HvTIP expression could be a response to jasmonate signalling. In the presented study, we determined the effect of methyl jasmonate on the growth parameters and photosynthesis efficiency of barley seedlings that had been exposed to different doses of MeJA (15–1000 µM × 120 h) in a hydroponic solution. All of the applied MeJA concentrations caused a significant reduction of barley seedling growth, which was most evident in the length of the first leaf sheath and dry leaf weight. The observed decrease of the PSII parameters after the exposure to high doses of MeJA (500 µM or higher) was associated with the downregulation of HvPsbR gene encoding one of the extrinsic proteins of the Oxygen Evolving Complex. The reduced expression of HvPsbR might lead to the impairment of the OEC action, manifested by the occurrence of the K-band in an analysis of fluorescence kinetics after MeJA treatment as well as reduced photosynthesis efficiency. Furthermore, methyl jasmonate treatment caused a decrease in the nitrogen content in barley leaves, which was associated with an increased expression the four tonoplast aquaporin genes (HvTIP1;2, HvTIP2;2, HvTIP4;1 and HvTIP4;2) predicted to transport the nitrogen compounds from the vacuole to the cytosol. The upregulation of the nitrogen-transporting HvTIPs might suggest their involvement in the vacuolar unloading of ammonia and urea, which both could be remobilised when the nitrogen content in the leaves decreases. Our research provides tips on physiological role of the individual TIP subfamily members of aquaporins under methyl jasmonate action.
- Published
- 2020
23. Cuticular waxes-A shield of barley mutant in CBP20 (Cap-Binding Protein 20) gene when struggling with drought stress
- Author
-
Krzysztof Sitko, Jagna Karcz, Agata Daszkowska-Golec, Tomasz Płociniczak, and Iwona Szarejko
- Subjects
0106 biological sciences ,0301 basic medicine ,Mutant ,Context (language use) ,Plant Science ,Biology ,01 natural sciences ,Epicuticular wax ,Plant Epidermis ,03 medical and health sciences ,Gene Expression Regulation, Plant ,Stress, Physiological ,Arabidopsis ,Botany ,Gene expression ,Genetics ,Plant Proteins ,Wax ,Epidermis (botany) ,Dehydration ,Binding protein ,fungi ,food and beverages ,RNA-Binding Proteins ,Water ,Hordeum ,General Medicine ,biology.organism_classification ,030104 developmental biology ,RNA Cap-Binding Proteins ,visual_art ,Mutation ,visual_art.visual_art_medium ,Agronomy and Crop Science ,010606 plant biology & botany ,Transcription Factors - Abstract
CBP20 (Cap-Binding Protein 20) encodes a small subunit of nuclear Cap-Binding Complex (nCBC) that together with CBP80 binds mRNA cap. We previously described barley hvcbp20.ab mutant that demonstrated higher leaf water content and faster stomatal closure than the WT after drought stress. Hence, we presumed that the better water-saving mechanism in hvcbp20.ab may result from the lower permeability of epidermis that together with stomata action limit the water evaporation under drought stress. We asked whether hvcbp20.ab exhibited any differences in wax load on the leaf surface when subjected to drought in comparison to WT cv. ‘Sebastian’. To address this question, we investigated epicuticular wax structure and chemical composition under drought stress in hvcbp20.ab mutant and its WT. We showed that hvcbp20.ab mutant exhibited the increased deposition of cuticular wax. Moreover, our gene expression results suggested a role of HvCBP20 as a negative regulator of both, the biosynthesis of waxes at the level of alkane-forming, and waxes transportation. Interestingly, we also observed increased wax deposition in Arabidopsis cbp20 mutant exposed to drought, which allowed us to describe the CBP20-regulated epicuticular wax accumulation under drought stress in a wider evolutionarily context.
- Published
- 2020
24. Degrade or Silence? - RNA Turnover Takes Control of Epicuticular Wax Synthesis
- Author
-
Agata Daszkowska-Golec
- Subjects
0106 biological sciences ,0301 basic medicine ,Research Report ,Wax ,Exosome Multienzyme Ribonuclease Complex ,Exosome complex ,Arabidopsis Proteins ,Arabidopsis ,RNA ,Plant Science ,Rna degradation ,Biology ,01 natural sciences ,Epicuticular wax ,03 medical and health sciences ,030104 developmental biology ,Biochemistry ,visual_art ,Waxes ,visual_art.visual_art_medium ,010606 plant biology & botany ,Wax biosynthesis - Abstract
The aerial surfaces of land plants have a protective layer of cuticular wax. Alkanes are common components of these waxes, and their abundance is affected by a range of stresses. The CER16 protein has been implicated in alkane biosynthesis in the cuticular wax of Arabidopsis (Arabidopsis thaliana). Here, we identified two new mutant alleles of CER16 in Arabidopsis resulting in production of less wax with dramatically fewer alkanes than the wild type. Map-based cloning with genetic analysis revealed that the cer16 phenotype was caused by complete loss of AT5G44150, encoding a protein with no known domains or motifs. Comparative transcriptomic analysis revealed that transcripts of CER3, previously shown to play a principal role in alkane production, were markedly reduced in the cer16 mutants. To define the relationship between CER3 and CER16, we transformed the full CER3 gene into a cer16 mutant. Transgenic CER3 expression was silenced, and levels of small interfering RNAs targeting CER3 were significantly increased. Mutating two major components of the RNA-silencing machinery in a cer16 genetic background restored CER3 transcript levels to wild-type levels, with the stems restored to wild-type glaucousness. We suggest that CER16 deficiency induces post-transcriptional gene silencing of both endogenous and exogenous expression of CER3.
- Published
- 2020
25. Prompt chlorophyll fluorescence as a tool for crop phenotyping: an example of barley landraces exposed to various abiotic stress factors
- Author
-
I. A. Samborska, Marek Živčák, Ramin Lotfi, Agata Daszkowska-Golec, P. Stypiński, Hazem M. Kalaji, Magdalena D. Cetner, Anshu Rastogi, Khalid Y. Alsharafa, Krzysztof Sitko, and Marian Brestic
- Subjects
0106 biological sciences ,0301 basic medicine ,JIP test ,Photosystem II ,Physiology ,Abiotic stress ,photosystem II ,Plant physiology ,Plant Science ,Photosynthetic efficiency ,Biology ,chlorophyll a fluorescence ,Photosynthesis ,Stress factor ,01 natural sciences ,Crop ,03 medical and health sciences ,Horticulture ,030104 developmental biology ,Chlorophyll fluorescence ,010606 plant biology & botany - Abstract
The study examined photosynthetic efficiency of two barley landraces (cvs. Arabi Abiad and Arabi Aswad) through a prompt fluorescence technique under influence of 14 different abiotic stress factors. The difference in the behavior of photosynthetic parameters under the same stress factor in–between cv. Arabi Abiad and cv. Arabi Aswad indicated different mechanisms of tolerance and strategies for the conversion of light energy into chemical energy for both the landraces. This study confirmed the suitability of some chlorophyll fluorescence parameters as reliable biomarkers for screening the plants at the level of photosynthetic apparatus.
- Published
- 2018
- Full Text
- View/download PDF
26. Mutation in barley ERA1 (Enhanced Response to ABA1) gene confers better photosynthesis efficiency in response to drought as revealed by transcriptomic and physiological analysis
- Author
-
Agata Daszkowska-Golec, Marzena Kurowska, Krzysztof Sitko, Michal Slota, Anna Skubacz, and Iwona Szarejko
- Subjects
0106 biological sciences ,0301 basic medicine ,TILLING ,Farnesyltransferase ,fungi ,Mutant ,Drought tolerance ,food and beverages ,Plant Science ,Biology ,biology.organism_classification ,01 natural sciences ,Cell biology ,Chloroplast ,03 medical and health sciences ,030104 developmental biology ,Arabidopsis ,biology.protein ,Agronomy and Crop Science ,Gene ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany ,Photosystem - Abstract
Farnesylation is a post-translational modification that promotes the interaction between the modified signaling protein and membrane lipids and/or other proteins. Farnesyltransferase is the crucial enzyme involved in this process. Strikingly, plant mutants in the ERA1 (Enhanced response to ABA 1) gene, encoding β-subunit of farnesyltransferase, exhibited ABA-hypersensitivity during seed germination and drought tolerance in several species including Arabidopsis, wheat and soybean. However, the mechanism of ERA1 action has not been resolved yet. Here, we present the potential regulatory role of ERA1 in the drought signaling network in barley. With the aim of decoding the role of the ERA1 gene, we developed a unique barley mutant using TILLING analysis. Mutation in HvERA1 confers semi-dwarf phenotype, ABA-sensitivity during seed germination and drought tolerance. Our transcriptomic analysis suggested a role of HvERA1 in regulation of the crosstalk between ABA and ethylene at the onset of drought. Furthermore, analysis of hvera1.b response to prolonged drought stress linked HvERA1 to the metabolism of galactolipids, that build the chloroplast membranes. It might results in the protection of hvera1.b photosystem and thus, in its better photosynthesis performance under water stress. Together, these results indicate the possible mechanism of the primary cause of the observed alterations in the hvera1.b mutant.
- Published
- 2018
- Full Text
- View/download PDF
27. Emerging Roles of the Nuclear Cap-Binding Complex in Abiotic Stress Responses
- Author
-
Agata Daszkowska-Golec
- Subjects
0301 basic medicine ,RNA metabolism ,Cap binding complex ,Physiology ,Abiotic stress ,fungi ,food and beverages ,RNA ,Plant Science ,Plants ,Biology ,Models, Biological ,Cell biology ,Fight-or-flight response ,03 medical and health sciences ,030104 developmental biology ,RNA, Plant ,Stress, Physiological ,parasitic diseases ,Genetics ,Humans ,Plant metabolism ,Nuclear Cap-Binding Protein Complex ,UPDATES - FOCUS ISSUE ,Abscisic Acid - Abstract
Plant nuclear CBC consisted of two subunits (CBP20 and CBP80) is involved in both conserved processes related to RNA metabolism and simultaneously in extremely dynamic plant stress response.
- Published
- 2017
- Full Text
- View/download PDF
28. Methyl Jasmonate Affects Photosynthesis Efficiency, Expression of HvTIP Genes and Nitrogen Homeostasis in Barley
- Author
-
Paulina Kościelniak, Marzena Kurowska, Wojciech Bierza, Monika Gajecka, Agata Daszkowska-Golec, and Iwona Szarejko
- Subjects
0106 biological sciences ,0301 basic medicine ,Aquaporin ,photosynthesis efficiency ,Vacuole ,Photosynthetic efficiency ,Oxygen-evolving complex ,01 natural sciences ,Catalysis ,Oxygen-Evolving Complex ,lcsh:Chemistry ,Inorganic Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,tonoplast intrinsic proteins ,Gene expression ,Jasmonate ,aquaporins ,Physical and Theoretical Chemistry ,lcsh:QH301-705.5 ,Molecular Biology ,Spectroscopy ,Methyl jasmonate ,photosynthesis e ciency ,gene expression analysis ,Chemistry ,HvMYC2 ,Organic Chemistry ,barley ,General Medicine ,methyl jasmonate ,jasmonate ,Computer Science Applications ,Cell biology ,Cytosol ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 ,010606 plant biology & botany ,nitrogen content - Abstract
Jasmonates modulate many growth and developmental processes and act as stress hormones that play an important role in plant tolerance to biotic and abiotic stresses. Therefore, there is a need to identify the genes that are regulated through the jasmonate signalling pathway. Aquaporins, and among them the Tonoplast Intrinsic Proteins (TIPs), form the channels in cell membranes that are responsible for the precise regulation of the movement of water and other substrates between cell compartments. We identified the cis-regulatory motifs for the methyl jasmonate (MeJA)-induced genes in the promoter regions of all the HvTIP genes, which are active in barley seedlings, and thus we hypothesised that the HvTIP expression could be a response to jasmonate signalling. In the presented study, we determined the effect of methyl jasmonate on the growth parameters and photosynthesis efficiency of barley seedlings that had been exposed to different doses of MeJA (15&ndash, 1000 µ, M ×, 120 h) in a hydroponic solution. All of the applied MeJA concentrations caused a significant reduction of barley seedling growth, which was most evident in the length of the first leaf sheath and dry leaf weight. The observed decrease of the PSII parameters after the exposure to high doses of MeJA (500 µ, M or higher) was associated with the downregulation of HvPsbR gene encoding one of the extrinsic proteins of the Oxygen Evolving Complex. The reduced expression of HvPsbR might lead to the impairment of the OEC action, manifested by the occurrence of the K-band in an analysis of fluorescence kinetics after MeJA treatment as well as reduced photosynthesis efficiency. Furthermore, methyl jasmonate treatment caused a decrease in the nitrogen content in barley leaves, which was associated with an increased expression the four tonoplast aquaporin genes (HvTIP1, 2, HvTIP2, 2, HvTIP4, 1 and HvTIP4, 2) predicted to transport the nitrogen compounds from the vacuole to the cytosol. The upregulation of the nitrogen-transporting HvTIPs might suggest their involvement in the vacuolar unloading of ammonia and urea, which both could be remobilised when the nitrogen content in the leaves decreases. Our research provides tips on physiological role of the individual TIP subfamily members of aquaporins under methyl jasmonate action.
- Published
- 2020
29. Influence of short-term macronutrient deprivation in maize on photosynthetic characteristics, transpiration and pigment content
- Author
-
Hazem M. Kalaji, Michał Szopiński, Eugeniusz Małkowski, Agata Daszkowska-Golec, Marta Pogrzeba, Szymon Rusinowski, Paulina Zieleźnik-Rusinowska, Krzysztof Sitko, and Żaneta Gieroń
- Subjects
0106 biological sciences ,0301 basic medicine ,Chlorophyll ,Stomatal conductance ,Photosystem II ,Science ,Plant physiology ,Photosynthesis ,maize ,01 natural sciences ,Zea mays ,Article ,Phosphorus metabolism ,transpiration ,deprivation ,03 medical and health sciences ,chemistry.chemical_compound ,Pigment ,pigment ,photosynthetic characteristics ,Magnesium ,Transpiration ,Multidisciplinary ,food and beverages ,Phosphorus ,Plant Transpiration ,Nutrients ,Horticulture ,030104 developmental biology ,chemistry ,Anthocyanin ,visual_art ,Plant stress responses ,visual_art.visual_art_medium ,Potassium ,Medicine ,Calcium ,010606 plant biology & botany - Abstract
The aim of the research was to compare the impact of short-term deprivation of selected macronutrients (Ca, K, Mg and P) on the photosynthetic characteristics, transpiration and pigment content in maize. The strongest inhibition of photosynthesis was caused by a deprivation of Mg, which was visible as a decrease in the photosynthetic and transpiration rates, stomatal conductance, photosystem II (PSII) performance, chlorophyll and flavonol content with a simultaneously increased content of anthocyanins. In the K-deprived plants, a decrease in the photosynthetic rate was observed. However, the transpiration rate and stomatal conductance did not differ significantly compared with the control. In the K-deprived plants, a decrease in chlorophyll and an increase in the anthocyanin content were also observed. We showed that Ca starvation resulted in a decrease in the photosynthetic and transpiration rates, stomatal conductance and PSII performance, while the pigment content was not significantly different compared with the control. In the case of P-deprived plants, we observed a decrease in the photosynthetic and transpiration rates. Interestingly, the inhibition of stomatal conductance was the strongest in the P-deprived plants compared with all of the investigated elements. However, the performance of PSII was not significantly affected by P starvation compared with the control. Our results present for the first time a comprehensive analysis of the effect of short-term macronutrient deprivation on photosynthesis and transpiration in maize plants.
- Published
- 2019
30. Genetic and Physiological Dissection of Photosynthesis in Barley Exposed to Drought Stress
- Author
-
Anna Collin, Agnieszka Janiak, Agata Daszkowska-Golec, Krzysztof Sitko, Iwona Szarejko, and Hazem M. Kalaji
- Subjects
0106 biological sciences ,0301 basic medicine ,Candidate gene ,Photosynthetic efficiency ,01 natural sciences ,Gene Expression Regulation, Plant ,JIP-test ,Promoter Regions, Genetic ,Spectroscopy ,Photosystem ,Dehydration ,drought stress ,High-Throughput Nucleotide Sequencing ,food and beverages ,General Medicine ,Droughts ,Computer Science Applications ,abiotic stress ,Genotype ,Drought tolerance ,Biology ,Genes, Plant ,Photosynthesis ,Fluorescence ,Article ,Catalysis ,Electron Transport ,Inorganic Chemistry ,03 medical and health sciences ,Stress, Physiological ,Physical and Theoretical Chemistry ,Molecular Biology ,Gene ,photosynthesis ,Abiotic stress ,business.industry ,Chlorophyll A ,Crop yield ,Organic Chemistry ,barley ,Hordeum ,Biotechnology ,Oxygen ,030104 developmental biology ,Seedlings ,business ,transcriptome ,Abscisic Acid ,Transcription Factors ,010606 plant biology & botany - Abstract
Balanced photosynthesis under drought is essential for better survival and for agricultural benefits in terms of biomass and yield. Given the current attempts to improve the photosynthetic efficiency for greater crop yield, the explanation of the genetic basis of that process, together with the phenotypic analysis, is significant in terms of both basic studies and potential agricultural application. Therefore, the main objective of this study was to uncover the molecular basis of the photosynthesis process under drought stress in barley. To address that goal, we conducted transcriptomic examination together with detailed photosynthesis analysis using the JIP-test. Using this approach, we indicated that photosynthesis is a process that is very early affected in barley seedlings treated with severe drought stress. Rather than focusing on individual genes, our strategy was pointed to the identification of groups of genes with similar expression patterns. As such, we identified and annotated almost 150 barley genes as crucial core-components of photosystems, electron transport components, and Calvin cycle enzymes. Moreover, we designated 17 possible regulatory interactions between photosynthesis-related genes and transcription factors in barley. Summarizing, our results provide a list of candidate genes for future genetic research and improvement of barley drought tolerance by targeting photosynthesis.
- Published
- 2019
31. Methods for the Simple and Reliable Assessment of Barley Sensitivity to Abiotic Stresses During Early Development
- Author
-
Dorota Swiergolik, Anna Skubacz, Marzena Kurowska, Agata Daszkowska-Golec, Michal Slota, and Iwona Szarejko
- Subjects
0106 biological sciences ,0301 basic medicine ,Abiotic component ,Osmotic shock ,biology ,food and beverages ,Mutagenesis (molecular biology technique) ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,Horticulture ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Germination ,Seedling ,Arabidopsis ,Cultivar ,Abscisic acid ,010606 plant biology & botany - Abstract
Physiological assays that facilitate screening for various types of responses to abiotic stresses are well established for model plants such as Arabidopsis; however, there is a need to optimize similar tests for cereal crops, including barley. We have developed a set of stress assays to characterize the response of different barley lines during two stages of development-seed germination and seedling growth. The assays presented, including the response to osmotic, salt, oxidative stresses, and exogenously applied abscisic acid, can be used for forward screening of populations after mutagenesis as well as for phenotyping of already isolated mutants, cultivars, or breeding lines. As well as protocols for stress treatments, we also provide methods for plant stress response evaluation, such as chlorophyll a fluorescence (ChlF) and image analysis.
- Published
- 2018
- Full Text
- View/download PDF
32. Transcriptome analysis reveals the role of the root hairs as environmental sensors to maintain plant functions under water-deficiency conditions
- Author
-
Urszula Nowakowska, Iwona Szarejko, Karolina Chwiałkowska, Miroslaw Kwasniewski, Agata Daszkowska-Golec, Agnieszka Janiak, and Gaurav Sablok
- Subjects
0106 biological sciences ,0301 basic medicine ,DNA, Plant ,Photosystem II ,Physiology ,Mutant ,drought ,Plant Science ,Root system ,Root hair ,Biology ,water stress ,Plant Roots ,01 natural sciences ,Transcriptome ,03 medical and health sciences ,Barley ,Botany ,Gene expression ,Abiotic component ,Gene Expression Profiling ,Hordeum ,Sequence Analysis, DNA ,6. Clean water ,Droughts ,Light intensity ,030104 developmental biology ,gene expression ,environmental sensor ,Research Paper ,root hair ,010606 plant biology & botany - Abstract
Highlight The root system is the first plant organ that senses a water deficit. Here we have shown evidence that root hairs play a role as sensors of environmental conditions during water stress., An important part of the root system is the root hairs, which play a role in mineral and water uptake. Here, we present an analysis of the transcriptomic response to water deficiency of the wild-type (WT) barley cultivar ‘Karat’ and its root-hairless mutant rhl1.a. A comparison of the transcriptional changes induced by water stress resulted in the identification of genes whose expression was specifically affected in each genotype. At the onset of water stress, more genes were modulated by water shortage in the roots of the WT plants than in the roots of rhl1.a. The roots of the WT plants, but not of rhl1.a, specifically responded with the induction of genes that are related to the abscisic acid biosynthesis, stomatal closure, and cell wall biogenesis, thus indicating the specific activation of processes that are related to water-stress signalling and protection. On the other hand, the processes involved in the further response to abiotic stimuli, including hydrogen peroxide, heat, and high light intensity, were specifically up-regulated in the leaves of rhl1.a. An extended period of severe stress caused more drastic transcriptome changes in the roots and leaves of the rhl1.a mutant than in those of the WT. These results are in agreement with the much stronger damage to photosystem II in the rhl1.a mutant than in its parent cultivar after 10 d of water stress. Taking into account the putative stress sensing and signalling features of the root hair transcriptome, we discuss the role of root hairs as sensors of environmental conditions.
- Published
- 2015
- Full Text
- View/download PDF
33. Seed Dormancy: The Complex Process Regulated by Abscisic Acid, Gibberellins, and Other Phytohormones that Makes Seed Germination Work
- Author
-
Agata Daszkowska-Golec and Anna Skubacz
- Subjects
0106 biological sciences ,0301 basic medicine ,fungi ,Seed dormancy ,food and beverages ,Germination ,Biology ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Horticulture ,Abscisic acid ,030104 developmental biology ,chemistry ,Scientific method ,Botany ,Gibberellin ,010606 plant biology & botany - Abstract
Seed dormancy is one of the most important adaptive mechanisms in plants, which protects seeds from precocious germination in the presence of the inappropriate conditions for growth continuation. Numerous environmental and molecular signals regulate seed dormancy. Maintenance or release of seed dormancy is dependent on light, temperature, and water availability. Precise response of seeds to environmental factors is mediated by different phytohormonal pathways. ABA is considered as a main phytohormone regulating seed dormancy induction and maintenance. ABA‐ and GA‐responsive components, ensure crosstalk between the GA and ABA pathways and enable seed response adequate to the environment. Phytohormonal regulation mechanism of seed dormancy is similar in dicot and monocot plants. Recently, it is suggested that other phytohormones, such as auxin, jasmonates, brassinosteroids, and ethylene, also take part in seed dormancy regulation. Auxin regulators, enhance ABA action and positively influence seed dormancy. However, jasmonates, brassinosteroids, and ethylene reduce seed dormancy level. Here, we describe recent advances in understanding the complex process of seed dormancy regulated by many phytohormonal pathways and their components. Seed dormancy studies can help obtain crop varieties producing seeds with the most desirable timing of germination.
- Published
- 2017
34. Arabidopsis Seed Germination Under Abiotic Stress as a Concert of Action of Phytohormones
- Author
-
Agata Daszkowska-Golec
- Subjects
Arabidopsis ,Germination ,Biology ,Proteomics ,Models, Biological ,Biochemistry ,Epigenesis, Genetic ,Plant Growth Regulators ,Stress, Physiological ,Botany ,Genetics ,Molecular Biology ,Epigenesis ,Abiotic component ,Abiotic stress ,Computational Biology ,Water ,food and beverages ,biology.organism_classification ,Crosstalk (biology) ,Mutation ,Seeds ,Molecular Medicine ,Functional genomics ,Signal Transduction ,Biotechnology - Abstract
Different abiotic stresses inhibit or delay the development and growth of plants. The most crucial step of plant life cycle, which ensures the survival of the next generation, is seed germination. Plants are sessile organisms that need to integrate internal and external signals in order to produce the correct response. Plants have evolved mechanisms that enable seed germination to be arrested under stress conditions and then resumed when conditions are favorable. The complexity of this mechanism was explored in Arabidopsis thaliana using mutants that had defects in their phytohormone metabolism and signaling pathways. These analyses led to the identification of many important components that are involved in these pathways and shed light on the complex crosstalk between phytohormones under abiotic stress. Combined "omics" techniques such as functional genomics, transcriptomics, and proteomics with the support of bioinformatics, physiology, and molecular genetics have greatly expanded the present understanding of the seed germination process. This minireview focuses on the current status of knowledge about seed germination under abiotic stress with a particular emphasis on genetic interactions, hormonal balance, and epigenetic regulation that occur in Arabidopsis thaliana during this process.
- Published
- 2011
- Full Text
- View/download PDF
35. The role and regulation of ABI5 (ABA-Insensitive 5) in plant development, abiotic stress responses and phytohormone crosstalk
- Author
-
Iwona Szarejko, Anna Skubacz, and Agata Daszkowska-Golec
- Subjects
0106 biological sciences ,0301 basic medicine ,Jasmonates ,Response element ,ABI5 ,SUMO protein ,Plant Science ,Review ,Biology ,lcsh:Plant culture ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Abscisic acid ,Auxin ,Brassinosteroids ,Brassinosteroid ,lcsh:SB1-1110 ,Jasmonate ,Transcription factor ,Phytohormone crosstalk ,chemistry.chemical_classification ,Abiotic stress ,fungi ,Abiotic stress response ,food and beverages ,030104 developmental biology ,chemistry ,Biochemistry ,Gibberellin acid ,Posttranslational modification ,010606 plant biology & botany - Abstract
ABA Insensitive 5 (ABI5) is a basic leucine zipper (bZIP) transcription factor that plays a key role in the regulation of seed germination and early seedling growth in the presence of ABA and abiotic stresses. ABI5 functions in the core ABA signaling, which is composed of PYR/PYL/RCAR receptors, PP2C phosphatases and SnRK2 kinases, through the regulation of the expression of genes that contain the ABSCISIC ACID RESPONSE ELEMENT (ABRE) motif within their promoter region. The regulated targets include stress adaptation genes, e.g. LEA proteins. However, the expression and activation of ABI5 is not only dependent on the core ABA signaling. Many transcription factors such as ABI3, ABI4, MYB7 and WRKYs play either a positive or a negative role in the regulation of ABI5 expression. Additionally, the stability and activity of ABI5 are also regulated by other proteins through post-translational modifications such as phosphorylation, ubiquitination, sumoylation and S-nitrosylation. Moreover, ABI5 also acts as an ABA and other phytohormone signaling integrator. Components of auxin, cytokinin, gibberellic acid, jasmonate and brassinosteroid signaling and metabolism pathways were shown to take part in ABI5 regulation and/or to be regulated by ABI5. Monocot orthologues of AtABI5 have been identified. Although their role in the molecular and physiological adaptations during abiotic stress have been elucidated, knowledge about their detailed action still remains elusive. Here, we describe the recent advances in understanding the action of ABI5 in early developmental processes and the adaptation of plants to unfavorable environmental conditions. We also focus on ABI5 relation to other phytohormones in the abiotic stress response of plants.
- Published
- 2016
36. The Role of Abscisic Acid in Drought Stress: How ABA Helps Plants to Cope with Drought Stress
- Author
-
Agata Daszkowska-Golec
- Subjects
0106 biological sciences ,0301 basic medicine ,Drought stress ,fungi ,Drought tolerance ,food and beverages ,Biology ,Plant cell ,01 natural sciences ,Cell biology ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,chemistry ,Shoot ,Post-translational regulation ,Abscisic acid ,Transcription factor ,010606 plant biology & botany ,Hormone - Abstract
The exploration of plant response to drought stress is a key to understanding the mechanisms of the drought signaling network and further implementing the knowledge in breeding programs of crops. Plant hormones are crucial factors in transducing the stress signal and the main player among them is abscisic acid (ABA). ABA controls plants’ stress response at many layers of regulation. These include (1) transcriptional response including interactions of core transcription factors that are regulated by ABA and other plant hormones, and (2) regulation of ABA metabolism and transport itself, with posttranscriptional and posttranslational regulation which still seems to be a hidden and not fully recognized part of stress signaling. The efficient integration and coordination of ABA metabolism, transport, and regulation of core signaling elements are pivotal for maintaining tissue and cell-type-specific hormone concentration and thus signaling efficiency, to achieve the proper growth and developmental responses. Among lifecycle processes controlled by ABA are: inhibition of germination, restriction of shoot and root growth, and stomatal closure. Here, we describe recent advances in decoding the ABA signaling message transmitted through plant cells under drought stress that builds drought tolerance.
- Published
- 2016
- Full Text
- View/download PDF
37. Open or Close the Gate – Stomata Action Under the Control of Phytohormones in Drought Stress Conditions
- Author
-
Agata Daszkowska-Golec and Iwona Szarejko
- Subjects
abiotic stress ,Cellular differentiation ,Turgor pressure ,stomata ,guard cells ,Plant Science ,Review Article ,Biology ,lcsh:Plant culture ,crosstalk ,chemistry.chemical_compound ,Guard cell ,Botany ,lcsh:SB1-1110 ,Abscisic acid ,Abiotic stress ,Jasmonic acid ,fungi ,jasmonic acid ,food and beverages ,Cell biology ,phytohormones ,Crosstalk (biology) ,chemistry ,ABA ,Signal transduction - Abstract
Two highly specialized cells, the guard cells that surround the stomatal pore, are able to integrate environmental and endogenous signals in order to control the stomatal aperture and thereby the gas exchange. The uptake of CO2 is associated with a loss of water by leaves. Control of the size of the stomatal aperture optimizes the efficiency of water use through dynamic changes in the turgor of the guard cells. The opening and closing of stomata is regulated by the integration of environmental signals and endogenous hormonal stimuli. The various different factors to which the guard cells respond translates into the complexity of the network of signaling pathways that control stomatal movements. The perception of an abiotic stress triggers the activation of signal transduction cascades that interact with or are activated by phytohormones. Among these, abscisic acid (ABA), is the best-known stress hormone that closes the stomata, although other phytohormones, such as jasmonic acid, brassinosteroids, cytokinins, or ethylene are also involved in the stomatal response to stresses. As a part of the drought response, ABA may interact with jasmonic acid and nitric oxide in order to stimulate stomatal closure. In addition, the regulation of gene expression in response to ABA involves genes that are related to ethylene, cytokinins, and auxin signaling. In this paper, recent findings on phytohormone crosstalk, changes in signaling pathways including the expression of specific genes and their impact on modulating stress response through the closing or opening of stomata, together with the highlights of gaps that need to be elucidated in the signaling network of stomatal regulation, are reviewed.
- Published
- 2013
38. Towards the identification of new genes involved in ABA-dependent abiotic stresses using Arabidopsis suppressor mutants of abh1 hypersensitivity to ABA during seed germination
- Author
-
Edyta Chorazy, Miroslaw Maluszynski, Iwona Szarejko, and Agata Daszkowska-Golec
- Subjects
abiotic stress ,suppressor mutant ,Mutant ,Arabidopsis ,Mutagenesis (molecular biology technique) ,Germination ,Catalysis ,Article ,law.invention ,lcsh:Chemistry ,Inorganic Chemistry ,abscisic acid ,chemistry.chemical_compound ,law ,Stress, Physiological ,Botany ,Physical and Theoretical Chemistry ,lcsh:QH301-705.5 ,Molecular Biology ,Abscisic acid ,Spectroscopy ,Suppressor mutation ,Genetics ,biology ,Abiotic stress ,Arabidopsis Proteins ,map-based cloning ,Organic Chemistry ,fungi ,food and beverages ,General Medicine ,biology.organism_classification ,Computer Science Applications ,lcsh:Biology (General) ,lcsh:QD1-999 ,chemistry ,Seedling ,RNA Cap-Binding Proteins ,Mutation ,Seeds ,Suppressor ,Signal Transduction - Abstract
Abscisic acid plays a pivotal role in the abiotic stress response in plants. Although great progress has been achieved explaining the complexity of the stress and ABA signaling cascade, there are still many questions to answer. Mutants are a valuable tool in the identification of new genes or new alleles of already known genes and in elucidating their role in signaling pathways. We applied a suppressor mutation approach in order to find new components of ABA and abiotic stress signaling in Arabidopsis. Using the abh1 (ABA hypersensitive 1) insertional mutant as a parental line for EMS mutagenesis, we selected several mutants with suppressed hypersensitivity to ABA during seed germination. Here, we present the response to ABA and a wide range of abiotic stresses during the seed germination and young seedling development of two suppressor mutants-soa2 (suppressor of abh1 hypersensitivity to ABA 2) and soa3 (suppressor of abh1 hypersensitivity to ABA 3). Generally, both mutants displayed a suppression of the hypersensitivity of abh1 to ABA, NaCl and mannitol during germination. Both mutants showed a higher level of tolerance than Columbia-0 (Col-0-the parental line of abh1) in high concentrations of glucose. Additionally, soa2 exhibited better root growth than Col-0 in the presence of high ABA concentrations. soa2 and soa3 were drought tolerant and both had about 50% fewer stomata per mm2 than the wild-type but the same number as their parental line-abh1. Taking into account that suppressor mutants had the same genetic background as their parental line-abh1, it was necessary to backcross abh1 with Landsberg erecta four times for the map-based cloning approach. Mapping populations, derived from the cross of abh1 in the Landsberg erecta background with each suppressor mutant, were created. Map based cloning in order to identify the suppressor genes is in progress.
- Published
- 2013
39. The Molecular Basis of ABA-Mediated Plant Response to Drought
- Author
-
Iwona Szarejko and Agata Daszkowska-Golec
- Subjects
Metabolomics ,biology ,Arabidopsis ,Molecular Response ,fungi ,Drought tolerance ,Botany ,food and beverages ,Plant physiology ,Cultivar ,Adaptation ,biology.organism_classification ,Functional genomics - Abstract
‘Drought stress is as complicated and difficult to plant biology as cancer is to mammalian biology’ said Jian-Kang Zhu, a molecular geneticist at the University of California, River‐ side. The capacity of a plant to turn on or turn off a series of genes that further alter plant physiology and morphology allows a plant to tolerate, escape or avoid drought stress. Many countries around the world experience drought stress in different ways but it always leads to a decreased annual yield of crops. Deciphering the basis of the molecular response to stress and the mechanism for the adaptation and acquisition of tolerance can facilitate the creation of cultivars with increased drought tolerance. Drought response is a complex mech‐ anism that has been investigated using a broad spectrum of ‘omics’ techniques, such as mo‐ lecular genetics, functional genomics, transcriptomics, proteomics and metabolomics combined with advanced phenotyping techniques. The response of plants to dehydration stress has been extensively studied in a wide range of species with particular emphasis on model plants such as Arabidopsis. Taking advantage of the knowledge already obtained from Arabidopsis and other model species, it is possible to gain insight into the stress re‐ sponse in crops such as barley or wheat.
- Published
- 2013
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.