60 results on '"Fried VA"'
Search Results
2. Teaching geriatric assessment in home visits: the family physician/geriatrician attachment.
- Author
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Tandeter H, Peleg R, Menahem S, Biderman A, and Fried VA
- Abstract
BACKGROUND: Geriatric clinical clerkships in Israel teach mostly about the hospitalized elder patient with almost no ambulatory experience. Meanwhile, primary care physicians provide most of the health care to the elderly in the community. This article describes an innovation in the curriculum of the 5th-year family medicine clerkship at the Goldman Medical School of Ben-Gurion University in Israel designed to improve the teaching of geriatrics in the ambulatory setting. DESCRIPTION: During the clerkship, family physicians perform a home visit to one of their home-ridden elderly patients with a small group of medical students. During this visit, a geriatrician from the local hospital is included to the group for teaching purposes. EVALUATION: Most students rated this experience positively as did the family physicians and geriatricians who participated in this experience. CONCLUSIONS: This liaison-attachment teaching experience allows the students to learn aspects of geriatrics that are spared during their geriatric clerkship, allows the family physician to use this opportunity as a consultation for homebound patients, and allows the tertiary care geriatrician to teach in the community. [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
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3. Zinc enhances hippocampal long-term potentiation at CA1 synapses through NR2B containing NMDA receptors.
- Author
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Sullivan JA, Zhang XL, Sullivan AP, Vose LR, Moghadam AA, Fried VA, and Stanton PK
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- Animals, CA1 Region, Hippocampal drug effects, Chelating Agents pharmacology, Excitatory Postsynaptic Potentials drug effects, Mice, Inbred C57BL, Protein Kinase Inhibitors pharmacology, Pyramidal Cells drug effects, Pyramidal Cells physiology, Receptors, N-Methyl-D-Aspartate antagonists & inhibitors, Synapses drug effects, src-Family Kinases antagonists & inhibitors, src-Family Kinases metabolism, CA1 Region, Hippocampal physiology, Long-Term Potentiation drug effects, Receptors, N-Methyl-D-Aspartate metabolism, Synapses physiology, Zinc pharmacology
- Abstract
The role of zinc (Zn2+), a modulator of N-methyl-D-aspartate (NMDA) receptors, in regulating long-term synaptic plasticity at hippocampal CA1 synapses is poorly understood. The effects of exogenous application of Zn2+ and of chelation of endogenous Zn2+ were examined on long-term potentiation (LTP) of stimulus-evoked synaptic transmission at Schaffer collateral (SCH) synapses in field CA1 of mouse hippocampal slices using whole-cell patch clamp and field recordings. Low micromolar concentrations of exogenous Zn2+ enhanced the induction of LTP, and this effect required activation of NMDA receptors containing NR2B subunits. Zn2+ elicited a selective increase in NMDA/NR2B fEPSPs, and removal of endogenous Zn2+ with high-affinity Zn2+ chelators robustly reduced the magnitude of stimulus-evoked LTP. Taken together, our data show that Zn2+ at physiological concentrations enhances activation of NMDA receptors containing NR2B subunits, and that this effect enhances the magnitude of LTP., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2018
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4. Intraventricular hemorrhage induces deposition of proteoglycans in premature rabbits, but their in vivo degradation with chondroitinase does not restore myelination, ventricle size and neurological recovery.
- Author
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Vinukonda G, Zia MT, Bhimavarapu BB, Hu F, Feinberg M, Bokhari A, Ungvari Z, Fried VA, and Ballabh P
- Subjects
- Age Factors, Animals, Animals, Newborn, Antigens genetics, Antigens metabolism, Cell Proliferation drug effects, Chondroitin ABC Lyase administration & dosage, Chondroitin Sulfate Proteoglycans genetics, Disease Models, Animal, Female, Fetus, Gestational Age, Humans, Infant, Newborn, Male, Motor Activity drug effects, Motor Activity physiology, Myelin Sheath metabolism, Nerve Tissue Proteins metabolism, Oligodendroglia metabolism, Pregnancy, Proteoglycans genetics, Proteoglycans metabolism, Rabbits, Recovery of Function drug effects, Time Factors, Cerebral Hemorrhage metabolism, Cerebral Hemorrhage pathology, Cerebral Hemorrhage physiopathology, Chondroitin Sulfate Proteoglycans metabolism, Gene Expression Regulation, Developmental physiology, Recovery of Function physiology
- Abstract
Intraventricular hemorrhage (IVH) results in white matter injury and hydrocephalus in premature infants. Chondroitin sulfate proteoglycans (CSPGs)-neuorcan, brevican, versican, aggrecan and phosphacan-are unregulated in the extracellular matrix after brain injury, and their degradation enhances plasticity of the brain. Therefore, we hypothesized that CSPG levels were elevated in the forebrain of premature infants with IVH and that in vivo degradation of CSPGs would enhance maturation of oligodendrocyte, augment myelination, promote neurological recovery, and minimize hydrocephalus. We found that levels of neurocan, brevican, aggrecan, phosphacan, and versican were elevated, whereas NG2 expression was reduced in premature rabbit pups and human infants with IVH compared to controls. Intracerebroventricular chondroitinase ABC (ChABC) reduced the expression of neuorcan, brevican, versican and aggrecan, but not NG2. However, ChABC treatment did not enhance maturation of oligodendrocytes, myelination, or neurological recovery in the pups with IVH. Moreover, ChABC did not reduce gliosis or ventriculomegaly. Our results demonstrate that IVH induces distinct changes in the components of CSPGs, and that reversing these changes by in vivo ChABC treatment neither promotes clinical recovery, myelination, nor reduces ventriculomegaly in preterm rabbit pups., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
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5. Interactions of STAT3 with caveolin-1 and heat shock protein 90 in plasma membrane raft and cytosolic complexes. Preservation of cytokine signaling during fever.
- Author
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Shah M, Patel K, Fried VA, and Sehgal PB
- Subjects
- Animals, Benzoquinones, Cattle, Caveolin 1, Cell Fractionation, Cell Membrane chemistry, Cell Nucleus metabolism, Cells, Cultured, Cyclodextrins metabolism, Cysteine Proteinase Inhibitors metabolism, Endothelium, Vascular cytology, Endothelium, Vascular metabolism, Filipin metabolism, Genes, Reporter, Heat-Shock Proteins metabolism, Hepatocytes cytology, Hepatocytes metabolism, Hot Temperature, Humans, Interferon-gamma metabolism, Interleukin-6 metabolism, Isomerases metabolism, Lactams, Macrocyclic, Macromolecular Substances, Molecular Chaperones metabolism, Phosphorylation, Protein Binding, Protein Disulfide-Isomerases, Quinones metabolism, Respiratory Mucosa cytology, Respiratory Mucosa metabolism, STAT1 Transcription Factor, STAT3 Transcription Factor, Tyrosine metabolism, Caveolins metabolism, Cell Membrane metabolism, DNA-Binding Proteins metabolism, HSP90 Heat-Shock Proteins metabolism, Membrane Microdomains metabolism, Protein Transport physiology, Signal Transduction physiology, Trans-Activators metabolism, beta-Cyclodextrins
- Abstract
Interleukin-6 (IL-6) initiates STAT3 signaling in plasma membrane rafts with the subsequent transit of Tyr-phosphorylated STAT3 (PY-STAT3) through the cytoplasmic compartment to the nucleus in association with accessory proteins. We initially identified caveolin-1 (cav-1) as a candidate STAT3-associated accessory protein due to its co-localization with STAT3 and PY-STAT3 in flotation raft fractions, and heat shock protein 90 (HSP90) due to its inclusion in cytosolic STAT3-containing 200-400-kDa complexes. Subsequent immunomagnetic bead pullout assays showed that STAT3, PY-STAT3, cav-1, and HSP90 interacted in plasma membrane and cytoplasmic complexes derived from uninduced and stimulated Hep3B cells. This was a general property of STAT3 in that these interactions were also observed in alveolar epithelial type II-like cells, lung fibroblasts, and pulmonary arterial endothelial cells. Exposure of Hep3B cells to the raft disrupter methyl-beta-cyclodextrin for 1-10 min followed by IL-6 stimulation for 15 min preferentially inhibited the appearance of PY-STAT3 in the cav-1-enriched sedimentable cytoplasmic fraction, suggesting that these complexes may represent a trafficking intermediate immediately downstream from the raft. Because IL-6 is known to function in the body in the context of fever, the possibility that HSP90 may help preserve IL-6-induced STAT3 signaling at elevated temperature was investigated. Geldanamycin, an HSP90 inhibitor, markedly inhibited IL-6-stimulated STAT3 signaling in Hep3B hepatocytes cultured overnight at 39.5 degrees C as evaluated by DNA-shift assays, trafficking of PY-STAT3 to the nucleus, cross-precipitation of HSP90 by anti-STAT3 polyclonal antibody, and reporter/luciferase construct experiments. Taken together, the data show that IL-6/raft/STAT3 signaling is a chaperoned pathway that involves cav-1 and HSP90 as accessory proteins and suggest a mechanism for the preservation of this signaling during fever.
- Published
- 2002
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6. Association of the chaperone glucose-regulated protein 58 (GRP58/ER-60/ERp57) with Stat3 in cytosol and plasma membrane complexes.
- Author
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Guo GG, Patel K, Kumar V, Shah M, Fried VA, Etlinger JD, and Sehgal PB
- Subjects
- Antigens, CD metabolism, Carcinoma, Hepatocellular metabolism, Cell Compartmentation, Cell Membrane metabolism, Cytokine Receptor gp130, Cytosol metabolism, Endoplasmic Reticulum Chaperone BiP, Heat-Shock Proteins pharmacology, Humans, Isomerases pharmacology, Liver Neoplasms metabolism, Membrane Glycoproteins metabolism, Molecular Chaperones pharmacology, Protein Disulfide-Isomerases, Recombinant Proteins metabolism, Recombinant Proteins pharmacology, STAT3 Transcription Factor, Signal Transduction, Tumor Cells, Cultured, DNA-Binding Proteins metabolism, Heat-Shock Proteins metabolism, Isomerases metabolism, Molecular Chaperones metabolism, Trans-Activators metabolism
- Abstract
Glucose-regulated protein 58 (GRP58/ER-60/ERp57), best known as a chaperone in the endoplasmic reticulum lumen, was previously identified by us as one of several accessory proteins in the S100 cytosol fraction of human hepatoma Hep3B cells that was differentially coshifted by anti-Stat3 antibody in an antibody-subtracted differential protein display assay. In the present study, the association between GRP58 and Stat3 in different cytoplasmic compartments was evaluated using cross-immunoprecipitation and cell-fractionation techniques. In the S100 cytosol fraction, three different anti-GRP58 polyclonal antibodies (pAb) cross-immunoprecipitated Stat3 (but not Stat1), and, conversely, anti-Stat3 pAb cross-immunoprecipitated GRP58. Both cytosolic Stat3 and GRP58 eluted during Superose-6 gel-filtration chromatography in complexes of size 200-400 kDa (statosome I), and anti-Stat3 pAb cross-immunoprecipitated GRp58 from these FPLC elution fractions. Using differential sedimentation and density equilibrium flotation methods, Stat3 and GRP58 were observed to be coassociated with cytoplasmic membranes enriched for the plasma membrane marker 5' nucleotidase but not with those containing the endoplasmic reticulum marker BiP/GRP78. The Stat3 and GRP58-containing plasma membrane fraction also contained Stat1, Stat5b, and gp130. Stat activation by orthovanadate caused the accumulation of PY-Stat3 in the GRP58-containing plasma membrane fraction. However, this PY-Stat3 was DNA-binding deficient. Likewise, excess exogenous recombinant human GRP58 prepared using a baculovirus expression system preferentially inhibited Stat3 DNA-binding activity in the S100 cytosol, suggesting that GRP58 may sequester activated Stat3. The new data confirm the association between GRP58 and Stat3 in cytosolic 200-400-kDa statosome I complexes and show that both GRP58 and Stat family members coassociate in the plasma membrane compartment. We suggest that the chaperone GRP58 may regulate signaling by sequestering inactive and activated Stat3.
- Published
- 2002
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7. Jun NH2-terminal kinase phosphorylation of p53 on Thr-81 is important for p53 stabilization and transcriptional activities in response to stress.
- Author
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Buschmann T, Potapova O, Bar-Shira A, Ivanov VN, Fuchs SY, Henderson S, Fried VA, Minamoto T, Alarcon-Vargas D, Pincus MR, Gaarde WA, Holbrook NJ, Shiloh Y, and Ronai Z
- Subjects
- Animals, Base Sequence, Binding Sites, Cell Division, Cell Line, DNA Primers genetics, Drug Stability, Dual-Specificity Phosphatases, Genes, p53, Humans, Intracellular Signaling Peptides and Proteins, JNK Mitogen-Activated Protein Kinases, MAP Kinase Kinase 4, Mass Spectrometry, Mice, Mitogen-Activated Protein Kinase Kinases metabolism, Mitogen-Activated Protein Kinase Phosphatases, Mitogen-Activated Protein Kinases genetics, Mutation, Neoplasms genetics, Neoplasms metabolism, Oligonucleotides, Antisense pharmacology, Phosphorylation, Protein Tyrosine Phosphatases metabolism, Stress, Physiological genetics, Stress, Physiological metabolism, Threonine chemistry, Transcription, Genetic, Tumor Suppressor Protein p53 genetics, Ultraviolet Rays, Mitogen-Activated Protein Kinases metabolism, Tumor Suppressor Protein p53 chemistry, Tumor Suppressor Protein p53 metabolism
- Abstract
The p53 tumor suppressor protein plays a key role in the regulation of stress-mediated growth arrest and apoptosis. Stress-induced phosphorylation of p53 tightly regulates its stability and transcriptional activities. Mass spectrometry analysis of p53 phosphorylated in 293T cells by active Jun NH2-terminal kinase (JNK) identified T81 as the JNK phosphorylation site. JNK phosphorylated p53 at T81 in response to DNA damage and stress-inducing agents, as determined by phospho-specific antibodies to T81. Unlike wild-type p53, in response to JNK stimuli p53 mutated on T81 (T81A) did not exhibit increased expression or concomitant activation of transcriptional activity, growth inhibition, and apoptosis. Forced expression of MKP5, a JNK phosphatase, in JNK kinase-expressing cells decreased T81 phosphorylation while reducing p53 transcriptional activity and p53-mediated apoptosis. Similarly transfection of antisense JNK 1 and -2 decreased T81 phosphorylation in response to UV irradiation. More than 180 human tumors have been reported to contain p53 with mutations within the region that encompasses T81 and the JNK binding site (amino acids 81 to 116). Our studies identify an additional mechanism for the regulation of p53 stability and functional activities in response to stress.
- Published
- 2001
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8. Oxidative stress increases ubiquitin--protein conjugates in synaptosomes.
- Author
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Ramanathan M, Hassanain M, Levitt M, Seth A, Tolman JS, Fried VA, and Ingoglia NA
- Subjects
- Animals, Ferrous Compounds pharmacology, Leupeptins pharmacology, Male, Nerve Tissue Proteins drug effects, Rats, Rats, Sprague-Dawley, Synaptosomes drug effects, Time Factors, Nerve Tissue Proteins metabolism, Oxidative Stress physiology, Synaptosomes metabolism, Ubiquitins metabolism
- Abstract
Synaptosomes were incubated in the presence of FeSO4 to test the hypothesis that iron-catalyzed oxidative damage causes an increase in the ubiquitination of synaptosomal proteins. Incubation with 10 or 50 microM FeSO4 caused concentration-dependent increases in carbonyl groups (an indication of protein oxidation) and ubiquitinated proteins (determined by probing Western blots with a monoclonal antibody to ubiquitin). Differences in protein ubiquitination occurred within 5 min of incubation, indicating a rapid response to oxidative stress. Results of experiments with MG-132, an inhibitor of the degradation of ubiquitinated proteins, suggested that oxidative damage stimulated ubiquitination rather than inhibited degradation of ubiquitinated proteins. The data are consistent with the hypothesis that synaptic terminals utilize the ubiquitin/proteasome proteolytic pathway to degrade oxidatively damaged proteins.
- Published
- 1999
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9. Cellular physiology of STAT3: Where's the cytoplasmic monomer?
- Author
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Ndubuisi MI, Guo GG, Fried VA, Etlinger JD, and Sehgal PB
- Subjects
- Animals, Biological Transport, Cell Compartmentation physiology, Cytokines pharmacology, Humans, Rats, STAT3 Transcription Factor, Signal Transduction drug effects, Tumor Cells, Cultured, DNA-Binding Proteins physiology, Signal Transduction physiology, Trans-Activators physiology
- Abstract
In the standard model of cytokine-induced signal transducer and activator of transcription (STAT) protein family signaling to the cell nucleus, it is assumed that STAT3 is recruited to the cytoplasmic side of the cell surface receptor complex from within a cytosolic monomer pool. By using Superose-6 gel-filtration chromatography, we have discovered that there is little monomeric STAT3 (91 kDa) in the cytosol of liver cells (human hepatoma Hep3B cell line and rat liver). The bulk of STAT3 (and STAT1, STAT5a, and -b) was present in the cytosol as high molecular mass complexes in two broad distributions in the size range 200-400 kDa ("statosome I") and 1-2 MDa ("statosome II"). Upon treatment of Hep3B cells with interleukin-6 (IL-6) for 30 min (i) cytosolic tyrosine-phosphorylated STAT3 was found to be in complexes of size ranging from 200-400 kDa to 1-2 MDa; (ii) a small pool of monomeric STAT3 and tyrosine-phosphorylated STAT3 eluting at 80-100 kDa was observed, and (iii) most of the cytoplasmic DNA-binding competent STAT3 (the so-called SIF-A "homodimer") co-eluted with catalase at 230 kDa. In order to identify the protein components of the 200-400-kDa statosome I cytosolic complexes, we used the novel technique of antibody-subtracted differential protein display using anti-STAT3 antibody. Eight polypeptides in the size range from 20 to 114 kDa co-shifted with STAT3; three of these (p60, p20a, and p20b) were co-shifted in an IL-6-dependent manner. In-gel tryptic fragmentation and mass spectroscopy identified the major IL-6-dependent STAT3-co-shifted p60 protein as the chaperone GRP58/ER-60/ERp57. Taken together, these data (i) emphasize the absence of a detectable STAT3 monomer pool in the cytosol of cytokine-free liver cells as posited by the standard model, and (ii) suggest an alternative model for STAT signaling in which STAT3 proteins function in the cytoplasm as heteromeric complexes with accessory scaffolding proteins, including the chaperone GRP58.
- Published
- 1999
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10. Phosphorylation sites in the integrin beta3 cytoplasmic domain in intact platelets.
- Author
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Lerea KM, Cordero KP, Sakariassen KS, Kirk RI, and Fried VA
- Subjects
- Blood Platelets cytology, Cell Adhesion drug effects, Humans, Marine Toxins, Oxazoles pharmacology, Phosphorylation, Platelet Glycoprotein GPIIb-IIIa Complex chemistry, Signal Transduction, Threonine metabolism, Blood Platelets metabolism, Cytoplasm metabolism, Platelet Glycoprotein GPIIb-IIIa Complex metabolism
- Abstract
Protein seryl/threonyl phosphatase inhibitors such as calyculin A block inside-out and outside-in platelet signaling. Our studies demonstrate that the addition of calyculin A blocks platelet adhesion and spreading on fibrinogen, responses that depend on integrin alphaIIb beta3 signaling. We hypothesized that this reflects a change in alphaIIb beta3 structure caused by a specific state of phosphorylation. We show that addition of calyculin A leads to increased phosphorylation of the beta3 subunit, and phosphoamino acid analysis reveals that only threonine residues become phosphorylated; sequence analysis by Edman degradation established that threonine 753 became stoichiometrically phosphorylated during inhibition of platelet phosphatases by calyculin A. This region of beta3 is linked to outside-in signaling such as platelet spreading responses. The effect of calyculin A on platelet adhesion and spreading and on the phosphorylation of T-753 in beta3 is reversed by the calcium ionophore A23187, demonstrating that these effects of calyculin A are not generally toxic ones. We propose that phosphorylation of beta3 on threonine 753, a region of beta3 linked to outside-in signaling, may be a mechanism by which integrin alphaIIb beta3 function is regulated.
- Published
- 1999
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11. Stress-activated kinases regulate protein stability.
- Author
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Fuchs SY, Fried VA, and Ronai Z
- Subjects
- Animals, DNA-Binding Proteins metabolism, Glycogen Synthase Kinase 3, Humans, I-kappa B Kinase, JNK Mitogen-Activated Protein Kinases, Janus Kinase 3, NF-kappa B metabolism, Protein Kinase C metabolism, Protein-Tyrosine Kinases metabolism, STAT1 Transcription Factor, Trans-Activators metabolism, beta Catenin, Calcium-Calmodulin-Dependent Protein Kinases metabolism, Cytoskeletal Proteins metabolism, Mitogen-Activated Protein Kinases, Protein Serine-Threonine Kinases metabolism, Proteins metabolism, Stress, Physiological
- Abstract
Proteasome inhibitors have been used to demonstrate that many proteins of the signal transduction pathways are regulated by degradation via the ubiquitin-proteasome pathway. The key question is what events target specific proteins for ubiquitination at one time and prevent ubiquitination at other times? In this review, we develop the notion that there is a direct relationship between the phosphorylation/dephosphorylation cascade of the signal transduction pathways and the targeting of the regulatory proteins for ubiquitination. We present examples where phosphorylation appears to alter the interaction between the targeting systems and the substrate by modifying the targeting system, the substrate, or both. These interacting systems are seen in the response of p53, c-jun and ATF-2 in cells subjected to stress or DNA damage and to the normal regulated response in a variety of pathways including the IkappaB-NFkappaB and JAK-STAT pathways. The interweaving of the two post-translational networks, phosphorylation and ubiquitination, provides a powerful insight into global regulatory control pathways.
- Published
- 1998
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12. A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3.
- Author
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Glickman MH, Rubin DM, Coux O, Wefes I, Pfeifer G, Cjeka Z, Baumeister W, Fried VA, and Finley D
- Subjects
- COP9 Signalosome Complex, Carrier Proteins physiology, Cysteine Endopeptidases ultrastructure, Fungal Proteins chemistry, Fungal Proteins physiology, Fungal Proteins ultrastructure, Microscopy, Electron, Multienzyme Complexes ultrastructure, Multiprotein Complexes, Peptide Hydrolases, Proteasome Endopeptidase Complex, Proto-Oncogene Proteins c-ets, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, Sequence Homology, Amino Acid, Signal Transduction physiology, Ubiquitins physiology, Cysteine Endopeptidases chemistry, Cysteine Endopeptidases physiology, DNA-Binding Proteins, Multienzyme Complexes chemistry, Multienzyme Complexes physiology, Plant Proteins physiology, Proteins, Proto-Oncogene Proteins physiology, Transcription Factors physiology, Ubiquitins metabolism
- Abstract
The proteasome consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP), which selects ubiquitinated substrates for translocation into the CP. An eight-subunit subcomplex of the RP, the lid, can be dissociated from proteasomes prepared from a deletion mutant for Rpn10, an RP subunit. A second subcomplex, the base, contains all six proteasomal ATPases and links the RP to the CP. The base is sufficient to activate the CP for degradation of peptides or a nonubiquitinated protein, whereas the lid is required for ubiquitin-dependent degradation. By electron microscopy, the base and the lid correspond to the proximal and distal masses of the RP, respectively. The lid subunits share sequence motifs with components of the COP9/signalosome complex and eIF3, suggesting that these functionally diverse particles have a common evolutionary ancestry.
- Published
- 1998
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13. The mouse and human genes encoding the recognition component of the N-end rule pathway.
- Author
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Kwon YT, Reiss Y, Fried VA, Hershko A, Yoon JK, Gonda DK, Sangan P, Copeland NG, Jenkins NA, and Varshavsky A
- Subjects
- Amino Acid Sequence, Animals, Chromosome Mapping, Chromosomes, Human, Pair 15, Cloning, Molecular, DNA, Complementary isolation & purification, Humans, In Situ Hybridization, Mice, Molecular Sequence Data, Saccharomyces cerevisiae, Sequence Alignment, Sequence Analysis, DNA, Complementary genetics, Fungal Proteins genetics, Ligases, Proteins genetics, Saccharomyces cerevisiae Proteins, Ubiquitin-Protein Ligases
- Abstract
The N-end rule relates the in vivo half-life of a protein to the identity of its N-terminal residue. The N-end rule pathway is one proteolytic pathway of the ubiquitin system. The recognition component of this pathway, called N-recognin or E3, binds to a destabilizing N-terminal residue of a substrate protein and participates in the formation of a substrate-linked multiubiquitin chain. We report the cloning of the mouse and human Ubr1 cDNAs and genes that encode a mammalian N-recognin called E3alpha. Mouse UBR1p (E3alpha) is a 1,757-residue (200-kDa) protein that contains regions of sequence similarity to the 225-kDa Ubr1p of the yeast Saccharomyces cerevisiae. Mouse and human UBR1p have apparent homologs in other eukaryotes as well, thus defining a distinct family of proteins, the UBR family. The residues essential for substrate recognition by the yeast Ubr1p are conserved in the mouse UBR1p. The regions of similarity among the UBR family members include a putative zinc finger and RING-H2 finger, another zinc-binding domain. Ubr1 is located in the middle of mouse chromosome 2 and in the syntenic 15q15-q21.1 region of human chromosome 15. Mouse Ubr1 spans approximately 120 kilobases of genomic DNA and contains approximately 50 exons. Ubr1 is ubiquitously expressed in adults, with skeletal muscle and heart being the sites of highest expression. In mouse embryos, the Ubr1 expression is highest in the branchial arches and in the tail and limb buds. The cloning of Ubr1 makes possible the construction of Ubr1-lacking mouse strains, a prerequisite for the functional understanding of the mammalian N-end rule pathway.
- Published
- 1998
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14. The regulatory particle of the Saccharomyces cerevisiae proteasome.
- Author
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Glickman MH, Rubin DM, Fried VA, and Finley D
- Subjects
- Amino Acid Sequence, Cell Cycle Proteins genetics, Cell Cycle Proteins metabolism, Chromatography, Affinity, Cysteine Endopeptidases genetics, Cysteine Endopeptidases metabolism, DNA, Fungal chemistry, Gene Library, Molecular Sequence Data, Molecular Weight, Multienzyme Complexes genetics, Multienzyme Complexes metabolism, Peptide Mapping, Proteasome Endopeptidase Complex genetics, Proteasome Endopeptidase Complex metabolism, Protein Conformation, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins metabolism, Sequence Alignment, Structure-Activity Relationship, Cysteine Endopeptidases chemistry, Endopeptidases, Multienzyme Complexes chemistry, Saccharomyces cerevisiae enzymology
- Abstract
The proteasome is a multisubunit protease responsible for degrading proteins conjugated to ubiquitin. The 670-kDa core particle of the proteasome contains the proteolytic active sites, which face an interior chamber within the particle and are thus protected from the cytoplasm. The entry of substrates into this chamber is thought to be governed by the regulatory particle of the proteasome, which covers the presumed channels leading into the interior of the core particle. We have resolved native yeast proteasomes into two electrophoretic variants and have shown that these represent core particles capped with one or two regulatory particles. To determine the subunit composition of the regulatory particle, yeast proteasomes were purified and analyzed by gradient sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Resolution of the individual polypeptides revealed 17 distinct proteins, whose identities were determined by amino acid sequence analysis. Six of the subunits have sequence features of ATPases (Rpt1 to Rpt6). Affinity chromatography was used to purify regulatory particles from various strains, each of which expressed one of the ATPases tagged with hexahistidine. In all cases, multiple untagged ATPases copurified, indicating that the ATPases assembled together into a heteromeric complex. Of the remaining 11 subunits that we have identified (Rpn1 to Rpn3 and Rpn5 to Rpn12), 8 are encoded by previously described genes and 3 are encoded by genes not previously characterized for yeasts. One of the previously unidentified subunits exhibits limited sequence similarity with deubiquitinating enzymes. Overall, regulatory particles from yeasts and mammals are remarkably similar, suggesting that the specific mechanistic features of the proteasome have been closely conserved over the course of evolution.
- Published
- 1998
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15. c-Jun NH2-terminal kinases target the ubiquitination of their associated transcription factors.
- Author
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Fuchs SY, Xie B, Adler V, Fried VA, Davis RJ, and Ronai Z
- Subjects
- 3T3 Cells, Activating Transcription Factor 2, Animals, Cysteine Endopeptidases metabolism, Hydrolysis, JNK Mitogen-Activated Protein Kinases, Mice, Multienzyme Complexes metabolism, Phosphorylation, Proteasome Endopeptidase Complex, Proto-Oncogene Proteins metabolism, Substrate Specificity, ets-Domain Protein Elk-1, Calcium-Calmodulin-Dependent Protein Kinases metabolism, Cyclic AMP Response Element-Binding Protein metabolism, DNA-Binding Proteins, Mitogen-Activated Protein Kinases, Proto-Oncogene Proteins c-jun metabolism, Transcription Factors metabolism, Ubiquitins metabolism
- Abstract
Regulatory proteins are often ubiquitinated, depending on their phosphorylation status as well as on their association with ancillary proteins that serve as adapters of the ubiquitination machinery. We previously demonstrated that c-Jun is targeted for ubiquitination by its association with inactive c-Jun NH2-terminal kinase (JNK). Phosphorylation by activated JNK protects c-Jun from ubiquitination, thus by prolonging its half-life. In the study reported here, we determined the ability of JNK to target ubiquitination of its other substrates (Elk1 and activating transcription factor 2 (ATF2)) and associated proteins (ATF2 and JunB). We demonstrate that phosphorylation by JNK protects ATF2, but not Elk1, from JNK-targeted ubiquitination. We also show that association of inactive JNK with JunB or ATF2 is necessary to target them for ubiquitination. Unlike its targeting of c-Jun, JNK requires additional cellular components, yet to be identified, to target the ubiquitination of ATF2. Elk1 is phosphorylated by JNK, but JNK neither associates with nor targets Elk1 for ubiquitination. The implications for the dual role of JNK in the regulation of ubiquitination and stability of c-Jun, ATF2, and JunB in normally growing versus stressed cells are discussed.
- Published
- 1997
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16. Reconstitution of the recombinant 70-kDa subunit of the clathrin-coated vesicle H+ ATPase.
- Author
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Peng SB, Zhang Y, Crider BP, White AE, Fried VA, Stone DK, and Xie XS
- Subjects
- Adenosine Triphosphate metabolism, Amino Acid Sequence, Animals, Base Sequence, Calcium metabolism, Cattle, Cloning, Molecular, DNA Primers chemistry, DNA, Complementary genetics, Enzyme Activation, In Vitro Techniques, Macromolecular Substances, Molecular Sequence Data, Recombinant Proteins, Coated Vesicles enzymology, Proton-Translocating ATPases chemistry
- Abstract
Vacuolar-type proton pumps are complex heterooligomers. When dissociated into subcomplexes and subunits, the partial reactions of ATP hydrolysis and transmembranous proton flow can be assigned to isolated domains. Data suggest that the molecular site of ATP hydrolysis resides within the 70-kDa subunit but that ATPase activity likely requires at least three additional subunits of 58, 40, and 33 kDa (Xie, X.-S., and Stone, D. K. (1988) J. Biol. Chem. 263, 9859-9867). We have now cloned and sequenced the 70-kDa subunit from bovine brain and have expressed the protein in insect Sf9 (Spodoptera frugiperda) cells with a recombinant baculovirus. When purified, the protein has no significant ATPase activity but can be photoaffinity labeled with [alpha 32P]ATP and UV irradiation with an apparent Kd of 35 microM. When reconstituted with biochemically prepared 58-, 40-, and 33-kDa polypeptides, the recombinant 70-kDa subunit restores Ca(2+)-activated ATP hydrolysis to a specific activity of 0.6 mumol P(i).mg protein-1.min-1, thus demonstrating that ATP hydrolysis in vacuolar-type proton pumps is dependent upon both the 70-kDa subunit as well as multi-subunit interactions.
- Published
- 1994
17. A hookworm glycoprotein that inhibits neutrophil function is a ligand of the integrin CD11b/CD18.
- Author
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Moyle M, Foster DL, McGrath DE, Brown SM, Laroche Y, De Meutter J, Stanssens P, Bogowitz CA, Fried VA, and Ely JA
- Subjects
- Amino Acid Sequence, Ancylostomatoidea metabolism, Animals, Base Sequence, CD18 Antigens, Cloning, Molecular, DNA Primers, DNA, Complementary, Dogs, Glycoproteins metabolism, Glycoproteins pharmacology, Helminth Proteins metabolism, Helminth Proteins pharmacology, Humans, Leukocytes drug effects, Leukocytes physiology, Membrane Proteins blood, Molecular Sequence Data, Neutrophils drug effects, Neutrophils immunology, Peptide Fragments chemistry, Peptide Fragments isolation & purification, Polymerase Chain Reaction, Protein Biosynthesis, Recombinant Proteins metabolism, Recombinant Proteins pharmacology, Ancylostomatoidea physiology, Antigens, CD metabolism, Glycoproteins isolation & purification, Helminth Proteins isolation & purification, Macrophage-1 Antigen metabolism, Neutrophils physiology
- Abstract
The chronic survival of many endoparasites is dependent on the ability of these organisms to escape the host immune response. Identification of the molecular mechanisms by which these organisms evade this response may yield novel approaches in the development of anti-inflammatory agents. We describe here the discovery and characterization of a novel 41-kilodalton glycoprotein from the canine hookwork (Ancylostoma caninum) that potently inhibits CD11/CD18-dependent neutrophil function in vitro. Neutrophil inhibitory factor (NIF) blocks the adhesion of activated human neutrophils to vascular endothelial cells as well as the release of H2O2 from activated neutrophils, over a similar concentration range (IC50 10-20 nM). Studies aimed at determining the nature of the NIF binding site on neutrophils revealed selective, high affinity binding of this protein to the integrin CD11b/CD18. A cDNA encoding NIF was isolated from a canine hookworm cDNA library. NIF comprises a mature polypeptide of 257 amino acids, preceded by a 17-amino acid leader. The mature protein has 10 cysteines and has seven potential N-linked glycosylation sites. NIF has no significant sequence homologies to any previously reported protein. As such, NIF represents a prototype of a novel class of leukocyte function inhibitors.
- Published
- 1994
18. Human hepatic 3 alpha-hydroxysteroid dehydrogenase: possible identity with human hepatic chlordecone reductase.
- Author
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Binstock JM, Iyer RB, Hamby CV, Fried VA, Schwartz IS, Weinstein BI, and Southren AL
- Subjects
- 3-Hydroxysteroid Dehydrogenases chemistry, 3-Hydroxysteroid Dehydrogenases immunology, 3-alpha-Hydroxysteroid Dehydrogenase (B-Specific), Alcohol Oxidoreductases chemistry, Alcohol Oxidoreductases immunology, Amino Acid Sequence, Electrophoresis, Polyacrylamide Gel, Humans, Immunoblotting, Molecular Sequence Data, Molecular Weight, NAD (+) and NADP (+) Dependent Alcohol Oxidoreductases, Peptide Fragments chemistry, Substrate Specificity, Trypsin, 3-Hydroxysteroid Dehydrogenases metabolism, Alcohol Oxidoreductases metabolism, Liver enzymology
- Abstract
3 alpha-Hydroxysteroid dehydrogenase is a cytosolic, monomeric, NADPH-dependent oxidoreductase which reduces 3-keto-5-dihydrosteroids to their tetrahydro products. We present here the first partial amino acid sequence data for the human liver enzyme and show these sequences to be identical to the deduced amino acid sequence for human hepatic chlordecone reductase. In addition, these two enzymes exhibit similar substrate and cofactor specificities and immunological reactivity. The results suggest that the natural substrates for chlordecone reductase are 3-keto-5-dihydrosteroids and that these two proteins may be identical.
- Published
- 1992
- Full Text
- View/download PDF
19. MacroH2A, a core histone containing a large nonhistone region.
- Author
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Pehrson JR and Fried VA
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, DNA chemistry, Histones genetics, Leucine Zippers, Macromolecular Substances, Mice, Molecular Sequence Data, Polymerase Chain Reaction, Rats, Sequence Homology, Nucleic Acid, Histones chemistry, Liver ultrastructure, Nucleosomes chemistry
- Abstract
A histone, macroH2A, nearly three times the size of conventional H2A histone, was found in rat liver nucleosomes. Its N-terminal third is 64 percent identical to a full-length mouse H2A. However, it also contains a large nonhistone region. This region has a segment that resembles a leucine zipper, a structure known to be involved in dimerization of some transcription factors. Nucleosomes containing macroH2A may have novel functions, possibly involving interactions with other nuclear proteins.
- Published
- 1992
- Full Text
- View/download PDF
20. Activation-induced ubiquitination of the T cell antigen receptor.
- Author
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Cenciarelli C, Hou D, Hsu KC, Rellahan BL, Wiest DL, Smith HT, Fried VA, and Weissman AM
- Subjects
- Animals, Antigens, Differentiation, T-Lymphocyte immunology, Antigens, Differentiation, T-Lymphocyte metabolism, CD3 Complex, Cells, Cultured, Hybridomas immunology, Macromolecular Substances, Mice, Mice, Inbred C57BL, Molecular Weight, Receptors, Antigen, T-Cell immunology, Receptors, Antigen, T-Cell isolation & purification, Spleen immunology, Ubiquitins isolation & purification, Lymphocyte Activation physiology, Protein Processing, Post-Translational, Receptors, Antigen, T-Cell metabolism, T-Lymphocytes immunology, Ubiquitins metabolism
- Abstract
The zeta subunit of the T cell antigen receptor (TCR) exists primarily as a disulfide-linked homodimer. This receptor subunit is important in TCR-mediated signal transduction and is a substrate for a TCR-activated protein tyrosine kinase. The zeta chain was found to undergo ubiquitination in response to receptor engagement. This posttranslational modification occurred in normal T cells and tumor lines. Both nonphosphorylated and phosphorylated zeta molecules were modified, and at least one other TCR subunit, CD3 delta, was also ubiquitinated after activation of the receptor. These findings suggest an expanded role for ubiquitination in transmembrane receptor function.
- Published
- 1992
- Full Text
- View/download PDF
21. Overexpression of three ubiquitin genes in mouse epidermal tumors is associated with enhanced cellular proliferation and stress.
- Author
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Finch JS, St John T, Krieg P, Bonham K, Smith HT, Fried VA, and Bowden GT
- Subjects
- Alkynes pharmacology, Amino Acid Sequence, Animals, Base Sequence, Cell Division physiology, DNA Probes, Female, Gene Expression Regulation, Neoplastic drug effects, Hot Temperature, Mice, Molecular Sequence Data, Neoplasm Proteins drug effects, Neoplasm Proteins genetics, RNA, Neoplasm analysis, Skin Neoplasms chemically induced, Skin Neoplasms pathology, Tetradecanoylphorbol Acetate pharmacology, Tumor Cells, Cultured, Ubiquitins drug effects, Ubiquitins genetics, Gene Expression Regulation, Neoplastic physiology, Neoplasm Proteins biosynthesis, Skin Neoplasms metabolism, Ubiquitins biosynthesis
- Abstract
A mouse ubiquitin clone that recognizes multiple transcripts overexpressed in murine tumors compared to normal epidermis was isolated by differential screening of complementary DNA libraries from mouse squamous cell carcinomas. Coding region probes detected five ubiquitin transcripts. Oligonucleotides were designed for unique parts of three mouse ubiquitin gene complementary DNA clones. The overexpressed transcripts at 2.4, 2.8, 6.4, and 7.8 kilobases (kb) were detected by an oligonucleotide specific for a mouse UbC polyubiquitin clone. A 1.2-kb UbB overexpressed transcript was detected by an oligonucleotide for a mouse four-unit polyubiquitin, and a 0.7-kb UbA overexpressed transcript was recognized by an oligonucleotide for the mouse ubiquitin carboxyl-extension protein of 52 amino acids. All three classes of transcripts were induced in mouse skin by the hyperproliferative agent ethylphenyl propionate and by the tumor promoting agent 12-O-tetradecanoylphorbol-13- acetate. Heat shock of cultured keratinocytes induced both the 6.4- and 7.8-kb transcripts recognized by the UbC-specific oligonucleotide. Consistent with the overexpression of the ubiquitin transcripts, the level of free ubiquitin protein, as determined by Western analysis, was elevated in the tumors and proliferating epidermis as compared to normal epidermis. Our results indicate that the overexpression of ubiquitin genes could be related to a sustained state of proliferation and stress in the tumors compared to the normal resting epidermis.
- Published
- 1992
22. cDNA cloning and expression of platelet p24/CD9. Evidence for a new family of multiple membrane-spanning proteins.
- Author
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Lanza F, Wolf D, Fox CF, Kieffer N, Seyer JM, Fried VA, Coughlin SR, Phillips DR, and Jennings LK
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cricetinae, Cricetulus, Electrophoresis, Polyacrylamide Gel, Female, Gene Expression Regulation, Humans, Molecular Sequence Data, Open Reading Frames, Polymerase Chain Reaction, Precipitin Tests, Restriction Mapping, Sequence Alignment, Tetraspanin 29, Transcription, Genetic, Xenopus, Antigens, CD genetics, Antigens, Differentiation genetics, Blood Platelets metabolism, DNA genetics, Membrane Glycoproteins
- Abstract
This study was designed to clone, sequence, and express the full-length cDNA for the human platelet p24/CD9 antigen. A 1.3-kilobase cDNA clone was identified that has an open reading frame encoding a mature protein of 228 amino acids (approximately 25,400 Da) containing 10 cysteine residues and four putative transmembrane domains. The identity of the clone was confirmed by: (i) its predicted size, (ii) identity to four peptide sequences from the isolated protein including the NH2 terminus, and (iii) expression of the isolated clone in Xenopus oocytes and Chinese hamster ovary cells. p24/CD9 has sequence identity (24-34%) to four other cell-surface proteins: ME491, a melanoma antigen; CO-029, a carcinoma antigen; CD37, a leukocyte antigen; and SM23, an antigen of the parasitic helminth Schistosoma mansoni. The five proteins have a similar number of amino acids and are characterized by the presence of four putative transmembrane domains. These data indicate the presence of a new family of surface antigens that may function in cellular activation and differentiation.
- Published
- 1991
23. Barbourin. A GPIIb-IIIa-specific integrin antagonist from the venom of Sistrurus m. barbouri.
- Author
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Scarborough RM, Rose JW, Hsu MA, Phillips DR, Fried VA, Campbell AM, Nannizzi L, and Charo IF
- Subjects
- Amino Acid Sequence, Fibrinogen antagonists & inhibitors, Fibrinogen metabolism, Molecular Sequence Data, Platelet Aggregation Inhibitors pharmacology, Platelet Membrane Glycoproteins isolation & purification, Crotalid Venoms isolation & purification, Crotalid Venoms pharmacology, Integrins antagonists & inhibitors, Platelet Membrane Glycoproteins pharmacology
- Abstract
Sixty-two snake venoms were screened to identify those which specifically inhibit the adhesive protein binding function of the glycoprotein (GP) IIb-IIIa complex, the receptor-mediating platelet aggregation. Although 52 of these venoms inhibited GPIIb-IIIa, only one of these, from the southeastern pigmy rattlesnake, Sistrurus m. barbouri, was specific for GPIIb-IIIa versus other integrins. The peptide responsible for this activity, termed barbourin, was sequenced and found to be highly homologous to other peptides of the viper venom GPIIb-IIIa antagonist family but was the first member which did not contain the Arg-Gly-Asp (RGD) amino acid sequence, believed to be required for inhibition of receptor function. Instead, barbourin contains the sequence, Lys-Gly-Asp (KGD). The conservative Lys for Arg substitution appears to be the sole structural feature which imparts integrin specificity to barbourin, since venom peptide analogs with Lys substitutions were also specific for GPIIb-IIIa. Thus, barbourin represents a new structural model useful for designing potent and GPIIb-IIIa-specific compounds that may have therapeutic value as platelet aggregation inhibitors.
- Published
- 1991
24. cDNA cloning of a novel 85 kd protein that has SH2 domains and regulates binding of PI3-kinase to the PDGF beta-receptor.
- Author
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Escobedo JA, Navankasattusas S, Kavanaugh WM, Milfay D, Fried VA, and Williams LT
- Subjects
- Amino Acid Sequence, Animals, Baculoviridae genetics, Cell Line, Cloning, Molecular, DNA, Molecular Sequence Data, Phosphatidylinositol 3-Kinases, Phosphoproteins metabolism, Receptors, Platelet-Derived Growth Factor, Recombinant Proteins genetics, Recombinant Proteins metabolism, Sequence Homology, Nucleic Acid, Phosphotransferases metabolism, Platelet-Derived Growth Factor metabolism, Receptors, Cell Surface metabolism, Sulfhydryl Compounds metabolism
- Abstract
Using immobilized PDGF receptor as an affinity reagent, we purified an 85 kd protein (p85) from cell lysates and we cloned its cDNA. The protein contains an SH3 domain and two SH2 domains that are homologous to domains found in several receptor-associated enzymes. Recombinant p85 overexpressed in mammalian cells inhibited the binding of endogenous p85 and a 110 kd protein to the receptor and also blocked the association of PI3-kinase activity with the receptor. Experiments with receptor mutants and with short peptides derived from the kinase insert region of the PDGF receptor showed that the recombinant p85 binds to a well-defined phosphotyrosine-containing sequence of the receptor. p85 appears to be the subunit of PI3-kinase that links the enzyme to the ligand-activated receptor.
- Published
- 1991
- Full Text
- View/download PDF
25. Structure of the 116-kDa polypeptide of the clathrin-coated vesicle/synaptic vesicle proton pump.
- Author
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Perin MS, Fried VA, Stone DK, Xie XS, and Südhof TC
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Biological Transport, Blotting, Northern, Brain Chemistry, Cattle, Molecular Sequence Data, RNA analysis, Clathrin metabolism, Coated Pits, Cell-Membrane metabolism, Proteins genetics, Vacuolar Proton-Translocating ATPases
- Abstract
A 116-kDa polypeptide has recently been found to be a common component of vacuolar proton pumps isolated from a variety of sources. The 116-kDa subunit of the proton pump was purified from clathrin-coated vesicles of bovine brain, and internal sequences were obtained from proteolytic peptides. Oligonucleotide probes designed from these peptide sequences were utilized in polymerase chain reactions to isolate partial bovine cDNA clones for the protein. Sequences from these were then utilized to isolate rat brain cDNA clones containing the full-length coding region. RNA blots indicate the presence of an abundant 3.9-kilobase message for the 116-kDa subunit in brain, and primer extension analysis demonstrates that the cloned sequence is full-length. The rat cDNA sequences predict synthesis of a protein of 96,267 Da. Analysis of the deduced amino acid sequence of the 116-kDa subunit suggests that it consists of two fundamental domains: a hydrophilic amino-terminal half that is composed of greater than 30% charged residues, and a hydrophobic carboxyl-terminal half that contains at least six transmembrane regions. The structural properties of the 116-kDa proton pump polypeptide agree well with its proposed function in coupling ATP hydrolysis by the cytoplasmic subunits to proton translocation by the intramembranous components of the pump.
- Published
- 1991
26. Abnormal phosphorylation of tau precedes ubiquitination in neurofibrillary pathology of Alzheimer disease.
- Author
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Bancher C, Grundke-Iqbal I, Iqbal K, Fried VA, Smith HT, and Wisniewski HM
- Subjects
- Aged, Antibodies, Monoclonal, Axons ultrastructure, Hippocampus pathology, Humans, Immune Sera, Immunohistochemistry, Intermediate Filament Proteins analysis, Neurofilament Proteins, Phosphorylation, Temporal Lobe pathology, tau Proteins, Alzheimer Disease pathology, Brain pathology, Microtubule-Associated Proteins analysis, Nerve Tissue Proteins analysis, Neurons pathology, Ubiquitins analysis
- Abstract
On tissue sections of Alzheimer brain, 4 antibodies to tau immunolabel not only neurofibrillary tangles, neuritic plaques and neuropil threads but also the tangle-free cytoplasm of a subset of hippocampal and cortical neurons we believe to be at a stage of alteration preceding the formation of paired helical filaments (PHF). Pretreatment of tissue sections with alkaline phosphatase leads to an increase in staining intensity and in number of immunoreactive lesions with antibodies directed to an amino terminal and to a mid-region of the tau molecule. The diffuse neuronal staining could not be observed with any of 7 monoclonal antibodies recognizing ubiquitin. We conclude (1) that abnormal phosphorylation of tau occurs prior to its incorporation into PHF and leads to its accumulation in the nerve cell body and (2) that ubiquitin is seen associated only when a neurofibrillary tangle is already formed.
- Published
- 1991
- Full Text
- View/download PDF
27. Genetic linkage studies suggest that Alzheimer's disease is not a single homogeneous disorder.
- Author
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St George-Hyslop PH, Haines JL, Farrer LA, Polinsky R, Van Broeckhoven C, Goate A, McLachlan DR, Orr H, Bruni AC, Sorbi S, Rainero I, Foncin JF, Pollen D, Cantu JM, Tupler R, Voskresenskaya N, Mayeux R, Growden J, Fried VA, Myers RH, Nee L, Backhovens H, Martin JJ, Rossor M, Owen MJ, Mullan M, Percy ME, Karlinsky H, Rich S, Heston L, Montesi M, Mortilla M, Nacmias N, Gusella JF, and Hardy JA
- Subjects
- Alzheimer Disease ethnology, Chromosomes, Human, Pair 21, Genetic Markers, Heterozygote, Humans, Lod Score, Pedigree, Alzheimer Disease genetics, Genetic Linkage
- Abstract
Alzheimer's disease, a fatal neurodegenerative disorder of unknown aetiology, is usually considered to be a single disorder because of the general uniformity of the disease phenotype. Two recent genetic linkage studies revealed co-segregation of familial Alzheimer disease with the D21S1/S11 and D21S16 loci on chromosome 21. But two other studies, one of predominantly multiplex kindreds with a late age-of-onset, the other of a cadre of kindreds with a unique Volga German ethnic origin, found absence of linkage at least to D21S1/S11. So far it has not been possible to discern whether these conflicting reports reflect aetiological heterogeneity, differences in methods of pedigree selection, effects of confounding variables in the analysis (for example, diagnostic errors, assortative matings), or true non-replication. To resolve this issue, we have now examined the inheritance of five polymorphic DNA markers from the proximal long arm of chromosome 21 in a large unselected series of pedigrees with familial Alzheimer's disease. Our data suggest that Alzheimer's disease is not a single entity, but rather results from genetic defects on chromosome 21 and from other genetic or nongenetic factors.
- Published
- 1990
- Full Text
- View/download PDF
28. Taurine and hypotaurine content of human leukocytes.
- Author
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Learn DB, Fried VA, and Thomas EL
- Subjects
- Alanine analysis, Cells, Cultured, Humans, Taurine metabolism, Tetradecanoylphorbol Acetate pharmacology, Leukocytes analysis, Taurine analogs & derivatives, Taurine blood
- Abstract
Taurine (T) was reported to be at high concentrations in human leukocytes. It was proposed that T is a scavenger for chlorinated oxidants produced by the myeloperoxidase system of monocytes and neutrophils. Hypotaurine (HT) would be a more effective scavenger, and HT could also detoxify products of bromide or iodide oxidation produced by the eosinophil peroxidase system. Methods previously used to measure T in leukocytes might oxidize HT to T or fail to separate T and HT. Therefore, we examined T and HT content, uptake, and biosynthesis in isolated blood cells and cultured tumor cells derived from hematopoietic/lymphoid cells. Platelets and all leukocytes including monocytes, lymphocytes, neutrophils, and eosinophils had high T levels (10-20 mM), and all except eosinophils had substantial HT levels (0.3-1 mM). Intracellular levels were 500-times higher than in plasma. Erythrocytes were the only blood cells with low levels of both T and HT. Tumor cells from lymphoid (CCRF-CEM) and myeloid (HL-60, K-562, RWLeu4, HEL) lineages took up and concentrated T and HT from the bovine calf serum in the culture medium, and intracellular levels were similar to those in leukocytes. When cells were cultured in HT-supplemented media, HT almost completely replaced T, and HT was not converted to T. Levels of T were not raised by culturing cells with possible precursors, but HT levels were raised when cysteine sulfinic acid was present. Washed tumor cells took up T and HT by way of a beta-amino acid transport system, but uptake by leukocytes was very low. Therefore, leukocytes may acquire T and HT by active uptake rather than biosynthesis, and uptake may be completed during differentiation in the bone marrow. Though HT is low relative to T, HT levels may be sufficient to protect leukocytes from toxic oxidants.
- Published
- 1990
29. Phospholipid binding by a synaptic vesicle protein homologous to the regulatory region of protein kinase C.
- Author
-
Perin MS, Fried VA, Mignery GA, Jahn R, and Südhof TC
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cloning, Molecular, Hemagglutination Inhibition Tests, Lipids, Molecular Sequence Data, Molecular Weight, Nerve Tissue Proteins metabolism, RNA, Messenger genetics, Rabbits, Rats, Recombinant Proteins metabolism, Sequence Homology, Nucleic Acid, Nerve Tissue Proteins genetics, Phospholipids metabolism, Protein Kinase C genetics, Synaptic Vesicles metabolism
- Abstract
Neurotransmitters are released at synapses by the Ca2(+)-regulated exocytosis of synaptic vesicles, which are specialized secretory organelles that store high concentrations of neurotransmitters. The rapid Ca2(+)-triggered fusion of synaptic vesicles is presumably mediated by specific proteins that must interact with Ca2+ and the phospholipid bilayer. We now report that the cytoplasmic domain of p65, a synaptic vesicle-specific protein that binds calmodulin contains an internally repeated sequence that is homologous to the regulatory C2-region of protein kinase C (PKC). The cytoplasmic domain of recombinant p65 binds acidic phospholipids with a specificity indicating an interaction of p65 with the hydrophobic core as well as the headgroups of the phospholipids. The binding specificity resembles PKC, except that p65 also binds calmodulin, placing the C2-regions in a context of potential Ca2(+)-regulation that is different from PKC. This is a novel homology between a cellular protein and the regulatory domain of protein kinase C. The structure and properties of p65 suggest that it may have a role in mediating membrane interactions during synaptic vesicle exocytosis.
- Published
- 1990
- Full Text
- View/download PDF
30. Purification and complementary DNA cloning of a receptor for basic fibroblast growth factor.
- Author
-
Lee PL, Johnson DE, Cousens LS, Fried VA, and Williams LT
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cells, Cultured, Chick Embryo, Kinetics, Mice, Molecular Sequence Data, Peptide Fragments analysis, Receptors, Cell Surface metabolism, Receptors, Fibroblast Growth Factor, Recombinant Proteins metabolism, Cloning, Molecular, DNA genetics, Fibroblast Growth Factors genetics, Receptors, Cell Surface genetics
- Abstract
Basic fibroblast growth factor (bFGF) participates in many processes including early developmental events, angiogenesis, wound healing, and maintenance of neuronal cell viability. A 130-kilodalton protein was isolated on the basis of its ability to specifically bind to bFGF. A complementary DNA clone was isolated with an oligonucleotide probe corresponding to determined amino acid sequences of tryptic peptide fragments of the purified protein. The putative bFGF receptor encoded by this complementary DNA is a transmembrane protein that contains three extracellular immunoglobulin-like domains, an unusual acidic region, and an intracellular tyrosine kinase domain. These domains are arranged in a pattern that is different from that of any growth factor receptor described.
- Published
- 1989
- Full Text
- View/download PDF
31. In vivo activation of quiescent B cells by anti-immunoglobulin. I. Induction of latent VH allotype production in adult rabbits by treatment with heterologous antibodies or antibody fragments.
- Author
-
Metzger DW, Fried VA, and Van Cleave VH
- Subjects
- Amino Acid Sequence, Animals, Antibody Diversity, Antigens, Surface immunology, Epitopes, Lymphocyte Activation, Macromolecular Substances, Rabbits, Receptors, Antigen, B-Cell immunology, Antibodies, Anti-Idiotypic immunology, B-Lymphocytes immunology, Immunoglobulin Allotypes immunology, Immunoglobulin Heavy Chains immunology, Immunoglobulin Variable Region immunology
- Abstract
We demonstrated previously that injection of adult rabbits with homologous anti-VHa1 allotype antibody induces the appearance in serum of genetically unexpected (latent) a1 immunoglobulin (Ig) and a1-like internal images. We have now investigated the mechanism for this induction effect and have found that treatment of animals with polyclonal goat or monoclonal mouse anti-a1 antibody similarly results in production of unexpected a1 determinants. The N-terminal amino acid sequences of deblocked heavy chains showed that latent a1 Ig induced by monoclonal antibody treatment was identical to nominal a1 Ig at 18 of 19 residues, with the one amino acid difference at position 13 probably due to a single nucleotide change. Like nominal a1, these molecules expressed multiple VHa1 framework epitopes, as demonstrated by direct immunoelectron microscopic visualization of immune complexes. Whereas F(ab)'2 fragments of rabbit anti-a1 antibody retained inducing activity, F(ab) fragments were effective only when administered in an aggregated form; this result suggests that cross-linking of surface Ig receptors plays a critical role in the induction process. We conclude that all rabbits contain dormant B cells expressing germ-line-encoded latent allotypes, and that in vivo administration of anti-Ig antibody causes activation of these cells directly rather than through perturbation of an allotype regulatory network.
- Published
- 1987
32. Glycosylation affects cleavage of an H5N2 influenza virus hemagglutinin and regulates virulence.
- Author
-
Deshpande KL, Fried VA, Ando M, and Webster RG
- Subjects
- Amino Acid Sequence, Animals, Chick Embryo, Chromatography, High Pressure Liquid, Glycopeptides analysis, Hemagglutinins, Viral isolation & purification, Influenza A virus genetics, Oligosaccharides analysis, Peptide Fragments analysis, Trypsin, Virulence, Genes, Genes, Viral, Glycoproteins genetics, Hemagglutinins, Viral genetics, Influenza A Virus, H5N2 Subtype, Influenza A virus pathogenicity
- Abstract
Based on nucleotide sequence analysis of the hemagglutinin (HA) gene from the virulent and avirulent A/chicken/Pennsylvania/83 influenza viruses, it was previously postulated that acquisition of virulence was associated with a point mutation that resulted in loss of a glycosylation site. Since there are two potential glycosylation sites in this region of the HA molecule and since all Asn-Xaa-Thr/Ser sequences in the HAs of different strains are not necessarily glycosylated, the question remained open as to whether either one of these sites was glycosylated. We now provide direct evidence that a site-specific glycosylation affects cleavage of the influenza virus HA and thus virulence. We have identified the glycosylation sites on the HA1 subunit from the virulent and avirulent strains by direct structural analysis of the isolated proteins. Our results show that the only difference in glycosylation between the HA1s of the virulent and avirulent strains is the lack of an asparagine-linked carbohydrate on the virulent HA1 polypeptide at residue 11. Further, we show that the HA1s of both the avirulent and virulent viruses are not glycosylated at one potential site, while all other sites contain carbohydrate. Amino acid sequence analysis of the HA1 of an avirulent revertant of the virulent strain confirmed these findings.
- Published
- 1987
- Full Text
- View/download PDF
33. A novel proteolytic activity apparently initiating degradation of beta-galactosidase nonsense fragments in in vitro extracts of Escherichia coli.
- Author
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McKnight JL and Fried VA
- Subjects
- Kinetics, Macromolecular Substances, Peptide Hydrolases isolation & purification, Escherichia coli enzymology, Galactosidases metabolism, Peptide Hydrolases metabolism, beta-Galactosidase metabolism
- Abstract
Our previous in vivo studies demonstrated that large premature fragments of beta-galactosidase are degraded in Escherichia coli by a common pathway, and the initial event appears to be a site-specific cleavage (McKnight, J. L., and Fried, V. A. (1981) J. Biol. Chem. 256, 9652-9661). We now have developed a cell-free system that retains the specificity of this early cleavage event. Immunochemical techniques were used to isolate and quantitate the polypeptide substrate and products in pulse-chase experiments. The in vitro system has an activity that quantitatively converts the prematurely terminated A polypeptide of the lacZ non-sense mutant CSH-10 to the 90-kilodalton common B polypeptide intermediate observed in vivo. The activity is localized in the cytoplasm since the cleavage reaction is not affected by osmotic shock of whole cells or removal of the membrane fraction from cell-free extracts. The lon mutation capR9, which blocks this degradation pathway in vivo, does not affect the initial cleavage event in cell-free extracts of CSH-10 carrying this mutation. The in vitro cleavage event in extracts of lon+ CSH-10 or the isogenic lon- mutant is not stimulated by addition of ATP, not inhibited by depletion of ATP pools by hexokinase-2-deoxyglucose treatment, and not inhibited by EDTA or phenylmethylsulfonyl fluoride. These results suggest that the ATP-dependent proteolytic activity of the lon gene product does not directly catalyze this primary cleavage event.
- Published
- 1983
34. Expression cloning of a lymphocyte homing receptor cDNA: ubiquitin is the reactive species.
- Author
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St John T, Gallatin WM, Siegelman M, Smith HT, Fried VA, and Weissman IL
- Subjects
- Amino Acid Sequence, Animals, Antibody Specificity, Base Sequence, Cloning, Molecular, Endothelium metabolism, Gene Expression Regulation, Lymphatic System metabolism, Mice, Receptors, Cell Surface immunology, Receptors, Cell Surface metabolism, Ubiquitins immunology, Ubiquitins metabolism, Antibodies, Monoclonal immunology, High Mobility Group Proteins genetics, Lymphocytes physiology, Receptors, Cell Surface genetics, Ubiquitins genetics
- Abstract
The lymphocyte cell surface receptor for the high endothelial venules (HEV's) of peripheral lymph nodes is specifically recognized by the monoclonal antibody MEL-14. Three independent complementary DNA (cDNA) clones, each of which encodes the protein ubiquitin, were detected by virtue of the expression of the MEL-14 antigenic determinant on cDNA-beta-galactosidase bacterial fusion proteins. The antigenic determinant defined by MEL-14 resides in the carboxyl terminal 13-amino-acid proteolytic peptide of ubiquitin, but is undetected in intact undenatured ubiquitin and other cellular ubiquitinated proteins. Antisera and monoclonal antibodies to ubiquitin determinants bind to the surface of both HEV-receptor positive and negative cell lines. The MEL-14-identified cDNA clones hydridize to RNA transcripts that encode tandemly repeated ubiquitins. Sequence analysis of these polyubiquitin cDNA's does not identify a leader sequence for export to the cell surface. The expression of the MEL-14 epitope of ubiquitin depends upon its local environment. The steady-state levels of expression of the ubiquitin messenger RNA's do not correlate with either the tissue derivation of the RNA or the expression of the lymphocyte HEV receptor. Regulation of the expression of the HEV receptor is not likely to reflect the transcriptional control of ubiquitin genes, but rather to reflect control of the expression of the HEV core polypeptide or its level or form of ubiquitination.
- Published
- 1986
- Full Text
- View/download PDF
35. Ubiquitin is associated with abnormal cytoplasmic filaments characteristic of neurodegenerative diseases.
- Author
-
Manetto V, Perry G, Tabaton M, Mulvihill P, Fried VA, Smith HT, Gambetti P, and Autilio-Gambetti L
- Subjects
- Brain pathology, Humans, Microscopy, Electron, Alzheimer Disease pathology, Brain ultrastructure, Cytoskeleton ultrastructure, Dementia pathology, Parkinson Disease pathology, Ubiquitins analysis
- Abstract
Several degenerative diseases of the nervous system are characterized by the presence of neuronal inclusions. Most of these inclusions are made of abnormal filaments and share epitopes with cytoskeletal proteins. One of these inclusions, the neurofibrillary tangle of Alzheimer disease, has recently been shown to contain ubiquitin, a regulatory protein thought to play a role in the degradation of abnormal proteins. We carried out light and electron microscopic immunocytochemistry with several polyclonal and monoclonal antibodies to investigate the presence of ubiquitin in neuronal inclusions of neurodegenerative diseases. Ubiquitin was present not only in paired helical filaments that form the neurofibrillary tangle of Alzheimer disease, but also in the filamentous components of the inclusion characteristic of Parkinson disease, Pick disease, and progressive supranuclear palsy. In contrast, ubiquitin was not detected in other neuronal inclusions often found in aging and in Alzheimer disease, such as Hirano bodies and granulovacuolar degeneration. Reactivity with monoclonal antibodies suggests differences in the ubiquitin-acceptor proteins present in the inclusions studied. It is concluded that ubiquitin is selectively present in neuronal inclusions of degenerative diseases.
- Published
- 1988
- Full Text
- View/download PDF
36. Cell surface molecule associated with lymphocyte homing is a ubiquitinated branched-chain glycoprotein.
- Author
-
Siegelman M, Bond MW, Gallatin WM, St John T, Smith HT, Fried VA, and Weissman IL
- Subjects
- Amino Acid Sequence, Animals, Antibodies, Monoclonal, Cell Movement, Endothelium metabolism, Glycoproteins metabolism, Glycoside Hydrolases metabolism, Mannosyl-Glycoprotein Endo-beta-N-Acetylglucosaminidase, Membrane Proteins metabolism, Mice, Molecular Weight, Protein Processing, Post-Translational, Receptors, Cell Surface metabolism, Ubiquitins immunology, Glycoproteins physiology, High Mobility Group Proteins metabolism, Lymphocytes physiology, Membrane Proteins physiology, Receptors, Cell Surface physiology, Ubiquitins metabolism
- Abstract
Partial amino acid sequence analysis of a purified lymphocyte homing receptor demonstrates the presence of two amino termini, one of which corresponds precisely to the amino terminus of ubiquitin. This observation extends the province of this conserved polypeptide to the cell surface and leads to a proposed model of the receptor complex as a core polypeptide modified by glycosylation and ubiquitination. Independent antibodies to ubiquitin serve to identify additional cell surface species, an indication that ubiquitination of cell surface proteins may be more general. It is proposed that functional binding of lymphocytes to lymph node high endothelial venules might involve the ubiquitinated region of the receptor; if true, cell surface ubiquitin could play a more general role in cell-cell interaction and adhesion.
- Published
- 1986
- Full Text
- View/download PDF
37. Insulin-like growth factor II receptor as a multifunctional binding protein.
- Author
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Morgan DO, Edman JC, Standring DN, Fried VA, Smith MC, Roth RA, and Rutter WJ
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Carrier Proteins, DNA genetics, DNA, Recombinant, Humans, Membrane Proteins, Oocytes metabolism, Rats, Receptor, IGF Type 2, Receptors, Somatomedin, Repetitive Sequences, Nucleic Acid, Sequence Homology, Nucleic Acid, Xenopus laevis, Receptor, Insulin biosynthesis, Receptor, Insulin genetics, Receptor, Insulin isolation & purification
- Abstract
The primary structure of human insulin-like growth factor II receptor, predicted from the complementary DNA sequence, reveals a transmembrane receptor molecule with a large extracellular domain made up of fifteen repeat sequences and a small region homologous to the collagen-binding domain of fibronectin. The structural and biochemical features of the IGF-II receptor appear identical to those of the cation-independent mannose-6-phosphate receptor.
- Published
- 1987
- Full Text
- View/download PDF
38. Human insulin-degrading enzyme shares structural and functional homologies with E. coli protease III.
- Author
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Affholter JA, Fried VA, and Roth RA
- Subjects
- Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA genetics, Escherichia coli enzymology, Genes, Humans, Molecular Sequence Data, Sequence Homology, Nucleic Acid, Endopeptidases genetics, Escherichia coli genetics, Insulysin genetics, Metalloendopeptidases, Peptide Hydrolases genetics
- Abstract
A proteinase with high affinity for insulin has been proposed to play a role in the cellular processing of this hormone. A complementary DNA (cDNA) coding for this enzyme has been isolated and sequenced. The deduced amino acid sequence of the enzyme contained the sequences of 13 peptides derived from the isolated protein. The cDNA could be transcribed in vitro to yield a synthetic RNA that in cell-free translations produced a protein that coelectrophoresed with the native proteinase and could be immunoprecipitated with monoclonal antibodies to this enzyme. The deduced sequence of this proteinase did not contain the consensus sequences for any of the known classes of proteinases (that is, metallo, cysteine, aspartic, or serine), but it did show homology to an Escherichia coli proteinase (called protease III), which also cleaves insulin and is present in the periplasmic space. Thus, these two proteins may be members of a family of proteases that are involved in intercellular peptide signaling.
- Published
- 1988
- Full Text
- View/download PDF
39. The amino-terminal domain of the v-fms oncogene product includes a functional signal peptide that directs synthesis of a transforming glycoprotein in the absence of feline leukemia virus gag sequences.
- Author
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Wheeler EF, Roussel MF, Hampe A, Walker MH, Fried VA, Look AT, Rettenmier CW, and Sherr CJ
- Subjects
- Amino Acid Sequence, Antigens, Polyomavirus Transforming, Antigens, Surface genetics, Cloning, Molecular, Gene Products, gag, Humans, Membrane Proteins genetics, Molecular Weight, Proto-Oncogene Mas, Proto-Oncogene Proteins genetics, Antigens, Viral, Tumor genetics, Cell Transformation, Viral, Oncogene Proteins, Viral genetics, Oncogenes, Protein Sorting Signals genetics, Retroviridae Proteins genetics
- Abstract
The nucleotide sequence of a 5' segment of the human genomic c-fms proto-oncogene suggested that recombination between feline leukemia virus and feline c-fms sequences might have occurred in a region encoding the 5' untranslated portion of c-fms mRNA. The polyprotein precursor gP180gag-fms encoded by the McDonough strain of feline sarcoma virus was therefore predicted to contain 34 v-fms-coded amino acids derived from sequences of the c-fms gene that are not ordinarily translated from the proto-oncogene mRNA. The (gP180gag-fms) polyprotein was cotranslationally cleaved near the gag-fms junction to remove its gag gene-coded portion. Determination of the amino-terminal sequence of the resulting v-fms-coded glycoprotein, gp120v-fms, showed that the site of proteolysis corresponded to a predicted signal peptidase cleavage site within the c-fms gene product. Together, these analyses suggested that the linked gag sequences may not be necessary for expression of a biologically active v-fms gene product. The gag-fms sequences of feline sarcoma virus strain McDonough and the v-fms sequences alone were inserted into a murine retroviral vector containing a neomycin resistance gene. Both constructs were biologically active when transfected into NIH 3T3 cells and produced morphologically transformed foci at equivalent efficiencies. When transfected into a cell line (psi 2) expressing complementary viral gene functions, G418-resistant (Neor) cells containing either of these vector DNAs produced high titers of transforming viruses. Analysis of proteins produced in cells containing the vector lacking gag gene sequences showed that gP180gag-fms was not synthesized, whereas normal levels of both immature gp120v-fms and mature gp140v-fms were detected. The glycoprotein was efficiently transported to the cell surface, and it retained wild-type tyrosine kinase activity. We conclude that a cryptic hydrophobic signal peptide sequence in v-fms was unmasked by gag deletion, thereby allowing the correct orientation and transport of the v-fms gene product within membranous organelles. It seems likely that the proteolytic cleavage of gP180gag-fms is mediated by signal peptidase and that the amino termini of gp140v-fms and the c-fms gene product are identical.
- Published
- 1986
- Full Text
- View/download PDF
40. Early steps initiating a degradation pathway in Escherichia coli. Characterization of the first intermediate.
- Author
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Wang SS and Fried VA
- Subjects
- Amino Acid Sequence, Carboxypeptidases metabolism, Electrophoresis, Polyacrylamide Gel, Peptide Chain Termination, Translational, Peptides metabolism, beta-Galactosidase metabolism, Escherichia coli metabolism, Galactosidases biosynthesis, beta-Galactosidase biosynthesis
- Abstract
Our previous studies demonstrated that a site-specific cleavage event initiates the degradation of large premature termination polypeptides of beta-galactosidase in Escherichia coli. We have isolated the first cleavage intermediate, the "B" polypeptide, by elution from sodium dodecyl sulfate-polyacrylamide gels. The NH2 terminus of this protein, determined by automated Edman degradation, was that of the wild-type molecule and thus established that the first cleavage event was at the COOH-terminal end. The sequence of the COOH-terminal end of the B polypeptide was determined by using the enzyme carboxypeptidase Y. Direct assignment of COOH-terminal residues was made by using o-phthaldialdehyde derivatization and the stoichiometry confirmed by a double-label analysis. The COOH-terminal end of the B polypeptide is at position 837 in the beta-galactosidase sequence. If a single endoproteolytic cleavage event was responsible, the cleavage would have occurred between 2 threonine residues (at positions 837 and 838) that are located within a hydrophobic domain. We have observed other covalent modifications that precede the appearance of the B polypeptide, but these do not appear to participate in signaling the first cleavage event. The structure of the COOH-terminal end of B suggests a high degree of specificity by the initial cleavage enzyme. We propose that this unique site serves as a specific signal and that exposure of this site to the specific cleavage enzyme controls the event initiating the degradation pathway.
- Published
- 1987
41. Membrane biogenesis. Evidence that a soluble chimeric polypeptide can serve as a precursor of a mutant lac permease in Escherichia coli.
- Author
-
Fried VA
- Subjects
- Cell Membrane drug effects, Cell Membrane enzymology, Enzyme Induction, Molecular Weight, Mutation, Peptides metabolism, Species Specificity, Thiogalactosides pharmacology, Escherichia coli enzymology, Escherichia coli Proteins, Membrane Transport Proteins biosynthesis, Monosaccharide Transport Proteins, Symporters
- Abstract
A mutant in the Escherichia coli lac permease, called Yf, appears to be defective in the biogenesis and proper assembly of this membrane protein. It was proposed that this defect led to the accumulation of a precursor of the mutant permease (Fried, V. A. (1977) J. Mol Biol. 114, 477-490). In this communication, evidence is presented that the lacYf mutant accumulates a novel lac-specific soluble polypeptide with a molecular weight of 87,000. Detected by double-label analysis on sodium dodecyl sulfate gels, and identified as a lac-specific polypeptide on a two-dimensional gel system, this polypeptide is immunoprecipitated by anti-transacetylase antibody. Pulse-chase experiments are consistent with the hypothesis that it is converted in vivo into a lac-specific membrane protein with an apparent molecular weight of 28,000, which appears to be the mutant lac permease. The results suggest that the 87,000-dalton soluble protein is a precursor of the mutant lac permease. It is proposed that this precursor is a polyprotein chimera containing both the lacY and lacA gene products.
- Published
- 1981
42. A novel mutant of the lac transport system of Escherichia coli.
- Author
-
Fried VA
- Subjects
- Biological Transport, Enzyme Induction, Escherichia coli enzymology, Genes, Membrane Transport Proteins metabolism, Operon, Escherichia coli genetics, Lactose metabolism, Membrane Transport Proteins genetics, Mutation
- Published
- 1977
- Full Text
- View/download PDF
43. Human endomembrane H+ pump strongly resembles the ATP-synthetase of Archaebacteria.
- Author
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Südhof TC, Fried VA, Stone DK, Johnston PA, and Xie XS
- Subjects
- Amino Acid Sequence, Archaea enzymology, Base Sequence, Biological Evolution, Humans, Macromolecular Substances, Molecular Sequence Data, Molecular Weight, Sequence Homology, Nucleic Acid, Archaea genetics, Bacteria genetics, Proton-Translocating ATPases genetics
- Abstract
Preparations of mammalian H+ pumps that acidify intracellular vesicles contain eight or nine polypeptides, ranging in size from 116 to 17 kDa. Biochemical analysis indicates that the 70- and 58-kDa polypeptides are subunits critical for ATP hydrolysis. The amino acid sequences of the major catalytic subunits (58 and 70 kDa) of the endomembrane H+ pump are unknown from animal cells. We report here the complete sequence of the 58-kDa subunit derived from a human kidney cDNA clone and partial sequences of the 70- and 58-kDa subunits purified from clathrin-coated vesicles of bovine brain. The amino acid sequences of both proteins strongly resemble the sequences of the corresponding subunits of the vacuolar H+ pumps of Archaebacteria, plants, and fungi. The archaebacterial enzyme is believed to use a H+ gradient to synthesize ATP. Thus, a common ancestral protein has given rise to a H+ pump that synthesizes ATP in one organism and hydrolyzes it in another and is highly conserved from prokaryotes to humans. The same pump appears to mediate the acidification of intracellular organelles, including coated vesicles, lysosomes, and secretory granules, as well as extracellular fluids such as urine.
- Published
- 1989
- Full Text
- View/download PDF
44. Limited proteolysis. Early steps in the processing of large premature termination fragments of beta-galactosidase in Escherichia coli.
- Author
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McKnight JL and Fried VA
- Subjects
- Antigen-Antibody Complex, Epitopes analysis, Kinetics, Macromolecular Substances, Molecular Weight, Mutation, Species Specificity, beta-Galactosidase biosynthesis, Escherichia coli enzymology, Galactosidases genetics, Peptide Chain Termination, Translational, beta-Galactosidase genetics
- Abstract
The mechanism by which large premature termination fragments of beta-galactosidase were degraded in Escherichia coli was studied using quantitative immunoprecipitation techniques. Two different lacZ nonsense mutants which produced apparent primary translation products of 96,000 and 109,000 daltons, respectively, were both shown to produce a second beta-galactosidase-related polypeptide of Mr = 90,000. These 90,000-dalton polypeptides appeared to be the same in both strains since they co-migrated when analyzed as a mixture on sodium dodecyl sulfate-polyacrylamide gels and were indistinguishable when analyzed by one-dimensional peptide mapping. Pulse-chase experiments established a stoichiometric precursor-product relationship between the primary mutant gene products (called the A polypeptides) and the common 90,000-dalton polypeptide (called the B polypeptide). No intermediates were detected between the A and B polypeptides. We propose that there is a common pathway for the degradation of these different large fragments of beta-galactosidase. According to this model, the first step would be a specific endoproteolytic cleavage of the primary translation product which produces the 90,000-dalton polypeptide as a common intermediate. The kinetic analysis demonstrated a first order decay of both A and B polypeptides but, surprisingly, the first order rate constant for the decay of A appeared dependent upon the induction regimen. This result suggested that degradation may possibly be autoregulated either by the intracellular level of A or by other intermediates in the degradation pathway.
- Published
- 1981
45. Differential reactivities of lysines in calmodulin complexed to phosphatase.
- Author
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Winkler MA, Fried VA, Merat DL, and Cheung WY
- Subjects
- Acetates metabolism, Acetic Acid, Acetic Anhydrides metabolism, Animals, Calcineurin, Calcium metabolism, Cattle, Calmodulin metabolism, Calmodulin-Binding Proteins metabolism, Lysine metabolism, Phosphoprotein Phosphatases metabolism, Phosphoric Monoester Hydrolases metabolism
- Abstract
Calmodulin and calmodulin complexed with calcineurin phosphatase were trace labeled with [3H]acetic anhydride and the incorporation of [3H]acetate into each epsilon-amino lysine of calmodulin was measured. The relative reactivities of calmodulin lysines were higher in the presence of Ca2+ than in the presence of EGTA, and the order was: Lys-75 greater than Lys-94 greater than Lys-148 greater than or equal to Lys-77 greater than Lys-13 greater than or equal to Lys-21 greater than Lys-30. The changes in relative reactivity implied a change in conformation. When calmodulin was complexed with the phosphatase, Lys-21, Lys-77, and Lys-148 were most protected, implying that these residues are at or near the interaction sites or are conformationally perturbed by the interaction. Lys-30 and Lys-75 were slightly protected, lysine 13 showed no change, while lysine 94 significantly increased in reactivity. Comparison with results obtained from myosin light chain kinase using a similar technique (Jackson, A. E., Carraway, K. L., III, Puett, D., and Brew, K. (1986) J. Biol. Chem. 261, 12226-12232) reveals that calmodulin may interact with each of the two enzymes similarly at or near Lys-21, Lys-75, and Lys-148; one difference with phosphatase is that complex formation also involved Lys-77. These findings suggest that calmodulin interacts differently with its target enzymes.
- Published
- 1987
46. Protein quantitation at the picomole level: an O-phthaldialdehyde-preTSK column-derivatization assay.
- Author
-
Fried VA, Ando ME, and Bell AJ
- Subjects
- Chemical Phenomena, Chemistry, Chromatography, High Pressure Liquid, Indicators and Reagents, Microchemistry, Molecular Weight, Spectrometry, Fluorescence, Aldehydes, Proteins analysis, o-Phthalaldehyde
- Abstract
A fluorescent protein assay was described wherein an isocratic high-performance liquid chromatography system was used to separate the o-phthaldialdehyde-derivatized proteins from interfering components. Using a small TSK guard column equilibrated in 0.1% sodium dodecyl sulfate, it was demonstrated that all proteins and peptides examined, containing more than 22 residues, coelute in the excluded volume and were resolved from fluorescent signals contributed by commonly used reagents. The assay was linear over a useful range of 3 ng to 1 microgram of protein and required less than 15 microliter of sample.
- Published
- 1985
- Full Text
- View/download PDF
47. Membrane Biogenesis: A Soluble Precursor of a Mutant LAC Permease in Escherichia Coli.
- Author
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Fried VA
- Published
- 1982
- Full Text
- View/download PDF
48. A mutant Ebg enzyme that converts lactose into an inducer of the lac operon.
- Author
-
Rolseth SJ, Fried VA, and Hall BG
- Subjects
- Escherichia coli metabolism, Membrane Transport Proteins metabolism, Methylgalactosides metabolism, Mutation, Repressor Proteins physiology, beta-Galactosidase genetics, Escherichia coli genetics, Galactosidases metabolism, Lac Operon, Lactose metabolism, beta-Galactosidase metabolism
- Abstract
Lactose is not itself an inducer of the lac operon, nor is it converted to an inducer by ebg+ beta-galactosidase of Escherichia coli. We report here the isolation of a mutant Ebg beta-galactosidase which is capable of converting lactose into an inducer of the lac operon.
- Published
- 1980
- Full Text
- View/download PDF
49. Ubiquitin has intrinsic proteolytic activity: implications for cellular regulation.
- Author
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Fried VA, Smith HT, Hildebrandt E, and Weiner K
- Subjects
- Antibodies, Monoclonal, Enzyme Stability, Hot Temperature, Humans, Kinetics, Ubiquitins isolation & purification, Erythrocytes metabolism, Peptide Hydrolases metabolism, Ubiquitins blood
- Abstract
Ubiquitin is a protein of 76 amino acids found in every eukaryotic cell. Although ubiquitin is implicated in ATP-dependent nonlysosomal protein degradation and is also conjugated to specific cellular proteins, the role played by ubiquitin in cellular events has not been defined. We report that purified ubiquitin has intrinsic proteolytic activity and demonstrate that this activity is comparable to that of other well-characterized proteases. Monoclonal antibodies specific to ubiquitin inhibit proteolysis. Ubiquitin has protease activity over a broad pH range with an optimum at pH 8.0. It is stimulated by Ca2+ and is inhibited by high concentrations of phenylmethylsulfonyl fluoride and diisopropyl fluorophosphate. Ubiquitin will cleave proteins at a limited number of sites. We propose that the ubiquitination of a protein can convert that protein into an ad hoc specific protease and models are presented as to how this can play a role in regulating a variety of cellular events.
- Published
- 1987
- Full Text
- View/download PDF
50. The structure of cytochrome b561, a secretory vesicle-specific electron transport protein.
- Author
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Perin MS, Fried VA, Slaughter CA, and Südhof TC
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Blotting, Northern, Cattle, Chromatography, Cloning, Molecular, Cytochrome b Group isolation & purification, Cytochrome b Group metabolism, DNA genetics, Electron Transport, Molecular Sequence Data, RNA analysis, Chromaffin Granules analysis, Chromaffin System analysis, Cytochrome b Group genetics
- Abstract
Cytochrome b561 is a transmembrane electron transport protein that is specific to a subset of secretory vesicles containing catecholamines and amidated peptides. This protein is thought to supply reducing equivalents to the intravesicular enzymes dopamine-beta-hydroxylase and alpha-peptide amidase. We have purified cytochrome b561 from bovine adrenal chromaffin granules by reverse phase chromatography and have determined internal amino acid sequences from peptides. Complementary oligonucleotides were used to isolate two cDNA clones from a bovine brain library. The structure predicted by the sequences of these cDNAs suggests a highly hydrophobic protein of 273 amino acids which spans the membrane six times with little extramembranous sequence. Cytochrome b561 is not homologous to any other cytochrome and thus represents a new class of electron carriers. RNA blotting experiments indicate that cytochrome b561 is expressed in the adrenal medulla and all brain regions of the cow, but not in visceral organs. This result agrees well with the putative function of this unique cytochrome and with the notion that this protein is localized to large dense-core synaptic vesicles.
- Published
- 1988
- Full Text
- View/download PDF
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