42 results on '"Karell, K."'
Search Results
2. Major histocompatibility complex (MHC)-linked microsatellite markers in a founder population
- Author
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Karell, K., Klinger, N., Holopainen, P., Levo, A., and Partanen, J.
- Published
- 2000
3. Genetic dissection between silent and clinically diagnosed symptomatic forms of coeliac disease in multiplex families
- Author
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Mustalahti, K., Holopainen, P., Karell, K., Mäki, M., and Partanen, J.
- Published
- 2002
- Full Text
- View/download PDF
4. Additional factor in some HLA DR3/DQ2 haplotypes confers a fourfold increased genetic risk of celiac disease
- Author
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BOLOGNESI E, KARELL K, PERCOPO S, COTO I, MANTOVANI V, SUORANIEMI E, PARTANEN J, MUSTALAHTI K, MAKI M, MOMIGLIANORICHIARDI P., GRECO, LUIGI, Bolognesi, E, Karell, K, Percopo, S, Coto, I, Greco, Luigi, Mantovani, V, Suoraniemi, E, Partanen, J, Mustalahti, K, Maki, M, and Momiglianorichiardi, P.
- Published
- 2003
5. Hla types in celiac disease patients not carrying the DQA1*05-DQB1*02 (DQ2) heterodimer: results from the european genetics cluster on celiac disease
- Author
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KARELL K, LOUKA AS, MOODIE SJ, ASCHER H, CLOT F, CICLITIRA PJ, SOLLID LM, PARTANEN J., GRECO, LUIGI, Karell, K, Louka, A, Moodie, Sj, Ascher, H, Clot, F, Greco, Luigi, Ciclitira, Pj, Sollid, Lm, and Partanen, J.
- Published
- 2003
6. A collaborative European search for non-DQA1*05-DQB1*02 celiac disease loci on HLA-DR3 haplotypes: analysis of transmission from homozygous parents
- Author
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LOUKA AS, MOODIE SJ, KARELL K, BOLOGNESI E, ASCHER H, MOMIGLIANORICHIARDI P, PARTANEN J, CICLITIRA PJ, SOLLID L.M., GRECO, LUIGI, Louka, A, Moodie, Sj, Karell, K, Bolognesi, E, Ascher, H, Greco, Luigi, Momiglianorichiardi, P, Partanen, J, Ciclitira, Pj, and Sollid, L. M.
- Published
- 2003
7. Benthic conditions around a historic shipwreck: Vrouw Maria (1771) in the northern Baltic proper
- Author
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Ruuskanen, A.T., primary, Kraufvelin, P., additional, Alvik, R., additional, Díaz, E.R., additional, Honkonen, J., additional, Kanerva, J., additional, Karell, K., additional, Kekäläinen, P., additional, Lappalainen, J., additional, Mikkola, R., additional, Mustasaari, T., additional, Nappu, N., additional, Nieminen, A., additional, Roininen, J., additional, and Svahnbäck, K., additional
- Published
- 2015
- Full Text
- View/download PDF
8. Cost-effective HLA typing with tagging SNPs predicts celiac disease risk haplotypes in the Finnish, Hungarian, and Italian populations
- Author
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Koskinen, L, Romanos, J, Kaukine, K, Mustalahti, K, Korponay Szabo, I, Barisani, D, Bardella, M, Ziberna, F, Vatta, S, Széles, G, Pocsai, Z, Karell, K, Haimila, K, Adány, R, Not, T, Ventura, A, Mäki, M, Partanen, J, Wijmenga, C, Saavalainen, P, Bardella, MT, Saavalainen, P., BARISANI, DONATELLA, Koskinen, L, Romanos, J, Kaukine, K, Mustalahti, K, Korponay Szabo, I, Barisani, D, Bardella, M, Ziberna, F, Vatta, S, Széles, G, Pocsai, Z, Karell, K, Haimila, K, Adány, R, Not, T, Ventura, A, Mäki, M, Partanen, J, Wijmenga, C, Saavalainen, P, Bardella, MT, Saavalainen, P., and BARISANI, DONATELLA
- Abstract
Human leukocyte antigen (HLA) genes, located on chromosome 6p21.3, have a crucial role in susceptibility to various autoimmune and inflammatory diseases, such as celiac disease and type 1 diabetes. Certain HLA heterodimers, namely DQ2 (encoded by the DQA1*05 and DQB1*02 alleles) and DQ8 (DQA1*03 and DQB1*0302), are necessary for the development of celiac disease. Traditional genotyping of HLA genes is laborious, time-consuming, and expensive. A novel HLA-genotyping method, using six HLA-tagging single-nucleotide polymorphisms (SNPs) and suitable for high-throughput approaches, was described recently. Our aim was to validate this method in the Finnish, Hungarian, and Italian populations. The six previously reported HLA-tagging SNPs were genotyped in patients with celiac disease and in healthy individuals from Finland, Hungary, and two distinct regions of Italy. The potential of this method was evaluated in analyzing how well the tag SNP results correlate with the HLA genotypes previously determined using traditional HLA-typing methods. Using the tagging SNP method, it is possible to determine the celiac disease risk haplotypes accurately in Finnish, Hungarian, and Italian populations, with specificity and sensitivity ranging from 95% to 100%. In addition, it predicts homozygosity and heterozygosity for a risk haplotype, allowing studies on genotypic risk effects. The method is transferable between populations and therefore suited for large-scale research studies and screening of celiac disease among high-risk individuals or at the population level. © 2009 Springer-Verlag.
- Published
- 2009
9. Role of sea-ice biota in nutrient and organic material cycles in the northern Baltic Sea
- Author
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Kuparinen, J, Kuosa, H, Andersson, Agneta, Autio, R, Granskog, MA, Ikävalko, J, Kaartokallio, H, Karell, K, Leskinen, E, Piiparinen, J, Rintala, J-M, Tuomainen, J, Kuparinen, J, Kuosa, H, Andersson, Agneta, Autio, R, Granskog, MA, Ikävalko, J, Kaartokallio, H, Karell, K, Leskinen, E, Piiparinen, J, Rintala, J-M, and Tuomainen, J
- Published
- 2007
10. Genetic dissection between coeliac disease and dermatitis herpetiformis in sib pairs
- Author
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KARELL, K., primary, KORPONAY-SZABO, I., additional, SZALAI, Zs., additional, HOLOPAINEN, P., additional, MUSTALAHTI, K., additional, COLLIN, P., additional, MAKI, M., additional, and PARTANEN, J., additional
- Published
- 2002
- Full Text
- View/download PDF
11. Not all HLA DR3 DQ2 Haplotypes Confer Equal Susceptibility to Coeliac Disease: Transmission Analysis in Families
- Author
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Karell, K., primary, Holopainen, P., additional, Mustalahti, K., additional, Collin, P., additional, Mäki, M., additional, and Partanen, J., additional
- Published
- 2002
- Full Text
- View/download PDF
12. Major histocompatibility complex (MHC)linked microsatellite markers in a founder population.
- Author
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Karell, K., Klinger, N., Holopainen, P., Levo, A., and Partanen, J.
- Subjects
- *
HISTOCOMPATIBILITY antigens , *MICROSATELLITE repeats - Abstract
The Finnish population is genetically relatively homogeneous and has a narrow gene pool as a result of founder effect followed by rapid population growth. We here demonstrate that microsatellite markers are highly informative tools for major histocompatibility complex (MHC) analysis in this population. First, no variation in 12 MHC-linked microsatellites could be observed in certain CYP21-deficient chromosomes, which as a result of founder effect most likely derived from common ancestors. Second, amongst 131 Finnish chromosomes, some, but not all, apparently HLA-identical chromosomes also carried identical microsatellites, suggesting that these loci could be applied for identification of haplotypes which have a relatively recent shared origins. Finally, when the microsatellites were studied between ethnically more distant individuals (Finnish vs. non-Finnish), who were matched for the HLA alleles, much more differences were observed. This showed that the similarity in microsatellites was population specific. The microsatellite typing can therefore be informative in fine mapping MHC-linked susceptibility genes and can help in matching bone marrow transplants in isolated populations. Linkage disequilibrium was found to be much higher in the MHC than in another region (5q31) of similar size, indicating that there may be particular mechanisms keeping the MHC haplotypes conserved. [ABSTRACT FROM AUTHOR]
- Published
- 2000
- Full Text
- View/download PDF
13. Cost-effective HLA typing with tagging SNPs predicts celiac disease risk haplotypes in the Finnish, Hungarian, and Italian populations
- Author
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Markku Mäki, Róza Ádány, Alessandro Ventura, Cisca Wijmenga, Päivi Saavalainen, Kati Karell, Katri Kaukinen, György Széles, Serena Vatta, Lotta L. E. Koskinen, Katri Haimila, K. Mustalahti, Zsuzsa Pocsai, Maria Teresa Bardella, Fabiana Ziberna, Ilma Rita Korponay-Szabó, Donatella Barisani, Tarcisio Not, Jihane Romanos, Jukka Partanen, Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI), Koskinen, L, Romanos, J, Kaukinen, K, Mustalahti, K, KORPONAY SZABO, I, Barisani, D, Bardella, Mt, Ziberna, F, Vatta, Serena, Széles, G, Pocsai, Z, Karell, K, Haimila, K, Adány, R, Not, Tarcisio, Ventura, Alessandro, Mäki, M, Partanen, J, Wijmenga, C, Saavalainen, P., Kaukine, K, Korponay Szabo, I, Bardella, M, Vatta, S, Not, T, Ventura, A, and Saavalainen, P
- Subjects
HETERODIMER ,Immunology ,Single-nucleotide polymorphism ,Disease ,Human leukocyte antigen ,SUSCEPTIBILITY ,Biology ,DIAGNOSIS ,Polymorphism, Single Nucleotide ,FAMILIES ,DQ ,HLA Antigens ,Genotype ,PROGRAM ,Genetics ,Humans ,Celiac disease ,Genetic Testing ,Allele ,Genotyping ,EUROPEAN GENETICS CLUSTER ,Haplotype ,BIO/13 - BIOLOGIA APPLICATA ,nutritional and metabolic diseases ,ASSOCIATION ,ALLELES ,Tag SNP ,HLA ,Haplotypes ,Tagging SNP ,SINGLE NUCLEOTIDE POLYMORPHISMS ,celiac disease, HLA - Abstract
Human leukocyte antigen (HLA) genes, located on chromosome 6p21.3, have a crucial role in susceptibility to various autoimmune and inflammatory diseases, such as celiac disease and type 1 diabetes. Certain HLA heterodimers, namely DQ2 (encoded by the DQA1*05 and DQB1*02 alleles) and DQ8 (DQA1*03 and DQB1*0302), are necessary for the development of celiac disease. Traditional genotyping of HLA genes is laborious, time-consuming, and expensive. A novel HLA-genotyping method, using six HLA-tagging single-nucleotide polymorphisms (SNPs) and suitable for high-throughput approaches, was described recently. Our aim was to validate this method in the Finnish, Hungarian, and Italian populations. The six previously reported HLA-tagging SNPs were genotyped in patients with celiac disease and in healthy individuals from Finland, Hungary, and two distinct regions of Italy. The potential of this method was evaluated in analyzing how well the tag SNP results correlate with the HLA genotypes previously determined using traditional HLA-typing methods. Using the tagging SNP method, it is possible to determine the celiac disease risk haplotypes accurately in Finnish, Hungarian, and Italian populations, with specificity and sensitivity ranging from 95% to 100%. In addition, it predicts homozygosity and heterozygosity for a risk haplotype, allowing studies on genotypic risk effects. The method is transferable between populations and therefore suited for large-scale research studies and screening of celiac disease among high-risk individuals or at the population level. © 2009 Springer-Verlag.
- Published
- 2009
14. What are the views of Quebec and Ontario citizens on the tiebreaker criteria for prioritizing access to adult critical care in the extreme context of a COVID-19 pandemic?
- Author
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Calderon Ramirez C, Farmer Y, Frolic A, Bravo G, Gaucher NO, Payot A, Opatrny L, Poirier D, Dahine J, L'Espérance A, Downar J, Tanuseputro P, Rousseau LM, Dumez V, Descôteaux A, Dallaire C, Laporte K, and Bouthillier ME
- Subjects
- Adult, Humans, Ontario epidemiology, Quebec, Pandemics, Critical Care, COVID-19 epidemiology
- Abstract
Background: The prioritization protocols for accessing adult critical care in the extreme pandemic context contain tiebreaker criteria to facilitate decision-making in the allocation of resources between patients with a similar survival prognosis. Besides being controversial, little is known about the public acceptability of these tiebreakers. In order to better understand the public opinion, Quebec and Ontario's protocols were presented to the public in a democratic deliberation during the summer of 2022., Objectives: (1) To explore the perspectives of Quebec and Ontario citizens regarding tiebreakers, identifying the most acceptable ones and their underlying values. (2) To analyze these results considering other public consultations held during the pandemic on these criteria., Methods: This was an exploratory qualitative study. The design involved an online democratic deliberation that took place over two days, simultaneously in Quebec and Ontario. Public participants were selected from a community sample which excluded healthcare workers. Participants were first presented the essential components of prioritization protocols and their related issues (training session day 1). They subsequently deliberated on the acceptability of these criteria (deliberation session day 2). The deliberation was then subject to thematic analysis., Results: A total of 47 participants from the provinces of Quebec (n = 20) and Ontario (n = 27) took part in the online deliberation. A diverse audience participated excluding members of the healthcare workforce. Four themes were identified: (1) Priority to young patients - the life cycle - a preferred tiebreaker; (2) Randomization - a tiebreaker of last resort; (3) Multiplier effect of most exposed healthcare workers - a median acceptability tiebreaker, and (4) Social value - a less acceptable tiebreaker., Conclusion: Life cycle was the preferred tiebreaker as this criterion respects intergenerational equity, which was considered relevant when allocating scarce resources to adult patients in a context of extreme pandemic. Priority to young patients is in line with other consultations conducted around the world. Additional studies are needed to further investigate the public acceptability of tiebreaker criteria., (© 2024. Crown.)
- Published
- 2024
- Full Text
- View/download PDF
15. Reactive nano-patterns in triple structured bio-inspired honeycomb films as a clickable platform.
- Author
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Marcasuzaa P, Pearson S, Bosson K, Pessoni L, Dupin JC, and Billon L
- Abstract
A hierarchically structured platform was obtained from directed self-assembly of a poly(styrene)-b-poly(4-vinylbenzylchloride) (PS-b-PVBC) block copolymer (BCP) during breath figure (BF) templating. The BF process using a water/ethanol atmosphere gave a unique double porosity in which hexagonally arranged micron-sized pores were encircled by a secondary population of smaller, nano-sized pores. A third level of structuration was simultaneously introduced between the pores by BCP self-assembly to form out-of-the-plane nano-cylinders, offering a film with an unprecedented triple structure, which could be used as a reactive platform. Indeed the surface nano-domains of VBC were exploited as reactive nano-patterns for site-specific chemical functionalization.
- Published
- 2018
- Full Text
- View/download PDF
16. Spatial and temporal variations in the atmospheric concentrations of "Stockholm Convention" organochlorine pesticides in Kuwait.
- Author
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Gevao B, Porcelli M, Rajagopalan S, Krishnan D, Martinez-Guijarro K, Alshemmari H, Bahloul M, and Zafar J
- Abstract
The study reports fortnightly atmospheric concentrations of organochlorine pesticides concomitantly measured at an urban, "industrial" and a remote location over a twelve month period in Kuwait to examine seasonal variability and urban-rural concentration gradients. The average±SD (and range) of the ΣOC concentrations measured throughout the study period in decreasing order were urban, 505±305 (range, 33-1352) pgm
-3 , remote, 204±124 (4.5-556) pgm-3 , and "industrial" 155±103 (8.8-533) pgm-3 . The concentrations of most OCs measured in this study, except for DDT and its metabolites, were higher at urban locations relative to their concentrations at remote location, in line with the literature on POPs regarding urban conurbations being sources of industrial chemicals. The most abundant pesticides measured throughout this study were dieldrin, pentachlorobenzene, hexachlorobenzene, ΣDDTs, ΣHCHs, and oxychlordane. Hexachlorobenzene concentrations were generally higher than those of pentachlorobenzene and are both strongly negatively correlated with temperature (p<0.05) at all sampling locations. Mean summertime concentrations were higher for hexachlorocyclohexanes, chlordanes, dieldrin, and DDT isomers, except for pp-DDT. This may suggest that concentrations of these compounds may be driven by temperature., (Copyright © 2017 Elsevier B.V. All rights reserved.)- Published
- 2018
- Full Text
- View/download PDF
17. Seasonal variations in the atmospheric concentrations of polychlorinated biphenyls in Kuwait.
- Author
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Gevao B, Porcelli M, Rajagopalan S, Krishnan D, Martinez-Guijarro K, Alshemmari H, Bahloul M, and Zafar J
- Subjects
- Air Pollution statistics & numerical data, Atmosphere chemistry, Kuwait, Seasons, Air Pollutants analysis, Environmental Monitoring, Polychlorinated Biphenyls analysis
- Abstract
The spatial and temporal variations in the atmospheric concentrations of PCBs were concomitantly measured at several sites over a twelve-month period in Kuwait to examine seasonal variability and urban-rural concentration gradients using two sampling methods. The annual mean (and range) of ∑PCB concentrations measured using high volume samplers was 10.8 (1.2-32) pg m
-3 at the remote site and 39.4 (1.1-128) pg m-3 at the urban site. The median concentrations of ΣPCBs at the urban location (30.3 pg m-3 ) was significantly higher (p < 0.001) than that measured at the remote location (8.6 pg m-3 ) consistent with the view that urban centers are an important net source of these compounds to the environment. Passive sampler derived concentrations across the country showed a uniform distribution except at a few locations in the vicinity of suspected sources where elevated concentrations were measured. As with active sampling data, the concentrations measured using passive samplers were higher in urban areas (range, 4-78 pg/m3 ) compared to remote sites (range, 2.2-17 pg/m3 ). The concentrations measured at some urban sites correlated extremely well with mean temperature during the deployment period whereas temperature correlations with measured concentrations were negative at remote and semi-rural sites suggesting that air-surface exchange maybe a key driving mechanism of the current levels of PCBs in Kuwait., (Copyright © 2017 Elsevier Ltd. All rights reserved.)- Published
- 2017
- Full Text
- View/download PDF
18. Diversity-oriented synthesis and cytotoxic activity evaluation of biaryl-containing macrocycles.
- Author
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Pérez-Labrada K, Cruz-Mendoza MA, Chávez-Riveros A, Hernández-Vázquez E, Torroba T, and Miranda LD
- Subjects
- Antineoplastic Agents chemistry, Biphenyl Compounds chemistry, Cell Line, Cell Proliferation drug effects, Crystallography, X-Ray, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, Humans, Macrocyclic Compounds chemistry, Models, Molecular, Molecular Structure, Structure-Activity Relationship, Antineoplastic Agents chemical synthesis, Antineoplastic Agents pharmacology, Biphenyl Compounds chemical synthesis, Biphenyl Compounds pharmacology, Macrocyclic Compounds chemical synthesis, Macrocyclic Compounds pharmacology
- Abstract
Synthesis of biaryl-containing macrocycles has been carried out through a four-step approach comprising two Ugi four component reactions and a Suzuki-Miyaura macrocyclization. This protocol allowed the synthesis of 12- and 14-membered macrocycles. Cytotoxic activity evaluation showed that some of the molecules were effective against leukemia, glioblastoma and lung cancer cell lines (IC
50 = 4.0, 5.9 and 7.6, respectively).- Published
- 2017
- Full Text
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19. Atmospheric concentration of polychlorinated dibenzo-p-dioxins, polychlorinated dibenzofurans (PCDD/Fs) and dioxin-like polychlorinated biphenyls (dl-PCBs) at Umm-Al-Aish oil field-Kuwait.
- Author
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Martínez-Guijarro K, Ramadan A, and Gevao B
- Subjects
- Kuwait, Air Pollutants analysis, Dibenzofurans, Polychlorinated analysis, Oil and Gas Fields, Polychlorinated Biphenyls analysis, Polychlorinated Dibenzodioxins analysis
- Abstract
A sampling campaign was carried out to assess the impact of the oil field activities on the concentrations of polychlorinated dibenzo-p-dioxins, polychlorinated dibenzofurans (PCDD/Fs) and dioxin-like polychlorinated biphenyls (dl-PCBs) in ambient air at Umm Al-Aish oil field in northern Kuwait. Sixteen samples were collected from March 2014 to January 2015. The concentrations of ΣPCDD/Fs were relatively high (33.6-586 fg I-TEQ/m
3 ; median: 94.7 fg I-TEQ/m3 ; 31.2 to 516 fg WHO-TEQ2005 /m3 ; median: 83.7 fg WHO-TEQ2005 /m3 ) compared to those of dl-PCBs (3.9-36.8 WHO-TEQ2005 /m3 ; median 9.9 WHO-TEQ2005 /m3 ). A unique PCDD/F profile that was not previously reported was found. Further investigations should be conducted to establish whether the dioxin profile found in this study is specific for the desulfurization facility located in the study area or from oil flaring in the oil fields located upstream of the study area. The findings suggest that the oil field activities have a significant impact on the PCDD/F concentration in ambient air but a low or negligible influence on dl-PCBs' levels., (Copyright © 2016 Elsevier Ltd. All rights reserved.)- Published
- 2017
- Full Text
- View/download PDF
20. Responses to Bacteria, Virus, and Malaria Distinguish the Etiology of Pediatric Clinical Pneumonia.
- Author
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Valim C, Ahmad R, Lanaspa M, Tan Y, Acácio S, Gillette MA, Almendinger KD, Milner DA Jr, Madrid L, Pellé K, Harezlak J, Silterra J, Alonso PL, Carr SA, Mesirov JP, Wirth DF, Wiegand RC, and Bassat Q
- Subjects
- Biomarkers blood, Child, Preschool, Diagnosis, Differential, Female, Haptoglobins metabolism, Humans, Immunoassay, Infant, Malaria complications, Male, Matrix Metalloproteinase 1 blood, Pneumonia blood, Pneumonia etiology, Pneumonia, Bacterial blood, Receptors, Interleukin-10 blood, Receptors, Tumor Necrosis Factor, Type II blood, Reproducibility of Results, Sensitivity and Specificity, Malaria blood, Pneumonia, Viral blood
- Abstract
Rationale: Plasma-detectable biomarkers that rapidly and accurately diagnose bacterial infections in children with suspected pneumonia could reduce the morbidity of respiratory disease and decrease the unnecessary use of antibiotic therapy., Objectives: Using 56 markers measured in a multiplexed immunoassay, we sought to identify proteins and protein combinations that could discriminate bacterial from viral or malarial diagnoses., Methods: We selected 80 patients with clinically diagnosed pneumonia (as defined by the World Health Organization) who also met criteria for bacterial, viral, or malarial infection based on clinical, radiographic, and laboratory results. Ten healthy community control subjects were enrolled to assess marker reliability. Patients were subdivided into two sets: one for identifying potential markers and another for validating them., Measurements and Main Results: Three proteins (haptoglobin, tumor necrosis factor receptor 2 or IL-10, and tissue inhibitor of metalloproteinases 1) were identified that, when combined through a classification tree signature, accurately classified patients into bacterial, malarial, and viral etiologies and misclassified only one patient with bacterial pneumonia from the validation set. The overall sensitivity and specificity of this signature for the bacterial diagnosis were 96 and 86%, respectively. Alternative combinations of markers with comparable accuracy were selected by support vector machine and regression models and included haptoglobin, IL-10, and creatine kinase-MB., Conclusions: Combinations of plasma proteins accurately identified children with a respiratory syndrome who were likely to have bacterial infections and who would benefit from antibiotic therapy. When used in conjunction with malaria diagnostic tests, they may improve diagnostic specificity and simplify treatment decisions for clinicians.
- Published
- 2016
- Full Text
- View/download PDF
21. Chemical interaction of water molecules with framework Al in acid zeolites: a periodic ab initio study on H-clinoptilolite.
- Author
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Valdiviés-Cruz K, Lam A, and Zicovich-Wilson CM
- Abstract
Periodic quantum-chemistry methods as implemented in the CRYSTAL14 code were considered to analyse the interaction of acid clinoptilolite with water. Initially adsorbed molecules hydrolyse the Al-O bonds, giving rise to defective dealuminated materials. A suitable and representative periodic model of the partially disordered hydrated H-zeolite is the primitive cell (18 T sites) of a decahydrated trialuminated structure of HEU topology. The water distribution inside the material cavities was initially investigated. The model considered for further dealumination was the most stable one from those generated through a combined force field Monte Carlo and ab initio optimization strategy. Optimizations and energy estimations were made at the hybrid DFT level of theory (PBE0 functional) with an atomic basis set of VDZP quality. The energetics of the different pathways involved in the dealumination process was addressed by considering the Gibbs free energy with thermal and zero-point corrections through phonon analysis. It arises that hydrated models exhibit protonated water clusters stabilized by different kinds of H-bonds. The first Al extraction is slightly more energetically favourable from T3 than T2 sites, but at the same time the latter is more probable owing to its larger Al population. However, concerning the second dealumination step, it is more favourable removing the Al atom from both remaining sites after a starting abstraction from T2 rather than T3. These facts determine that the most probable overall pathways go through a first Al removal from T2. The agreement with experimental results is discussed.
- Published
- 2015
- Full Text
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22. Combinatorial multicomponent access to natural-products-inspired peptidomimetics: discovery of selective inhibitors of microbial metallo-aminopeptidases.
- Author
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Méndez Y, Pérez-Labrada K, González-Bacerio J, Valdés G, de los Chávez MÁ, Osuna J, Charli JL, Pascual I, and Rivera DG
- Subjects
- Protease Inhibitors chemistry, Aminopeptidases antagonists & inhibitors, Biological Products chemistry, Metalloproteins antagonists & inhibitors, Peptidomimetics chemistry, Protease Inhibitors pharmacology
- Abstract
The development of selective inhibitors of microbial metallo-aminopeptidases is an important goal in the pursuit of antimicrobials for therapeutic applications. Herein, we disclose a combinatorial approach relying on two Ugi reactions for the generation of peptidomimetics inspired by natural metallo-aminopeptidase inhibitors. The library was screened for inhibitory activity against the neutral metallo-aminopeptidase of Escherichia coli (ePepN) and the porcine kidney cortex metallo-aminopeptidase (pAPN), which was used as a model of the M1-aminopeptidases of mammals. Six compounds showed typical dose-response inhibition profiles toward recombinant ePepN, with two of them being very potent and highly selective for ePepN over pAPN. Another compound showed moderate ePepN inhibition but total selectivity for this bacterial enzyme over its mammalian orthologue at concentrations of physiological relevance. This strategy proved to be useful for the identification of lead compounds for further optimization and development., (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2014
- Full Text
- View/download PDF
23. Periodic quantum chemical studies on anhydrous and hydrated acid clinoptilolite.
- Author
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Valdiviés Cruz K, Lam A, and Zicovich-Wilson CM
- Subjects
- Computer Simulation, Hydrogen Bonding, Models, Chemical, Quantum Theory, Water chemistry, Zeolites chemistry
- Abstract
Periodic quantum chemistry methods as implemented in the crystal09 code were considered to study acid clinoptilolite (HEU framework type), both anhydrous and hydrated. The most probable location of acid sites and water molecules together with other structural details has been the object of particular attention. Calculations were performed at hybrid and pristine DFT levels of theory with a VDZP quality basis set in order to compare performances. It arises that PBE0 provides the best agreement with experimental data as concerns structural features and the most stable Al distribution in the framework. The role of the water molecule distribution in the stability of the systems, the most probable structure that they induce in the material, and their eventual influence on further chemical modification processes, such as dealumination, are discussed in detail. Results show that, apart from the usually considered interactions of water molecules with the zeolite framework, that is, a H-bond with Brönsted acid sites and coordination with framework Al as Lewis ones, it is necessary to consider cooperation of other weaker effects so as to fully understand the hydration effect in this kind of materials.
- Published
- 2014
- Full Text
- View/download PDF
24. Multicomponent ligation of steroids: creating diversity at the linkage moiety of bis-spirostanic conjugates by Ugi reactions.
- Author
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Pérez-Labrada K, Méndez Y, Brouard I, and Rivera DG
- Subjects
- Chemistry, Pharmaceutical, Molecular Structure, Small Molecule Libraries chemistry, Spirostans chemistry, Stereoisomerism, Combinatorial Chemistry Techniques methods, Small Molecule Libraries chemical synthesis, Spirostans chemical synthesis
- Abstract
The diversity-oriented synthesis of novel bis-spirostanic conjugates utilizing two different Ugi four-component reactions (Ugi-4CR) is described. Spirostanic steroids were functionalized with Ugi-reactive groups, that is, amines, isocyanides, and carboxylic acids, and next were subjected to multicomponent ligation approaches leading to bis-steroidal conjugates featuring pseudo-peptidic and heterocyclic linkage moieties. Both the classic Ugi-4CR and its hydrazoic acid variant were implemented, proving good efficiency for the ligation of isocyanosteroids to spirostanic acids and equatorial amines. Axially oriented amines showed poorer results, although model studies proved that chemical efficiency could be significantly improved while increasing reaction times. Overall, the method comprises the rapid generation of molecular diversity at the bis-steroid linkage moiety and, consequently, shows promise toward the production of combinatorial libraries of bis-spirostanes for biological screening.
- Published
- 2013
- Full Text
- View/download PDF
25. Carbohydrate-steroid conjugation by Ugi reaction: one-pot synthesis of triple sugar/pseudo-peptide/spirostane hybrids.
- Author
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Rivera DG, Pérez-Labrada K, Lambert L, Dörner S, Westermann B, and Wessjohann LA
- Subjects
- Chemistry Techniques, Synthetic, Tetrazoles chemistry, Carbohydrates chemical synthesis, Carbohydrates chemistry, Peptidomimetics chemistry, Spirostans chemistry
- Abstract
The one-pot synthesis of novel molecular chimeras incorporating sugar, pseudo-peptide, and steroidal moieties is described. For this, a new carbohydrate-steroid conjugation approach based on the Ugi four-component reaction was implemented for the ligation of glucose and chacotriose to spirostanic steroids. The approach proved wide substrate scope, as both mono and oligosaccharides functionalized with amino, carboxy, and isocyano groups were conjugated to steroidal substrates in an efficient, multicomponent manner. Two alternative strategies based on the hydrazoic acid variant of the Ugi reaction were employed for the synthesis of tetrazole-based chacotriose-diosgenin conjugates resembling naturally occurring spirostan saponins. This is the first time that triple sugar/pseudo-peptide/steroid hybrids are produced, thus opening up an avenue of opportunities for applications in drug discovery and biological chemistry., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2012
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26. Effect of C-ring modifications on the cytotoxicity of spirostan saponins and related glycosides.
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Pérez-Labrada K, Brouard I, Estévez S, Marrero MT, Estévez F, and Rivera DG
- Subjects
- Cell Survival drug effects, Glycosides chemical synthesis, Glycosides toxicity, HL-60 Cells, Humans, Saponins chemical synthesis, Saponins toxicity, Structure-Activity Relationship, Glycosides chemistry, Saponins chemistry, Spirostans chemistry
- Abstract
Twelve C-ring modified spirostanyl glycosides were synthesized and evaluated for their cytotoxicity against the human myeloid leukemia cell line (HL-60). With the aim of assessing the influence of the hydrophobic character, the conformational flexibility and the stereochemistry of the C-ring functionalities on the cytotoxic activity, a variety of spirostanic aglycones incorporating methylene, methoxyl, α,β-unsaturated ketone and lactone groups were subjected to a linear glycosylation strategy leading to glycosides derived from the 3,6-dipivaloylated β-D-glucoside and the β-chacotrioside moieties. The 3,6-dipivaloylated spirostanyl β-D-glucosides showed moderate to good cytotoxic activity against HL-60, but no significant cytotoxicity against benign blood cells. However, the cytotoxicity of spirostanyl β-chacotriosides was highly dependent on the nature of the C-ring functional groups of the steroidal aglycones. Actually, the chacotrioside-based saponins either with no functionality or bearing a hydrophobic methylene group at C-12 were the most cytotoxic ones against both HL-60 and benign blood cells. On the other hand, the incorporation of very polar functionalities and the opening of the ring C with the consequent loss of rigidity led to a significant drop in the cytotoxicity against HL-60. These results confirm that spirostanyl β-chacotriosides including very lipophilic aglycones are the most cytotoxic ones among their congeners., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2012
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27. Multicomponent synthesis of Ugi-type ceramide analogues and neoglycolipids from lipidic isocyanides.
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Pérez-Labrada K, Brouard I, Méndez I, and Rivera DG
- Subjects
- Magnetic Resonance Spectroscopy, Molecular Structure, Stereoisomerism, Ceramides chemical synthesis, Ceramides chemistry, Cyanides chemical synthesis, Cyanides chemistry, Glycolipids chemical synthesis, Glycolipids chemistry, Lipids chemistry
- Abstract
Unique types of ceramide and glycolipid architectures were obtained by means of Ugi reactions incorporating lipidic isocyanides as surrogates of sphingolipids. The multicomponent nature of this approach allowed for a highly efficient assembly process, wherein two of the components provided the lipidic tails while a third one incorporated either the functionality suitable for the conjugation to sugar or the sugar moiety itself. Two dissimilar strategies were implemented: (i) the initial assembly of ceramide analogues followed by glycosylation to produce a glycolipid skeleton and (ii) the one-pot construction of glycolipid frameworks by condensation of lipidic isocyanides either with lipidic amines and oligosaccharidic acids or with fatty acids and oligosaccharidic amines. Whereas both approaches are amenable for accessing analogues of anticancer glycolipids, the latter one proved to have greater potential owing to its more straightforward and efficient character. Overall, the methodology developed shows great promise toward the massive (eventually combinatorial) production of neoglycolipids suitable for biological screening.
- Published
- 2012
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28. New insights into the structure-cytotoxicity relationship of spirostan saponins and related glycosides.
- Author
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Pérez-Labrada K, Brouard I, Estévez S, Marrero MT, Estévez F, Bermejo J, and Rivera DG
- Subjects
- Antineoplastic Agents chemical synthesis, Antineoplastic Agents chemistry, Cell Proliferation drug effects, Cell Survival drug effects, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, Glycosides chemical synthesis, Glycosides chemistry, HL-60 Cells, Humans, Molecular Conformation, Saponins chemical synthesis, Saponins chemistry, Spirostans chemical synthesis, Spirostans chemistry, Stereoisomerism, Structure-Activity Relationship, Tumor Cells, Cultured, Antineoplastic Agents pharmacology, Glycosides pharmacology, Saponins pharmacology, Spirostans pharmacology
- Abstract
A variety of spirostan saponins and related glycosides were synthesized and evaluated for their cytotoxicity against the human myeloid leukemia cell line (HL-60). A linear glycosylation strategy allowed for accessing a variety of functionalization patterns at both the spirostanic and the saccharide moieties, which provides new information regarding the structure-cytotoxicity relationship of this family of steroidal glycosides. Intriguing results were achieved with respect to hecogenyl and 5α-hydroxy-laxogenyl β-chacotriosides, turning out to be the former very cytotoxic and the latter no cytotoxic at all. Importantly, the partially pivaloylated β-d-glucosides of 5α-hydroxy-laxogenin were the most potent cytotoxic compounds among all tested glycosides. This comprises the first report on acylated spirostanyl glucosides displaying significant cytotoxicity, and therefore, it opens up new opportunities toward the development of saponin analogues as anticancer agents., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
- Published
- 2012
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29. Polyphenol oxidase and peroxidase expression in four pineapple varieties (Ananas comosus L.) after a chilling injury.
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Raimbault AK, Marie-Alphonsine PA, Horry JP, Francois-Haugrin M, Romuald K, and Soler A
- Subjects
- Ananas genetics, Catechol Oxidase metabolism, Cold Temperature, Fruit enzymology, Fruit genetics, Peroxidase metabolism, Plant Proteins metabolism, Ananas enzymology, Catechol Oxidase genetics, Gene Expression Regulation, Enzymologic, Peroxidase genetics, Plant Proteins genetics
- Abstract
Pineapple internal browning (IB) is a chilling injury that produces enzymatic browning associated with flesh translucency. Pineapple biodiversity allowed the investigation of how polyphenol oxidase (PPO) and peroxidase (POD) activities with their different isoforms are involved in the IB mechanism. Fruits of four varieties that expressed IB symptoms differently, Smooth Cayenne (SCay) and the hybrids MD2, Flhoran 41 (Flh 41), and Flhoran 53 (Flh 53), were stressed by cold. The susceptible varieties showed classical brown spots but different patterns of IB, whereas MD2 and controls showed no IB. Enzymatic activities were measured on fruit protein extracts and PPO and POD isoforms separated on mini-gels (PhastSystem). Only PPO activity was significantly enhanced in the presence of IB. Up to six PPO isoforms were identified in the susceptible varieties. PPO was barely detectable in the nonsusceptible variety MD2 and in controls. The number of PPO isoforms and the total PPO activity after chilling are varietal characteristics.
- Published
- 2011
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30. Assessment of the emission of PCDD/Fs and dioxin-like PCBs from an industrial area over a nearby town using a selective wind direction sampling device.
- Author
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Martínez K, Austrui JR, Jover E, Abalos M, Rivera J, and Abad E
- Subjects
- Dioxins analysis, Environmental Monitoring methods, Polychlorinated Dibenzodioxins analysis, Air Pollutants analysis, Benzofurans analysis, Environmental Monitoring instrumentation, Industrial Waste analysis, Polychlorinated Biphenyls analysis, Polychlorinated Dibenzodioxins analogs & derivatives
- Abstract
The development of new sampling devices or strategies to assess the concentration of persistent organic pollutants (POPs) in the environment has increased in the last two decades. In this study, a selective sampling device was used to evaluate the impact of potential local sources of polychlorinated dibenzo-p-dioxin and dibenzofuran (PCDD/Fs) and dioxin-like polychlorinated biphenyl (dl-PCBs) emissions on the ambient air levels of such compounds in a town near an important industrial estate. Average concentrations of target compounds of up to 2.5 times for PCDD/Fs and 2 times for dl-PCBs were found to come from the industrial state confirming this area as the main responsible for the majority of such compounds reaching the town. This finding was supported by a PCDD/F and dl-PCB sample profile analysis and a principal component analysis (PCA), which established a direct link between the dioxin-like compounds found in the samples collected in the town and their source., (Copyright (c) 2009 Elsevier Ltd. All rights reserved.)
- Published
- 2010
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31. Dispersion and film-forming properties of poly(acrylic acid)-stabilized carbon nanotubes.
- Author
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Saint-Aubin K, Poulin P, Saadaoui H, Maugey M, and Zakri C
- Abstract
We present a detailed study of the influence of pH on the dispersion and film-forming properties of poly(acrylic acid)-stabilized carbon nanotubes. Poly(acrylic acid) (PAA) is a weak polyelectrolyte, with a pH-responsive behavior in aqueous solution. We obtain quantitative UV-visible measurements to show that the amount of polyelectrolyte in optimal pH conditions is weak, showing a good efficiency of the polymer as a carbon nanotube dispersing agent. The best dispersion conditions are achieved at pH 5, a value close to the pK(a) of PAA. Apart from this tenuous pH value, the PAA is not efficient at stabilizing nanotubes and atomic force microscopy allows us to explain the delicate balance between the PAA adsorption and the suspension stability. This study finally permits optimal conditions for making homogeneous and conductive composite films to be determined.
- Published
- 2009
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32. Laser induced damage of fused silica polished optics due to a droplet forming organic contaminant.
- Author
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Bien-Aimé K, Néauport J, Tovena-Pecault I, Fargin E, Labrugère C, Belin C, and Couzi M
- Abstract
We report on the effect of organic molecular contamination on single shot laser induced damage density at the wavelength of 351 nm, with a 3 ns pulse length. Specific contamination experiments were made with dioctylphthalate (DOP) in liquid or gaseous phase, on the surface of fused silica polished samples, bare or solgel coated. Systematic laser induced damage was observed only in the case of liquid phase contamination. Different chemical and morphological characterization methods were used to identify and understand the damage process. We demonstrate that the contaminant morphology, rather than its physicochemical nature, can be responsible for the decrease of laser induced damage threshold of optics.
- Published
- 2009
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33. Cost-effective HLA typing with tagging SNPs predicts celiac disease risk haplotypes in the Finnish, Hungarian, and Italian populations.
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Koskinen L, Romanos J, Kaukinen K, Mustalahti K, Korponay-Szabo I, Barisani D, Bardella MT, Ziberna F, Vatta S, Széles G, Pocsai Z, Karell K, Haimila K, Adány R, Not T, Ventura A, Mäki M, Partanen J, Wijmenga C, and Saavalainen P
- Subjects
- Celiac Disease immunology, Genetic Testing economics, Haplotypes, Humans, Celiac Disease genetics, Genetic Testing methods, HLA Antigens genetics, Polymorphism, Single Nucleotide
- Abstract
Human leukocyte antigen (HLA) genes, located on chromosome 6p21.3, have a crucial role in susceptibility to various autoimmune and inflammatory diseases, such as celiac disease and type 1 diabetes. Certain HLA heterodimers, namely DQ2 (encoded by the DQA1*05 and DQB1*02 alleles) and DQ8 (DQA1*03 and DQB1*0302), are necessary for the development of celiac disease. Traditional genotyping of HLA genes is laborious, time-consuming, and expensive. A novel HLA-genotyping method, using six HLA-tagging single-nucleotide polymorphisms (SNPs) and suitable for high-throughput approaches, was described recently. Our aim was to validate this method in the Finnish, Hungarian, and Italian populations. The six previously reported HLA-tagging SNPs were genotyped in patients with celiac disease and in healthy individuals from Finland, Hungary, and two distinct regions of Italy. The potential of this method was evaluated in analyzing how well the tag SNP results correlate with the HLA genotypes previously determined using traditional HLA-typing methods. Using the tagging SNP method, it is possible to determine the celiac disease risk haplotypes accurately in Finnish, Hungarian, and Italian populations, with specificity and sensitivity ranging from 95% to 100%. In addition, it predicts homozygosity and heterozygosity for a risk haplotype, allowing studies on genotypic risk effects. The method is transferable between populations and therefore suited for large-scale research studies and screening of celiac disease among high-risk individuals or at the population level.
- Published
- 2009
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34. Psychological follow-up of presymptomatic genetic testing for spinocerebellar ataxia type 2 (SCA2) in Cuba.
- Author
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Paneque M, Lemos C, Escalona K, Prieto L, Reynaldo R, Velázquez M, Quevedo J, Santos N, Almaguer LE, Velázquez L, Sousa A, Fleming M, and Sequeiros J
- Subjects
- Adult, Anxiety diagnosis, Anxiety psychology, Ataxins, Cuba, Depression diagnosis, Depression psychology, Family Planning Services, Family Relations, Female, Follow-Up Studies, Genetic Carrier Screening, Genetic Predisposition to Disease genetics, Genetic Predisposition to Disease psychology, Humans, Interview, Psychological, Male, Middle Aged, Motivation, Prospective Studies, Spinocerebellar Ataxias genetics, Adaptation, Psychological, Genetic Counseling psychology, Genetic Testing psychology, Nerve Tissue Proteins genetics, Spinocerebellar Ataxias psychology
- Abstract
Presymptomatic testing for spinocerebellar ataxia type 2 (SCA2) in Cuba started five years ago. We have now investigated the psychological impact of test results on 150 individuals at 50% risk for SCA2. In a prospective study, psychological instruments were used to evaluate depression, anxiety and family functioning (1) before testing and (2) one year after disclosure of the test result. One year after, anxiety and depression levels decreased both in carriers and non-carriers, but anxiety decreased significantly more in carriers. Pathological levels of anxiety were seen mostly in members of dysfunctional families, but decreased more in them than in other consultands. Presymptomatic testing thus seems to have been especially beneficial for these testees, possibly due to a greater gain from the psychosocial support received. It would be pertinent to evaluate now the impact of other psychosocial variables and perform longer-term longitudinal studies.
- Published
- 2007
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35. Role of sea-ice biota in nutrient and organic material cycles in the northern Baltic Sea.
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Kuparinen J, Kuosa H, Andersson A, Autio R, Granskog MA, Ikävalko J, Kaartokallio H, Karell K, Leskinen E, Piiparinen J, Rintala JM, and Tuomainen J
- Subjects
- Bacteria growth & development, Baltic States, Biomass, Chlorophyll metabolism, Environmental Monitoring, Eukaryota growth & development, Finland, Plankton metabolism, Population Dynamics, Seasons, Sweden, Biodiversity, Ecosystem, Ice, Nitrogen metabolism, Organic Chemicals metabolism, Phosphorus metabolism, Seawater
- Abstract
This paper compiles biological and chemical sea-ice data from three areas of the Baltic Sea: the Bothnian Bay (Hailuoto, Finland), the Bothnian Sea (Norrby, Sweden), and the Gulf of Finland (Tvärminne, Finland). The data consist mainly of field measurements and experiments conducted during the BIREME project from 2003 to 2006, supplemented with relevant published data. Our main focus was to analyze whether the biological activity in Baltic Sea sea-ice shows clear regional variability. Sea-ice in the Bothnian Bay has low chlorophyll a concentrations, and the bacterial turnover rates are low. However, we have sampled mainly land-fast level first-year sea-ice and apparently missed the most active biological system, which may reside in deformed ice (such as ice ridges). Our limited data set shows high concentrations of algae in keel blocks and keel block interstitial water under the consolidated layer of the pressure ridges in the northernmost part of the Baltic Sea. In land-fast level sea-ice in the Bothnian Sea and the Gulf of Finland, the lowermost layer appears to be the center of biological activity, though elevated biomasses can also be found occasionally in the top and interior parts of the ice. Ice algae are light limited during periods of snow cover, and phosphate is generally the limiting nutrient for ice bottom algae. Bacterial growth is evidently controlled by the production of labile dissolved organic matter by algae because low growth rates were recorded in the Bothnian Bay with high concentrations of allochthonous dissolved organic matter. Bacterial communities in the Bothnian Sea and the Gulf of Finland show high turnover rates, and activities comparable with those of open water communities during plankton blooms, which implies that sea-ice bacterial communities have high capacity to process matter during the winter period.
- Published
- 2007
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36. Ten years measuring PCDDs/PCDFs in ambient air in Catalonia (Spain).
- Author
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Abad E, Martínez K, Gustems L, Gómez R, Guinart X, Hernández I, and Rivera J
- Subjects
- Data Collection, Dibenzofurans, Polychlorinated, Geography, Industrial Waste, Polychlorinated Dibenzodioxins analysis, Rural Health, Spain, Suburban Health, Urban Health, Air Pollutants analysis, Benzofurans analysis, Environmental Monitoring, Polychlorinated Dibenzodioxins analogs & derivatives
- Abstract
This work summarizes the results of a ten year surveillance programme on PCDD/F in ambient air carried out in Catalonia (Spain). The study has been conducted by the Dioxin Laboratory of Spanish Council for Scientific Research (CSIC) in collaboration with the Environment Department of the Catalonian Government. 175 samples have been collected throughout Catalonia from 1994 to 2004. Different sampling locations classified as industrial, traffic, urban, suburban and rural sites have been monitored in order to find the most contaminated zones as well as the ones with expected background concentrations. The highest concentrations found in this study were determined at the industrial locations. Concentrations ranging from 5 to 1196 fg I-TEQ/m3, with a mean value of 140 fg I-TEQ/m3 and from 10 to 357 fg I-TEQ/m3, with a mean value of 72 fg I-TEQ/m3 were determined in industrial and traffic sampling points, respectively. In contrast, the lowest concentrations were found in rural stations, ranging from 5 to 45 fg I-TEQ/m3, with a mean value of 28 fg I-TEQ/m3. The PCDD/F concentration trend in Catalonian ambient air shown a clear drop of the median values occurred during the study sampling period. A decline of about 70% was observed from 1997-1998 to 2003-2004.
- Published
- 2007
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37. Surveillance programme on dioxin levels in soils in the Campo de Gibraltar (southwest Spain).
- Author
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Martínez K, Abad E, and Rivera J
- Subjects
- Soil standards, Spain, Dioxins analysis, Environmental Monitoring methods, Program Development, Soil analysis, Soil Pollutants analysis
- Abstract
The results of an epidemiologic study undertaken by the Spanish Council for Scientific Research (CSIC) after commission by the Spanish Parliament indicated that Huelva and Cádiz were the zones in Andalusia with elevated risk of cancer. A 6% (women) and 10% (men) cancer mortality excess was observed with respect to the other six Andalusian provinces. Huelva and Cádiz are located in the south-western region of Spain, and are characterized by a strong industrial activity concentrated in several industrial sites. This situation led to two environmental surveys in these areas, in which the presence of dioxins was studied among other parameters. A PCDD/F assessment in soils of the Campo de Gibraltar (Cádiz) was carried out from June 2003 to June 2004. A total of 20 samples were collected in this study divided in two sampling campaigns. The first 10 samples were taken in locations affected by high industrial activity zones as well as in landfills (hotspots). The rest of the samples were collected in areas that were not expected to be contaminated, such as agricultural zones and forests. I-TEQ values of the samples ranged from 0.26 to 15.08 ng/kg dm. In all, 85% of the samples were below the limit of 5 ng I-TEQ/kg I-TEQ concentrations of three samples only surpassed this limit. These zones corresponded to a landfill, a quarry used for dumping chemical product containers and a sample from the sewage system of the industrial site. These sites were used neither for agricultural nor for public purposes.
- Published
- 2006
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38. Therapeutic hypothermia modulates TNFR1 signaling in the traumatized brain via early transient activation of the JNK pathway and suppression of XIAP cleavage.
- Author
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Lotocki G, de Rivero Vaccari JP, Perez ER, Alonso OF, Curbelo K, Keane RW, and Dietrich WD
- Subjects
- Animals, Antibodies chemistry, Body Temperature physiology, Caspases metabolism, Cell Survival physiology, Enzyme Activation physiology, HSP70 Heat-Shock Proteins biosynthesis, I-kappa B Proteins physiology, Immunoblotting, NF-kappa B physiology, Rats, Brain Injuries physiopathology, Hypothermia, Induced, JNK Mitogen-Activated Protein Kinases physiology, Receptors, Tumor Necrosis Factor, Type I physiology, Signal Transduction physiology, X-Linked Inhibitor of Apoptosis Protein physiology
- Abstract
Tumor necrosis factor (TNF) plays a critical role in pathomechanisms associated with secondary damage after traumatic brain injury (TBI). The TNF ligand-receptor system stimulates inflammation by activation of gene transcription through the IkappaB kinase (IKK)-NF-kappaB and c-Jun NH(2)-terminal kinase (JNK)-AP-1 signaling cascades. TNF signaling following TBI involves both cell survival and apoptotic pathways, but the mechanism that accounts for the dual role of TNF remains unclear. Multiple studies have reported hypothermia to be protective following TBI, but the precise mechanism has not been clearly defined. Here, TNFR1 signaling pathways were investigated in the cerebral cortex of adult male Sprague-Dawley rats subjected to moderate fluid-percussion TBI and of naïve controls. Another group was subjected to moderate TBI with 30 min of pre- and post-traumatic hypothermia (33 degrees C). Rapid and marked increases in protein expression of TNFR1 and signaling intermediates in both the IKK-NF-kappaB and JNK pathways were induced in traumatized cortices. Hypothermia decreased TNFR1 protein expression acutely in traumatized cortices and stimulated early activation of signaling intermediates in the JNK, but not the IKK-NF-kappaB, signaling pathways. Hypothermia promoted a rapid activation of caspase-3 acutely after injury but suppressed caspase-3 activation at later time points. Moreover, hypothermia treatment suppressed cleavage of X-linked inhibitor of apoptosis protein (XIAP) into fragments induced by TBI. These data suggest that hypothermia may regulate both the JNK signaling cascade via XIAP and the preconditioning pathways that activate caspases. Thus, hypothermia mediates TNFR1 responses via early activation of the JNK signaling pathway and caspase-3, leading to endogenous neuroprotective events.
- Published
- 2006
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39. Polychlorinated dibenzo-p-dioxin/polychlorinated dibenzofuran releases into the atmosphere from the use of secondary fuels in cement kilns during clinker formation.
- Author
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Abad E, Martínez K, Caixach J, and Rivera J
- Subjects
- Air Pollutants standards, Benzofurans standards, Construction Materials, Dibenzofurans, Polychlorinated, Incineration methods, Industrial Waste, Polychlorinated Dibenzodioxins standards, Spain, Air Pollutants analysis, Benzofurans analysis, Polychlorinated Dibenzodioxins analogs & derivatives, Polychlorinated Dibenzodioxins analysis
- Abstract
The aim of this study was to evaluate the influence of using waste materials, such as tires or meat meal, as a secondary fuel during clinker production on the polychlorinated dibenzo-p-dioxin (PCDD)/polychlorinated dibenzofuran (PCDF) emission levels to the atmosphere. For this purpose, three different cement plants in Spain were chosen to conduct the project in different sampling episodes. Different materials were separately evaluated in each plant: the first plant included the addition of meat meal in the kiln, the second plant used rejected tires, and the third plant used a mixture of both. In all cases, PCDD/F emission values remained below the limit established by the European Union Directive of 0.1 ng I-TEQ/Nm3, with values ranging from 0.001 to 0.042 ng I-TEQ/Nm3. The major contribution to total TEQ in the majority of cases came from 2,3,7,8-tetrachlorodibenzofuran owing to its relatively higher levels and 2,3,4,7,8-pentachlorodibenzofuran because of its TEF of 0.5. The remaining 15 toxic congeners collectively provided only a minor contribution to TEQ. Furthermore, no marked differences were found compared with reported data obtained from Spanish cement kiln plants using conventional fuel. This fact indicates that the addition of used tires or meat meals had no effect on PCDD/PCDF emission levels.
- Published
- 2004
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- View/download PDF
40. The prevalence of celiac disease among family members of celiac disease patients.
- Author
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Dolinsek J, Urlep D, Karell K, Partanen J, and Micetić-Turk D
- Subjects
- Adolescent, Adult, Autoantibodies analysis, Biopsy, Celiac Disease diagnosis, Celiac Disease genetics, Celiac Disease immunology, Celiac Disease pathology, Child, Child, Preschool, Cross-Sectional Studies, Enzyme-Linked Immunosorbent Assay, Female, Fluorescent Antibody Technique, Genetic Predisposition to Disease, Gliadin immunology, Histocompatibility Testing, Humans, Immunoglobulin A analysis, Immunoglobulin G analysis, Infant, Intestines pathology, Male, Myofibrils immunology, Phenotype, Risk Factors, Slovenia epidemiology, Celiac Disease epidemiology, Family
- Abstract
Introduction: Celiac disease (CD) is more common in certain risk groups. Family members of known celiac patients represent the most important group. Serological screening enables us to detect patients before they develop serious complications. HLA typing has also proven to be a valuable diagnostic tool, especially in excluding the disease., Methods: To assess the prevalence of CD among family members, we screened 106 first-degree relatives (73 parents, 33 siblings; mean age 27.9 years) of 45 celiac patients in NE Slovenia. We analysed antigliadin (AGA) and antiendomysium (EMA) antibodies. Levels of IgG and IgAAGA were determined using the ELISA method, and EMA using indirect immunofluorescence. Serologically positive patients were recalled for intestinal biopsy and were HLA typed. Intestinal biopsy was performed by peroral aspiration capsule or during upper GI endoscopy. Biopsy specimens were examined histologically., Results: Six family members (5.67%) were both AGA IgG and EMA positive, and one (0.94%) was only EMA positive. All were either HLA DQ2 or DQ8 positive. Nine family members (8.49%) were only AGA IgG positive, two of them lacked the HLA DQ susceptibility alleles. Intestinal biopsy was performed in six family members, and the diagnosis of CD confirmed in five. All were both AGA IgG and EMA positive. They were either symptom-free or had only mild gastrointestinal symptoms, and carried the known HLA DQ risk alleles. The minimum prevalence of CD among family members in NE Slovenia can therefore be estimated at 4.72%., Discussion: The prevalence of CD among first-degree relatives is much higher than the prevalence of the disease in the general population. Most of these patients have an atypical form of the disease and would therefore be overlooked without an active search. Serological testing is recommended for all first-degree relatives of CD patients; they should also undergo HLA typing to detect those whose HLA phenotype is consistent with CD. This approach can also help in excluding individuals who do not need further diagnostic procedures for CD.
- Published
- 2004
41. Experimental intracerebral hemorrhage in the mouse: histological, behavioral, and hemodynamic characterization of a double-injection model.
- Author
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Belayev L, Saul I, Curbelo K, Busto R, Belayev A, Zhang Y, Riyamongkol P, Zhao W, and Ginsberg MD
- Subjects
- Animals, Basal Ganglia Hemorrhage pathology, Basal Ganglia Hemorrhage physiopathology, Blood, Blood Flow Velocity, Cerebrospinal Fluid, Cerebrovascular Circulation, Corpus Striatum blood supply, Corpus Striatum pathology, Corpus Striatum physiopathology, Disease Progression, Injections, Laser-Doppler Flowmetry, Male, Mice, Mice, Inbred C57BL, Reproducibility of Results, Stereotaxic Techniques, Behavior, Animal, Cerebral Hemorrhage pathology, Cerebral Hemorrhage physiopathology, Disease Models, Animal, Hemodynamics
- Abstract
Background and Purpose: A major limitation of intracerebral hemorrhage (ICH) research is the lack of reproducible animal models. The present study was conducted to validate in the mouse the double-injection method of ICH initially developed in the rat. We investigated the effect of intrastriatal injection of blood or cerebrospinal fluid (CSF) on cerebral blood flow (CBF), neurological score, hematoma volume, and brain swelling., Methods: Male C57BL/6 mice were anesthetized with halothane/nitrous oxide delivered by face mask. Rectal and cranial temperatures were regulated at 37 degrees C to 37.5 degrees C. Mice were placed in a stereotactic frame, and a 30-gauge stainless steel cannula was introduced through a burr hole into the left striatum. Each mouse received a 5-microL injection of either whole blood or CSF (over 3 minutes), followed 7 minutes later by 10 microL injected over 5 minutes. The injection cannula was slowly withdrawn 10 minutes after the second injection. Control mice had only cannula insertion. CBF was studied by laser Doppler perfusion imaging. Neurological status was evaluated on days 1 and 2. After 2 days, hematoma volume and brain swelling were calculated., Results: Physiological values were stable. Mice with ICH but not those with CSF or cannula alone had a marked, persistent neurological deficit and a highly reproducible hematoma, whose mean+/-SEM volume was 2.0+/-0.2 mm3 compared with a lesion size of 0.2+/-0.1 mm3 in mice with CSF. Residual swelling of the ipsilateral hemisphere at 48 hours was 5.7% in the hematoma and 1.5% in the CSF groups. Relative CBF in the neocortex ipsilateral to the injection site declined by approximately 45% to 60% during the first 20 minutes after cannula insertion/injection in all groups but began to renormalize at approximately 25 to 30 minutes in the CSF and cannula-only groups; in the hematoma group, cortical hypoperfusion of approximately 35% to 50% persisted during the 90-minute measurement period., Conclusions: The present ICH model in mice produces a consistent neurological deficit, hypoperfusion, hematoma volume, and brain swelling. This model closely mimics human hypertensive basal ganglionic ICH and should be useful for the evaluation of pharmaceutical therapies. Laser Doppler perfusion imaging is a useful new technique to quantify relative CBF changes and can be used for studies of dynamic changes of CBF in this in vivo model of ICH in mice.
- Published
- 2003
- Full Text
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42. Concordance of dermatitis herpetiformis and celiac disease in monozygous twins.
- Author
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Hervonen K, Karell K, Holopainen P, Collin P, Partanen J, and Reunala T
- Subjects
- Adult, Diseases in Twins diagnosis, Female, Humans, Male, Skin Tests, Twins, Monozygotic, Celiac Disease diagnosis, Celiac Disease genetics, Dermatitis Herpetiformis diagnosis, Dermatitis Herpetiformis genetics, Diseases in Twins genetics
- Abstract
Celiac disease can be defined as the classical manifestation of gluten sensitivity, which primarily affects the small intestine. Gluten sensitivity has also a skin manifestation, i.e., dermatitis herpetiformis. Both diseases have a strong genetic association with HLA DQ on chromosome 6. In this study we tried to estimate how much different clinical expressions of gluten sensitivity are determined by genetic factors, and hence how feasible they are for genetic mapping; therefore, we studied all six monozygous twin pairs found among 1292 prospectively collected patients of dermatitis herpetiformis in Finland. Three of the six twin pairs were concordant for dermatitis herpetiformis and for simultaneous enteropathy, celiac disease. Two other twin pairs were partially discordant, one of each pair had dermatitis herpetiformis and celiac disease, whereas the other had solely the gut manifestation of gluten sensitivity, i.e., celiac disease. Only one pair was found to be discordant for gluten sensitivity. All the pairs had typical risk alleles for gluten sensitivity, i.e., either HLA DQ2 or DQ8. These results demonstrate that the genetic component in gluten sensitivity as broadly defined is very strong (5/6 concordant). Genetically identical individuals can have clearly distinguished phenotypes, either dermatitis herpetiformis or celiac disease, suggesting that environmental factors determine the exact phenotype of this multifactorial disease. These findings are of importance in genetic linkage analyses, which focus to only certain phenotypic properties of a complex trait.
- Published
- 2000
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