68 results on '"Liyan Ni"'
Search Results
2. Platelet Indices Are the Promising Biomarkers in Monitoring Disease Activities in Patients with Syphilis
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Nanyan Jiang, Meiping Ye, Jingmin Yan, Chunjie Liao, Mengya Shang, Guixuan Wang, Ruirui Peng, Juan Wu, Tengfei Qi, Liyan Ni, Zhifang Guan, Wei Zhao, and Pingyu Zhou
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Syphilis ,Disease activities ,Platelet indices ,Platelet count ,Mean platelet volume ,Platelet distribution width ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objectives: To uncover the role of the platelet indices in patients with syphilis. Methods: A total of 2061 patients with syphilis and 528 healthy controls were enrolled in this retrospective cohort study. The data of platelet count (PLT), mean platelet volume (MPV), platelet distribution width (PDW), and indicators of syphilis activities were collected. The correlations between the platelet indices and disease activities were analyzed. Results: A total of 425 (20.6%) of the 2061 patients were of primary and secondary syphilis, 433 (21.0%) latent, 463 (22.5%) serofast, 350 (17.0%) asymptomatic neurosyphilis, and 390 (18.9%) symptomatic neurosyphilis. Compared with the healthy controls, PLT was significantly increased in the primary and secondary syphilis group; whereas, MPV and PDW were significantly decreased in all stages of syphilis. These changes of platelet indices were reversed after anti-treponemal therapy. Further correlation analysis showed that PLT was positively associated with the syphilis activity indicators [rapid plasma reagin (RPR) titer, cerebrospinal fluid white blood cell (CSF-WBC), CSF-protein, and CSF-VDRL (venereal disease research laboratory)] and inflammatory markers [WBC, C-reaction protein (CRP), and erythrocyte sedimentation rate (ESR)]. Conversely, PDW was negatively correlated with all of these parameters. MPV had an inverse relationship with RPR, ESR, and CRP. Conclusions: Platelet indices are associated with syphilis activities.
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- 2022
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3. Delivery of Basic Fibroblast Growth Factor Through an In Situ Forming Smart Hydrogel Activates Autophagy in Schwann Cells and Improves Facial Nerves Generation via the PAK-1 Signaling Pathway
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Binbin Hu, Hanbo Zhang, Menglu Xu, Lei Li, Man Wu, Susu Zhang, Xuejun Liu, Weidong Xia, Ke Xu, Jian Xiao, Hongyu Zhang, and Liyan Ni
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facial nerve injury ,autophagy ,Pak1 ,in situ forming hydrogel ,basic fibroblast growth factor ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Although studies have shown that basic fibroblast growth factor (bFGF) can activate autophagy and promote peripheral nerve repair, the role and the molecular mechanism of action of bFGF in the facial nerve are not clear. In this study, a thermosensitive in situ forming poloxamer hydrogel was used as a vehicle to deliver bFGF for treating facial nerve injury (FNI) in the rat model. Using H&E and Masson’s staining, we found that bFGF hydrogel can promote the functional recovery and regeneration of the facial nerve. Furthermore, studies on the mechanism showed that bFGF can promote FNI recovery by promoting autophagy and inhibiting apoptosis. Additionally, this study demonstrated that the role of hydrogel binding bFGF in nerve repair was mediated through the activation of the PAK1 signaling pathway in Schwann cells (SCs). These results indicated that poloxamer thermosensitive hydrogel loaded with bFGF can significantly restore the morphology and function of the injured facial nerve by promoting autophagy and inhibiting apoptosis by activating the PAK1 pathway, which can provide a promising strategy for FNI recovery.
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- 2022
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4. Effect of parasympathetic inhibition on expression of ILC2 cells in a mouse model of allergic rhinitis
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Binbin Hu, Yan Wang, Guotong Zheng, Hailin Zhang, and Liyan Ni
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Mouse model ,Allergic rhinitis ,Parasympathetic inhibition ,ILC2s ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Background: We wanted to investigate whether parasympathetic inhibition affected the expression of type 2 innate lymphoid cells (ILC2s) in the nasal mucosa of a mouse model of allergic rhinitis (AR). Methods: Thirty male C57BL/6 mice were randomly divided into 3 groups: control group, AR group, AR-treated group. AR nasal symptoms were assessed on a semi-quantitative scale according to the frequencies of nose rubbing and sneezing and the degree of rhinorrhea. The expression of cytokines protein in serum was detected by enzyme linked immunosorbent assay (ELISA). The number of ILC2s in nasal mucosa was detected by immunofluorescence double staining assay. Quantitative real-time Polymerase Chain Reaction (qPCR) was used to detect the expression of ILC2-associated factor in nasal mucosa. Results: The symptom scores of the AR group were significantly higher than those of the control group and AR-treated group. The expression levels of mouse ovalbumin (OVA) specific IgE, IL4, IL5, and IL13 in the serum of AR group were significantly higher than those in the control group and AR-treated group. The number of ILC2s and the gene expression of ILC2s related factors GATA3, CD25 and CD90 (Thy1) in the nasal mucosa of the AR group were significantly higher than those of the control group and AR-treated group. Conclusions: We found that parasympathetic inhibition relieved AR symptoms and inhibited immune response of AR mice. ILC2s play an important role in the occurrence and development of AR, and parasympathetic nerve inhibition reduced the number of ILC2s and inhibited the cytokines expression by ILC2s. Our data provide information on the mechanism of action of parasympathetic inhibition in AR.
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- 2021
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5. Characterization of Two Macrolide Resistance-Related Genes in Multidrug-Resistant Pseudomonas aeruginosa Isolates
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QING CHEN, WEI LU, DANYING ZHOU, GUOTONG ZHENG, HONGMAO LIU, CHANGRUI QIAN, WANGXIAO ZHOU, JUNWAN LU, LIYAN NI, QIYU BAO, AIFANG LI, TENG XU, and HAILI XU
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Pseudomonas aeruginosa ,macrolide ,resistance gene ,mphE ,msrE ,Genetics ,QH426-470 ,Microbiology ,QR1-502 - Published
- 2020
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6. Spread of the florfenicol resistance floR gene among clinical Klebsiella pneumoniae isolates in China
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Junwan Lu, Jinfang Zhang, Lei Xu, Yabo Liu, Pingping Li, Tingyuan Zhu, Cong Cheng, Shunfei Lu, Teng Xu, Huiguang Yi, Kewei Li, Wu Zhou, Peizhen Li, Liyan Ni, and Qiyu Bao
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Florfenicol ,floR ,Klebsiella pneumoniae ,Plasmid ,Human pathogen ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Florfenicol is a derivative of chloramphenicol that is used only for the treatment of animal diseases. A key resistance gene for florfenicol, floR, can spread among bacteria of the same and different species or genera through horizontal gene transfer. To analyze the potential transmission of resistance genes between animal and human pathogens, we investigated floR in Klebsiella pneumoniae isolates from patient samples. floR in human pathogens may originate from animal pathogens and would reflect the risk to human health of using antimicrobial agents in animals. Methods PCR was used to identify floR-positive strains. The floR genes were cloned, and the minimum inhibitory concentrations (MICs) were determined to assess the relative resistance levels of the genes and strains. Sequencing and comparative genomics methods were used to analyze floR gene-related sequence structure as well as the molecular mechanism of resistance dissemination. Results Of the strains evaluated, 20.42% (67/328) were resistant to florfenicol, and 86.96% (20/23) of the floR-positive strains demonstrated high resistance to florfenicol with MICs ≥512 μg/mL. Conjugation experiments showed that transferrable plasmids carried the floR gene in three isolates. Sequencing analysis of a plasmid approximately 125 kb in size (pKP18–125) indicated that the floR gene was flanked by multiple copies of mobile genetic elements. Comparative genomics analysis of a 9-kb transposon-like fragment of pKP18–125 showed that an approximately 2-kb sequence encoding lysR-floR-virD2 was conserved in the majority (79.01%, 83/105) of floR sequences collected from NCBI nucleotide database. Interestingly, the most similar sequence was a 7-kb fragment of plasmid pEC012 from an Escherichia coli strain isolated from a chicken. Conclusions Identified on a transferable plasmid in the human pathogen K. pneumoniae, the floR gene may be disseminated through horizontal gene transfer from animal pathogens. Studies on the molecular mechanism of resistance gene dissemination in different bacterial species of animal origin could provide useful information for preventing or controlling the spread of resistance between animal and human pathogens.
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- 2018
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7. A Validation Study on eGFR Equations in Chinese Patients With Diabetic or Non-diabetic CKD
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Danshu Xie, Hao Shi, Jingyuan Xie, Ying Ding, Wen Zhang, Liyan Ni, Yifan Wu, Yimin Lu, Bing Chen, Hongrui Wang, Hong Ren, Weiming Wang, Na Liu, and Nan Chen
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diabetes ,chronic kidney disease (CKD) ,diabetic kidney disease ,glomerular filtration rate ,CKD-EPI ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Aims: It remains controversial to choose the optimal equation to estimate glomerular filtration rate (GFR) in chronic kidney disease (CKD) patients with diabetes.Materials and Methods: Two hundred and fifteen diabetic CKD patients and 192 non-diabetic CKD patients were enrolled in this study. Iohexol GFR, serum creatinine (SCr), and Cystatin C(CysC) were measured simultaneously for each patient. SCr- and CysC-based estimated GFR (eGFR) were calculated through eight equations, including three CKD-EPI equations, Revised Lund-Malmö study equation (RLM), CAPA equation, and three Full Age Spectrum (FAS) equations. Bias, precision, and accuracy were compared among eGFR equations with iohexol-GFR serving as measured GFR (mGFR). Independent predictive factors of accuracy were explored using multivariate logistic regression analysis.Results: In the diabetic group, CKD-EPISCr−CysC showed the best performance among three CKD-EPI equations (interquartile range of 13.88 ml/min/1.73 m2 and 30% accuracy of 72.56%). Compared to CKD-EPISCr−CysC, the other five equations did not significantly improve the performance of GFR estimates. Mostly, eGFR equations were less accurate in diabetic group than in non-diabetic group. Significant differences were found in different mGFR range (P < 0.001). The multivariate logistic regression analysis identified that BMI, mGFR, and diabetic kidney disease (DKD) status were independent predictors of accuracy of three equations in diabetic group. HbA1c was a predictor of accuracy of CKD-EPISCr and CKD-EPICysC in diabetic group.Conclusions: This study showed that eGFR equations were less accurate in the diabetic group than in the non-diabetic group. CKD-EPIScr−CysC had the best performance among CKD-EPI equations in Chinese diabetic CKD patients. The other five equations did not significantly improve the performance of GFR estimates. BMI, mGFR, DKD status, and HbA1c were independent factors associated with accuracy in eGFR equations.
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- 2019
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8. Comparative Genomics Analysis of Plasmid pPV989-94 from a Clinical Isolate of Pantoea vagans PV989
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Lei Xu, Min Yin, Tingyuan Zhu, Yabo Liu, Yuanyuan Ying, Junwan Lu, Chaoqing Lin, Jianchao Ying, Teng Xu, Liyan Ni, Qiyu Bao, and Shunfei Lu
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Genetics ,QH426-470 - Abstract
Pantoea vagans, a gram-negative bacterium from the genus Pantoea and family Enterobacteriaceae, is present in various natural environments and considered to be plant endophytes. We isolated the Pantoea vagans PV989 strain from the clinic and sequenced its whole genome. Besides a chromosome DNA molecule, it also harboured three large plasmids. A comparative genomics analysis was performed for the smallest plasmid, pPV989-94. It can be divided into four regions, including three conservative regions related to replication (R1), transfer conjugation (R2), and transfer leading (R3), and one variable region (R4). Further analysis showed that pPV989-94 is most similar to plasmids LA637P2 and pEA68 of Erwinia amylovora strains isolated from fruit trees. These three plasmids share three conservative regions (R1, R2, and R3). Interestingly, a fragment (R4′) in R4, mediated by phage integrase and phage integrase family site-specific recombinase and encoding 9 genes related to glycometabolism, resistance, and DNA repair, was unique in pPV989-94. Homologues of R4′ were found in other plasmids or chromosomes, suggesting that horizontal gene transfer (HGT) occurred among different bacteria of various species or genera. The acquired functional genes may play important roles in the adaptation of bacteria to different hosts or environmental conditions.
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- 2018
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9. Factors Associated with Interstitial Lung Disease in Patients with Polymyositis and Dermatomyositis: A Systematic Review and Meta-Analysis.
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Li Zhang, Guoqin Wu, Di Gao, Guijian Liu, Lin Pan, Liyan Ni, Zheng Li, and Qiang Wang
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Medicine ,Science - Abstract
OBJECTIVES:Interstitial lung disease (ILD) is an extramuscular manifestation that results in increased morbidity and mortality from polymyositis (PM) and dermatomyositis (DM). The aim of this study was to systematically evaluate risk factors associated with the development of ILD in PM/DM. METHODS:Observational studies were identified from searching PubMed, Medline, Embase, and the Cochrane Library. Pooled odds ratios (ORs) or standardized mean differences (SMDs) and corresponding 95% confidence intervals (CIs) were obtained for the relationships between risk factors and ILD in PM/DM using either fixed- or random-effects models, whichever were appropriate. Heterogeneity tests, sensitivity analyses, and publication bias assessments were also performed. RESULTS:Twenty-three studies were selected for a meta-analysis that included 834 patients and 1245 control subjects. Risk factors that may have increased the risk of developing ILD in PM/DM patients included older age at diagnosis (SMD, 0.35; 95% CI, 0.18-0.52; P < 0.0001), arthritis/arthralgia (OR, 3.17; 95% CI, 1.99-5.04; P < 0.00001), fever (OR, 2.31; 95% CI, 1.42-3.76; P = 0.0007), presence of anti-Jo-1 antibodies (OR, 3.34; 95% CI, 2.16-5.16; P < 0.00001), elevated erythrocyte sedimentation rate (ESR; SMD, 0.48; 95% CI, 0.32-0.64; P < 0.00001), presence of anti-MDA5 antibodies (OR, 18.26; 95% CI, 9.66-34.51; P < 0.00001), and elevated C-reactive protein level (CRP; OR, 3.50; 95% CI, 1.48-8.28; P = 0.004). Meanwhile, malignancy (OR, 0.36; 95% CI, 0.18-0.72; P = 0.004) reduced the risk of developing ILD in PM/DM patients. CONCLUSION:Our meta-analysis results suggest that the association between PM/DM and ILD may be due to such risk factors as older age at diagnosis, arthritis/arthralgia, fever, presence of anti-Jo-1 antibodies, elevated ESR, presence of anti-MDA5 antibodies, and elevated CRP level, while malignancy was associated with a reduced risk of developing ILD. Thus, these variables may be used to guide screening processes for ILD in patients with PM/DM.
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- 2016
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10. Genotype: A Crucial but Not Unique Factor Affecting the Clinical Phenotypes in Fabry Disease.
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Xiaoxia Pan, Yan Ouyang, Zhaohui Wang, Hong Ren, Pingyan Shen, Weiming Wang, Yaowen Xu, Liyan Ni, Xialian Yu, Xiaonong Chen, Wen Zhang, Li Yang, Xiao Li, Jing Xu, and Nan Chen
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Medicine ,Science - Abstract
Numerous α-galactosidase A (α-gal A) gene (GLA) mutations have been identified in Fabry disease (FD), but studies on genotype-phenotype correlation are limited. This study evaluated the features of GLA gene mutations and genotype-phenotype relationship in Chinese FD patients. Gene sequencing results, demographic information, clinical history, and laboratory findings were collected from 73 Chinese FD patients. Totally 47 mutations were identified, including 23 novel mutations which might be pathogenic. For male patients, those with frameshift and nonsense mutations presented the classical FD, whereas those with missense mutations presented both of classical and atypical phenotypes. Interestingly, two male patients with missense mutation p.R356G from two unrelated families, and two with p.R301Q from one family presented different phenotypes. A statistically significant association was found between the levels of α-gal A enzyme activity and ocular changes in males, though no significant association was found between residual enzyme activity level and genotype or clinical phenotypes. For female patients, six out of seven with frameshift mutations and one out of nine with missense mutation presented the classical FD, and α-gal A activity in those patients was found to be significantly lower than that of patients with atypical phenotypes (13.73 vs. 46.32 nmol/ml/h/mg). Our findings suggest that the α-gal A activity might be associated with the clinical severity in female patients with FD. But no obvious associations between activity level of α-gal A and genotype or clinical phenotypes were found for male patients.
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- 2016
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11. Effects of SNPs (CYP1B1*2 G355T, CYP1B1*3 C4326G, and CYP2E1*5 G-1293C), smoking, and drinking on susceptibility to laryngeal cancer among Han Chinese.
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Jianhua Jin, Faming Lin, Shiyu Liao, Qiyu Bao, and Liyan Ni
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Medicine ,Science - Abstract
PURPOSE: This study was conducted to explore the effects of genetic polymorphisms (CYP1B1*2 G355T, CYP1B1*3 C4326G, and CYP2E1*5 G-1293C) and environmental factors (smoking and drinking) on susceptibility to laryngeal cancer in a Han Chinese study group. METHODS: This case-control study included 552 Han Chinese patients diagnosed with laryngeal cancer and 666 healthy control subjects of the same ethnicity, similar age, and gender. Genetic polymorphisms were examined using multi-PCR and Matrix Assisted Laser Desorption Ionization - Time of Flight (MALDI-TOF MS) methodology. The association of these genetic and environmental factors with susceptibility to laryngeal cancer was evaluated using a statistical approach. RESULTS: The frequencies of all three polymorphisms in the patient cohort were significantly different from those in the control cohort. Compared to the control cohort, carriers of variant alleles of CYP1B1*2 355T and CYP2E1*5 -1293C showed a higher risk for developing laryngeal cancer (for CYP1B1*2 355T, adjusted OR = 2.657, P
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- 2014
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12. Identification and characterization of two novel bla(KLUC) resistance genes through large-scale resistance plasmids sequencing.
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Teng Xu, Jun Ying, Xiaoding Yao, Yulong Song, Ping Ma, Bokan Bao, Weiyan Jiang, Xinmei Wu, Huifen Tou, Peizhen Li, Ping Ren, Jingxian Fei, Lei Yang, Qi Liu, Zuyuan Xu, Tieli Zhou, Liyan Ni, and Qiyu Bao
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Medicine ,Science - Abstract
Plasmids are important antibiotic resistance determinant carriers that can disseminate various drug resistance genes among species or genera. By using a high throughput sequencing approach, two groups of plasmids of Escherichia coli (named E1 and E2, each consisting of 160 clinical E. coli strains isolated from different periods of time) were sequenced and analyzed. A total of 20 million reads were obtained and mapped onto the known resistance gene sequences. As a result, a total of 9 classes, including 36 types of antibiotic resistant genes, were identified. Among these genes, 25 and 27 single nucleotide polymorphisms (SNPs) appeared, of which 9 and 12 SNPs are nonsynonymous substitutions in the E1 and E2 samples. It is interesting to find that a novel genotype of bla(KLUC), whose close relatives, bla(KLUC-1) and bla(KLUC-2), have been previously reported as carried on the Kluyvera cryocrescens chromosome and Enterobacter cloacae plasmid, was identified. It shares 99% and 98% amino acid identities with Kluc-1 and Kluc-2, respectively. Further PCR screening of 608 Enterobacteriaceae family isolates yielded a second variant (named bla(KLUC-4)). It was interesting to find that Kluc-3 showed resistance to several cephalosporins including cefotaxime, whereas bla(KLUC-4) did not show any resistance to the antibiotics tested. This may be due to a positively charged residue, Arg, replaced by a neutral residue, Leu, at position 167, which is located within an omega-loop. This work represents large-scale studies on resistance gene distribution, diversification and genetic variation in pooled multi-drug resistance plasmids, and provides insight into the use of high throughput sequencing technology for microbial resistance gene detection.
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- 2012
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13. Clinical spectrum of late symptomatic neurosyphilis in China: an 11-year retrospective study.
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Yilan Yang, Xin Gu, Lin Zhu, Yuanyuan Cheng, Haikong Lu, Zhifang Guan, Mei Shi, Liyan Ni, Rui-Rui Peng, Wei Zhao, Juan Wu, Tengfei Qi, Fuquan Long, Zhe Chai, Weiming Gong, Meiping Ye, and Pingyu Zhou
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- 2024
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14. Persistently elevated sFlt-1 and recovery of reduced ADAMTS13 activity in malignant hypertension.
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Hongkun Ma, Chongjian Wang, Mengdi Jiang, Kexin Jin, Tingting Xu, Zhiyu Wang, Jing Xu, Liyan Ni, Hao Shi, Pingyan Shen, Yongxi Chen, Xiaobei Feng, and Wen Zhang
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- 2024
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15. Global Burden of Early-Onset Ischemic Heart Disease, 1990 to 2019
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Xiao Liu, MD, PhD, Yuting Wu, MD, Fei Li, MD, Xinrui Qi, MD, Liyan Niu, MD, Yifan Wu, MD, Jitao Ling, MD, Wengen Zhu, MD, Qingqing Li, MD, Xinyu Liu, MD, Jing Zhang, MD, Yunfeng Shen, MD, Zhiwei Yan, MD, Deju Zhang, PhD, Jingfeng Wang, MD, Yuling Zhang, MD, and Peng Yu, PhD
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cardiovascular diseases ,death ,global burden of disease ,ischemic heart disease ,disability-adjusted life years ,incidence ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Background: Early-onset ischemic heart disease (IHD) is a growing burden associated with high disability and death. Objectives: This study aimed to estimate the burden of incidence, prevalence, and disability-adjusted life years (DALY) of early-onset IHD from 1990 to 2019. Methods: Data on the burden of early-onset IHD (men
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- 2025
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16. The importance of proper and prompt treatment of ocular syphilis: a lesson from permanent vision loss in 52 eyes
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Tengfei Qi, Mei Shi, Xin Gu, Yihong Qian, Liyan Ni, Rui-Rui Peng, Juan Wu, Pingyu Zhou, Ying Gao, Zhifang Guan, Weiming Gong, Sheng Lu, Michael Marks, Yan Yan, Wei Zhao, Lin Zhu, and Haikong Lu
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China ,Pediatrics ,medicine.medical_specialty ,Visual acuity ,genetic structures ,Dermatology ,Disease ,Blindness ,Skin Infectiology, Venereology and Sexual Health ,Eye Infections, Bacterial ,Ocular syphilis ,03 medical and health sciences ,0302 clinical medicine ,Atrophy ,medicine ,Humans ,Syphilis ,030212 general & internal medicine ,Retrospective Studies ,business.industry ,medicine.disease ,eye diseases ,Infectious Diseases ,030221 ophthalmology & optometry ,Optic nerve ,Proper treatment ,Original Article ,sense organs ,medicine.symptom ,business ,Uveitis - Abstract
Background Ocular involvement can occur at any stage of syphilis. Prompt diagnosis and proper treatment of ocular syphilis are vital to avoid long‐term consequences. Objectives To describe the risk factors for ocular syphilis and clinical features of blindness caused by syphilis. Methods We report risk factors for ocular syphilis amongst patients seen at the Shanghai Skin Disease Hospital between October 2009 and October 2017. We identify patients with ocular syphilis resulting in blindness and report the clinical characteristics, laboratory findings and treatment outcomes of these patients. Results A total of 8310 new cases of syphilis were seen, of which 213 patients had ocular disease and 50 patients had blindness due to syphilis. Increasing age and higher RPR titres were associated with ocular involvement but there was no association with HIV status. Blindness in syphilis was restricted predominantly to patients with optic nerve involvement and not patients with isolated uveitis. Fifty patients (and a total of 67 eyes) met the WHO definition of blindness prior to treatment for syphilis. At the end of follow‐up, vision had improved in 24 of 67 eyes (35.8%) after treatment. Successful treatment of uveitis was associated with the best improvement in visual acuity, whilst patient with underlying optic atrophy prior to treatment had the worst visual outcome. Conclusions Ocular involvement is an important manifestation of syphilis which may result in blindness. Our data demonstrate outcomes for ocular syphilis are poor if detected late; early recognition and diagnosis is therefore vital to avoid permanent visual loss.
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- 2020
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17. Clinical Characteristics and Prognosis of Infants and Children <3 Years of Age With Thyroglossal Duct Cyst Complicated With a Parapharyngeal Mass: A Case Series Study
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Caidi Chen, Fanli Liu, Jianjing Fang, Linyuan Sima, Liyan Ni, Songjie Xiang, and Siwen Xia
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Pediatrics, Perinatology and Child Health - Abstract
Thyroglossal duct cysts (TGDCs) are congenital and developmental abnormalities in infants and young children. This retrospective case series study examined the characteristics of 7 patients
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- 2023
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18. Regulation of CD73 on NAD metabolism: Unravelling the interplay between tumour immunity and tumour metabolism
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Jianhao Zhan, Le Huang, Liyan Niu, Wenhui Lu, Chengpeng Sun, Shanshan Liu, Zijun Ding, and Enliang Li
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CD73 ,NAD metabolism ,DNA damage repair ,Target therapy ,Medicine ,Cytology ,QH573-671 - Abstract
Abstract CD73, a cell surface-bound nucleotidase, serves as a crucial metabolic and immune checkpoint. Several studies have shown that CD73 is widely expressed on immune cells and plays a critical role in immune escape, cell adhesion and migration as a costimulatory molecule for T cells and a factor in adenosine production. However, recent studies have revealed that the protumour effects of CD73 are not limited to merely inhibiting the antitumour immune response. Nicotinamide adenine dinucleotide (NAD+) is a vital bioactive molecule in organisms that plays essential regulatory roles in diverse biological processes within tumours. Accumulating evidence has demonstrated that CD73 is involved in the transport and metabolism of NAD, thereby regulating tumour biological processes to promote growth and proliferation. This review provides a holistic view of CD73-regulated NAD + metabolism as a complex network and further highlights the emerging roles of CD73 as a novel target for cancer therapies.
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- 2024
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19. SGLT2 inhibitors: a novel therapy for cognitive impairment via multifaceted effects on the nervous system
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Jiaqi Mei, Yi Li, Liyan Niu, Ruikai Liang, Mingyue Tang, Qi Cai, Jingdong Xu, Deju Zhang, Xiaoping Yin, Xiao Liu, Yunfeng Shen, Jianping Liu, Minxuan Xu, Panpan Xia, Jitao Ling, Yuting Wu, Jianqi Liang, Jing Zhang, and Peng Yu
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Cognitive impairment ,Diabetes ,Sodium-glucose cotransporter-2 ,SGLT2 inhibitor ,Neuron ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract The rising prevalence of diabetes mellitus has casted a spotlight on one of its significant sequelae: cognitive impairment. Sodium-glucose cotransporter-2 (SGLT2) inhibitors, originally developed for diabetes management, are increasingly studied for their cognitive benefits. These benefits may include reduction of oxidative stress and neuroinflammation, decrease of amyloid burdens, enhancement of neuronal plasticity, and improved cerebral glucose utilization. The multifaceted effects and the relatively favorable side-effect profile of SGLT2 inhibitors render them a promising therapeutic candidate for cognitive disorders. Nonetheless, the application of SGLT2 inhibitors for cognitive impairment is not without its limitations, necessitating more comprehensive research to fully determine their therapeutic potential for cognitive treatment. In this review, we discuss the role of SGLT2 in neural function, elucidate the diabetes-cognition nexus, and synthesize current knowledge on the cognitive effects of SGLT2 inhibitors based on animal studies and clinical evidence. Research gaps are proposed to spur further investigation.
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- 2024
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20. Delivery of Basic Fibroblast Growth Factor Through an
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Binbin, Hu, Hanbo, Zhang, Menglu, Xu, Lei, Li, Man, Wu, Susu, Zhang, Xuejun, Liu, Weidong, Xia, Ke, Xu, Jian, Xiao, Hongyu, Zhang, and Liyan, Ni
- Abstract
Although studies have shown that basic fibroblast growth factor (bFGF) can activate autophagy and promote peripheral nerve repair, the role and the molecular mechanism of action of bFGF in the facial nerve are not clear. In this study, a thermosensitive
- Published
- 2021
21. Effect of parasympathetic inhibition on expression of ILC2 cells in a mouse model of allergic rhinitis
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Liyan Ni, Guotong Zheng, Hailin Zhang, Yan Wang, and Binbin Hu
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Immunology ,Mucous membrane of nose ,Immunoglobulin E ,Article ,Allergic rhinitis ,ILC2s ,Mouse model ,Immune system ,Internal medicine ,medicine ,Immunology and Allergy ,IL-2 receptor ,Interleukin 4 ,Parasympathetic inhibition ,rhinorrhea ,biology ,business.industry ,Innate lymphoid cell ,RC581-607 ,Ovalbumin ,Endocrinology ,biology.protein ,medicine.symptom ,Immunologic diseases. Allergy ,business - Abstract
Background We wanted to investigate whether parasympathetic inhibition affected the expression of type 2 innate lymphoid cells (ILC2s) in the nasal mucosa of a mouse model of allergic rhinitis (AR). Methods Thirty male C57BL/6 mice were randomly divided into 3 groups: control group, AR group, AR-treated group. AR nasal symptoms were assessed on a semi-quantitative scale according to the frequencies of nose rubbing and sneezing and the degree of rhinorrhea. The expression of cytokines protein in serum was detected by enzyme linked immunosorbent assay (ELISA). The number of ILC2s in nasal mucosa was detected by immunofluorescence double staining assay. Quantitative real-time Polymerase Chain Reaction (qPCR) was used to detect the expression of ILC2-associated factor in nasal mucosa. Results The symptom scores of the AR group were significantly higher than those of the control group and AR-treated group. The expression levels of mouse ovalbumin (OVA) specific IgE, IL4, IL5, and IL13 in the serum of AR group were significantly higher than those in the control group and AR-treated group. The number of ILC2s and the gene expression of ILC2s related factors GATA3, CD25 and CD90 (Thy1) in the nasal mucosa of the AR group were significantly higher than those of the control group and AR-treated group. Conclusions We found that parasympathetic inhibition relieved AR symptoms and inhibited immune response of AR mice. ILC2s play an important role in the occurrence and development of AR, and parasympathetic nerve inhibition reduced the number of ILC2s and inhibited the cytokines expression by ILC2s. Our data provide information on the mechanism of action of parasympathetic inhibition in AR.
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- 2021
22. White blood cell count and the incidence of hyperuricemia: insights from a community-based study
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Liyan Ni, Xiaobo Ma, Nan Chen, Jian Liu, Pingyan Shen, Xialian Yu, Xu Hao, and Weiming Wang
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Adult ,Male ,China ,medicine.medical_specialty ,Renal function ,Hyperuricemia ,030204 cardiovascular system & hematology ,urologic and male genital diseases ,Leukocyte Count ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Diabetes mellitus ,White blood cell ,Prevalence ,medicine ,Humans ,030212 general & internal medicine ,Renal Insufficiency, Chronic ,Risk factor ,Aged ,Proteinuria ,business.industry ,Incidence ,Incidence (epidemiology) ,General Medicine ,Middle Aged ,medicine.disease ,Cross-Sectional Studies ,Logistic Models ,medicine.anatomical_structure ,Multivariate Analysis ,Female ,medicine.symptom ,business ,Kidney disease - Abstract
Hyperuricemia (HUA) is a risk factor for chronic kidney disease (CKD). The relationship between HUA and white blood cell (WBC) count remains unknown. A sampling survey for CKD was conducted in Sanlin community in 2012 and 2014. CKD was defined as proteinuria in at least the microalbuminuric stage or an estimated GFR of 60 mL/(min∙1.73 m2). HUA was defined as serum uric acid > 420 μmol/L in men and > 360 μmol/L in women. This study included 1024 participants. The prevalence of HUA was 17.77%. Patients with HUA were more likely to have higher levels of WBC count, which was positively associated with HUA prevalence. This association was also observed in participants without CKD, diabetes mellitus, hyperlipidemia, or obesity. Multivariate logistic regression analysis showed that WBC count was independently associated with the risk for HUA in male and female participants. Compared with participants without HUA, inflammatory factors such as high-sensitivity C-reactive protein, tumor necrosis factor-α, and interleukin 6 increased in participants with HUA. Hence, WBC count is positively associated with HUA, and this association is independent of conventional risk factors for CKD.
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- 2018
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23. The role of NLRP3 inflammasome in aging and age-related diseases
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Ruikai Liang, Xinrui Qi, Qi Cai, Liyan Niu, Xi Huang, Deju Zhang, Jitao Ling, Yuting Wu, Yixuan Chen, Pingping Yang, Jianping Liu, Jing Zhang, and Peng Yu
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NLRP3 inflammasome ,Aging ,Related diseases ,Regulatory mechanisms ,Therapeutic strategies ,Immunologic diseases. Allergy ,RC581-607 ,Geriatrics ,RC952-954.6 - Abstract
Abstract The gradual aging of the global population has led to a surge in age-related diseases, which seriously threaten human health. Researchers are dedicated to understanding and coping with the complexities of aging, constantly uncovering the substances and mechanism related to aging like chronic low-grade inflammation. The NOD-like receptor protein 3 (NLRP3), a key regulator of the innate immune response, recognizes molecular patterns associated with pathogens and injury, initiating an intrinsic inflammatory immune response. Dysfunctional NLRP3 is linked to the onset of related diseases, particularly in the context of aging. Therefore, a profound comprehension of the regulatory mechanisms of the NLRP3 inflammasome in aging-related diseases holds the potential to enhance treatment strategies for these conditions. In this article, we review the significance of the NLRP3 inflammasome in the initiation and progression of diverse aging-related diseases. Furthermore, we explore preventive and therapeutic strategies for aging and related diseases by manipulating the NLRP3 inflammasome, along with its upstream and downstream mechanisms.
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- 2024
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24. Clinical significance of plasma globotriaosylsphingosine levels in Chinese patients with Fabry disease
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Li Yang, Bing Chen, Yan Ouyang, Liyan Ni, Xiaoxia Pan, Xialian Yu, Zhaohui Wang, Hong Ren, Nan Chen, and Yaowen Xu
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0301 basic medicine ,Cancer Research ,medicine.medical_specialty ,Coefficient of variation ,030204 cardiovascular system & hematology ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Immunology and Microbiology (miscellaneous) ,Disease severity ,Internal medicine ,medicine ,Clinical significance ,In patient ,liquid chromatography-tandem mass spectrometry ,Fabry disease ,business.industry ,Clinical performance ,General Medicine ,Articles ,medicine.disease ,enzyme activity ,Index score ,clinical application ,030104 developmental biology ,plasma globotriaosylsphingosine ,Biomarker (medicine) ,lipids (amino acids, peptides, and proteins) ,business - Abstract
Although plasma globotriaosylsphingosine (lyso-Gb3) is a promising biomarker of Fabry disease (FD), few studies have assessed the impact of lyso-Gb3 in patients with FD. A total of 38 patients diagnosed with FD at Ruijin Hospital between January 2012 and December 2014 were recruited in the current study. An additional 120 unrelated healthy individuals were selected as healthy controls. A simplified liquid chromatography-tandem mass spectrometry (LC-MS/MS) assay was performed to determine lyso-Gb3 levels in plasma. Protein precipitation and glycolipid extraction were conducted using acetone/methanol. Clinical performance, including diagnostic value and disease surveillance, were compared between plasma lyso-Gb3 levels and α-galactosidase A (α-gal A) enzyme activity. The overall coefficient of variation values between inter- and intra-days varied between 2.8 and 18.9% and linearity correlation coefficients were ≥0.99 for all assays. Therefore, the effectiveness of the LC-MS/MS method was validated. Furthermore, a cut-off value of 0.81 ng/ml plasma lyso-Gb3 was able to separate patients with FD from healthy individuals. The sensitivity of this cut-off was 94.7% and the specificity was 100%. Compared with α-gal A enzyme activity, the diagnostic rate of patients assessed using plasma lyso-Gb3 levels was similar; however, there was a tighter correlation between plasma lyso-Gb3 levels and the mainz severity score index score in male patients (r=0.711 vs. r=-0.687). The sensitivity of plasma lyso-Gb3 in diagnosing female patients with FD was higher than α-gal A enzyme activity (82.4 vs. 23.5%). To the best of our knowledge, the present study is the first to report the effectiveness of plasma lyso-Gb3 levels in diagnosing Chinese patients with FD. Using α-gal A activity as a reference, the results of current study indicated that plasma lyso-Gb3 levels are more useful at diagnosing female patients with FD. Furthermore, plasma lyso-Gb3 levels are more suitable at determining overall disease severity in male patients.
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- 2018
25. Aberrant Humoral Immune Responses in Neurosyphilis: CXCL13/CXCR5 Play a Pivotal Role for B-Cell Recruitment to the Cerebrospinal Fluid
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Yuanyuan Cheng, Qian Yu, Cuini Wang, Mei Shi, Weiming Gong, Pingyu Zhou, Juan Wu, Haikong Lu, Rui-Rui Peng, Liyan Ni, Zhifang Guan, Yuanyuan Wang, and Jian Huang
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Adult ,Male ,Receptors, CXCR5 ,0301 basic medicine ,Adolescent ,T-Lymphocytes ,Plasma Cells ,Neurosyphilis ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,medicine ,Humans ,Immunology and Allergy ,Treponema pallidum ,CXCL13 ,B cell ,Aged ,Aged, 80 and over ,B-Lymphocytes ,biology ,Follicular dendritic cells ,Germinal center ,Cell Differentiation ,Middle Aged ,Flow Cytometry ,medicine.disease ,Chemokine CXCL13 ,Immunity, Humoral ,Immunoglobulin A ,030104 developmental biology ,Infectious Diseases ,medicine.anatomical_structure ,Immunoglobulin M ,Case-Control Studies ,Immunoglobulin G ,Antibody Formation ,Immunology ,Humoral immunity ,biology.protein ,Female ,Antibody ,Biomarkers ,030217 neurology & neurosurgery ,Follow-Up Studies - Abstract
Background Previous studies documented that humoral immune responses participated in neurological damage in neurosyphilis patients. However, the mechanisms that trigger and maintain humoral immunity involved in neurosyphilis remain unknown. Methods Using flow cytometry, expression of B cells was measured in neurosyphilis and non-neurosyphilis. Expression of immunoglobulin indices and chemokine ligand CXCL13 was detected by enzyme-linked immunosorbent assay. The migration and inhibition assays were evaluated by modified chamber assays. The presence of CXCL13+ cells, cluster of differentiation (CD)20+ B cells, CD3+ T cells, CD138+ plasma cells and CD35+ follicular dendritic cells was studied by immunohistochemistry. Results Enrichment of B cells was observed and activated in the cerebrospinal fluid (CSF) of neurosyphilis patients. Immunoglobulin indices were increased and associated with the progress to neurosyphilis. High expression of CSF CXCL13 mediated B cell migration both in vitro and in vivo. There was a positive correlation among the CSF B cells, immunoglobulin indices, and CSF CXCL13 levels. Ectopic germinal centers (EGCs), important structures for humoral immunity, were observed in the intracranial syphilitic gumma. Conclusions CXCL13/CXCR5 mediated the aggregation of B cells, that directed the aberrant humoral immune responses via the formation of EGCs, which suggests a molecular mechanism of neurological damage in neurosyphilis.
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- 2017
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26. A Validation Study on eGFR Equations in Chinese Patients With Diabetic or Non-diabetic CKD
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Liyan Ni, Nan Chen, Yifan Wu, Bing Chen, Jingyuan Xie, Na Liu, Hong Ren, Ying Ding, Wen Zhang, Yimin Lu, Danshu Xie, Weiming Wang, Hongrui Wang, and Hao Shi
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0301 basic medicine ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,CKD-EPI ,Urology ,Renal function ,030209 endocrinology & metabolism ,chronic kidney disease (CKD) ,Logistic regression ,urologic and male genital diseases ,lcsh:Diseases of the endocrine glands. Clinical endocrinology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Endocrinology ,Interquartile range ,Diabetes mellitus ,medicine ,Original Research ,Creatinine ,glomerular filtration rate ,lcsh:RC648-665 ,biology ,diabetes ,business.industry ,medicine.disease ,female genital diseases and pregnancy complications ,diabetic kidney disease ,030104 developmental biology ,chemistry ,Cystatin C ,biology.protein ,Iohexol ,business ,medicine.drug ,Kidney disease - Abstract
Aims: It remains controversial to choose the optimal equation to estimate glomerular filtration rate (GFR) in chronic kidney disease (CKD) patients with diabetes. Materials and Methods: Two hundred and fifteen diabetic CKD patients and 192 non-diabetic CKD patients were enrolled in this study. Iohexol GFR, serum creatinine (SCr), and Cystatin C(CysC) were measured simultaneously for each patient. SCr- and CysC-based estimated GFR (eGFR) were calculated through eight equations, including three CKD-EPI equations, Revised Lund-Malmo study equation (RLM), CAPA equation, and three Full Age Spectrum (FAS) equations. Bias, precision, and accuracy were compared among eGFR equations with iohexol-GFR serving as measured GFR (mGFR). Independent predictive factors of accuracy were explored using multivariate logistic regression analysis. Results: In the diabetic group, CKD-EPISCr-CysC showed the best performance among three CKD-EPI equations (interquartile range of 13.88 ml/min/1.73 m2 and 30% accuracy of 72.56%). Compared to CKD-EPISCr-CysC, the other five equations did not significantly improve the performance of GFR estimates. Mostly, eGFR equations were less accurate in diabetic group than in non-diabetic group. Significant differences were found in different mGFR range (P < 0.001). The multivariate logistic regression analysis identified that BMI, mGFR, and diabetic kidney disease (DKD) status were independent predictors of accuracy of three equations in diabetic group. HbA1c was a predictor of accuracy of CKD-EPISCr and CKD-EPICysC in diabetic group. Conclusions: This study showed that eGFR equations were less accurate in the diabetic group than in the non-diabetic group. CKD-EPIScr-CysC had the best performance among CKD-EPI equations in Chinese diabetic CKD patients. The other five equations did not significantly improve the performance of GFR estimates. BMI, mGFR, DKD status, and HbA1c were independent factors associated with accuracy in eGFR equations.
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- 2019
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27. Histopathological Classification and Renal Outcome in Patients with Antineutrophil Cytoplasmic Antibodies-associated Renal Vasculitis: A Study of 186 Patients and Metaanalysis
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Yong-Xi Chen, Jing Xu, Xiaoxia Pan, Nan Chen, Xiao Li, Xiaonong Chen, Pingyan Shen, Wen Zhang, Hong Ren, and Liyan Ni
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medicine.medical_specialty ,Pathology ,Biopsy ,Immunology ,030232 urology & nephrology ,Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis ,Kidney ,Gastroenterology ,Antibodies, Antineutrophil Cytoplasmic ,RENAL VASCULITIS ,03 medical and health sciences ,0302 clinical medicine ,Rheumatology ,Internal medicine ,Statistical significance ,Humans ,Immunology and Allergy ,Medicine ,In patient ,Retrospective Studies ,Anti-neutrophil cytoplasmic antibody ,030203 arthritis & rheumatology ,Lung ,business.industry ,Retrospective cohort study ,Prognosis ,medicine.disease ,Renal histology ,medicine.anatomical_structure ,Disease Progression ,business ,Vasculitis - Abstract
Objective.Renal vasculitis is one of the most common manifestations of antineutrophil cytoplasmic antibodies (ANCA)-associated vasculitis (AAV) and renal histology is a key predictor of the outcome. A new histopathologic classification was proposed and validated, but the results are still debated.Methods.We performed a retrospective analysis to validate the histopathologic classification and performed a metaanalysis to evaluate its predictive value. There were 186 patients with ANCA-associated renal vasculitis diagnosed at Ruijin Hospital who were enrolled in the retrospective study. The metaanalysis considered the data for 1601 patients.Results.In our retrospective study, patients with focal class had the best renal outcome while patients with mixed class had the worst (p < 0.001). Metaanalysis showed that patients with focal class had better renal outcome than did those with crescentic class [risk ratio (RR) 0.23, 95% CI 0.16–0.34, p < 0.00001], with no evidence of heterogeneity (I2 = 0%, p = 0.96). Patients with crescentic class had better renal outcome than did those with sclerotic class (RR 0.52, 95% CI 0.41–0.64, p < 0.00001), with no evidence of heterogeneity (I2 = 2%, p = 0.43). We did not find statistical significance regarding renal outcome between mixed and crescentic classes (RR 1.14, 95% CI 0.91–1.43, p = 0.27), with no evidence of heterogeneity (I2 = 23%, p = 0.19). The retrospective study showed that lung and upper respiratory tract involvement were the most common extrarenal manifestations.Conclusion.We demonstrated the clinical utility of histopathologic classification in determining renal outcome in patients with AAV. Metaanalysis showed that patients with focal class had the best outcome while sclerotic class had the worst.
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- 2016
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28. Molecular Epidemiology and Characterization of Genotypes of Acinetobacter baumannii Isolates from Regions of South China
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Ruowang Pan, Huiguang Yi, Liqiang Chen, Li Zong, Jianchao Ying, Jinsong Li, Cong Cheng, Qiyu Bao, Junwan Lu, Liyan Ni, Zuyuan Xu, Teng Xu, Peizhen Li, Kunpeng Li, Jun Ying, Huifen Tou, Chuanxin Zhu, and Ailing Li
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0301 basic medicine ,Microbiology (medical) ,biology ,Molecular epidemiology ,medicine.drug_class ,030106 microbiology ,Antibiotics ,General Medicine ,Drug resistance ,biology.organism_classification ,Subtyping ,Acinetobacter baumannii ,Microbiology ,03 medical and health sciences ,Infectious Diseases ,Genotype ,Pulsed-field gel electrophoresis ,medicine ,Multilocus sequence typing - Abstract
The aim of this study was to analyze the molecular epidemiologic characteristics of Acinetobacter baumannii. A total of 398 isolates were collected in 7 regions of South China from January to June of 2012. Drug sensitivity was tested toward 15 commonly used antibiotics; thus, 146 multi-drug-resistant strains (resistant to more than 7 drugs) were identified, representing 36.7% of all isolates. Pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) were used for molecular subtyping. According to the PFGE results (with a cutoff of 70% similarity for the DNA electrophoretic bands), 146 strains were subdivided into 15 clusters, with cluster A being the largest (33.6%, distributed in all districts except Jiaxing). Cluster B was also widespread and included 14.4% of all strains. In addition, MLST results revealed 11 sequence types (ST), with ST208 being the most prevalent, followed by ST191 and ST729. Furthermore, 4 novel alleles and 6 novel STs were identified. Our results showed that multi-drug-resistant A. baumannii in South China shares the origin with other widespread strains in other countries. The nosocomial infections caused by A. baumannii have been severe in South China. Continuous monitoring and judicious antibiotic use are required.
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- 2016
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29. Prevalence estimates of the insulin resistance and associated prevalence of heart failure among United Status adults
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Xiaozhong Li, Jihong Wang, Liyan Niu, Ziqi Tan, Jianyong Ma, Ling He, Peng Yu, Xiao Liu, and Juxiang Li
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Triglyceride glucose index ,Homeostatic model assessment of insulin resistance ,Insulin resistance ,Heart failure ,Nation health and nutrition examination survey ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background The triglyceride glucose (TyG) index, a metric for estimating insulin resistance (IR), is linked with cardiovascular disease (CVD) morbidity and mortality among the population regardless of diabetic status. However, IR prevalence and the association between the TyG index and heart failure (HF) in Americans is unclear. Methods The Nation Health and Nutrition Examination Survey (NHANES) (2009–2018) dataset was used. IR was defined by homeostatic model assessment of insulin resistance (HOMA-IR) > 2.0 and 1.5. The TyG index was calculated as Ln [fasting triglycerides (mg/dL) × fasting glucose (mg/dL)/2]. A weighted logistic regression was applied to evaluate the association between the TyG index and the prevalence of HF. Results This study comprised 12,388 people, including 322 (2.6%) individuals with HF. The average prevalence of IR was found to be 13.9% and 22.7% for cutoff values greater than 2.0 and 1.5, respectively. HOMA-IR and the TyG index showed a moderate correlation (r = 0.30). There is a significant positive association between the TyG index and HF prevalence (per 1-unit increment; adjusted OR [aOR]: 1.34; 95% confidence interval [CI]: 1.02–1.76). Patients with higher TyG values were associated with a prevalence of HF (OR:1.41; 95% CI: 1.01,1.95) (quartiles 4 vs 1–3). The TyG index is associated with a higher prevalence of dyslipidemia, coronary heart disease, and hypertension but not a stroke (cerebrovascular disease). Conclusions Our results show that IR does not considerably increase from 2008 to 2018 in American adults. A moderate correlation is noted between HOMA-IR and the TyG index. TyG index is associated with the prevalence of HF, as were other cardiovascular diseases.
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- 2023
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30. Molecular Variation and Horizontal Gene Transfer of the Homocysteine Methyltransferase Gene mmuM and its Distribution in Clinical Pathogens
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Jinsong Li, Cheng Zhang, Liyan Ni, Peizhen Li, Aifang Li, Tieli Zhou, Qiyu Bao, Qi Liu, Bokan Bao, Jun Ying, Jinfang Zhang, Huifeng Wang, Jianchao Ying, Li Zhou, Ying Zhang, Teng Xu, Huiguang Yi, Junwan Lu, and Zuyuan Xu
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Gene Transfer, Horizontal ,Molecular Sequence Data ,comparative genomics ,Homocysteine S-Methyltransferase ,Applied Microbiology and Biotechnology ,Genome ,Plasmid ,Species Specificity ,Escherichia ,RNA, Ribosomal, 16S ,Cluster Analysis ,Molecular Biology ,Gene ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,DNA Primers ,Genetics ,Comparative genomics ,biology ,Phylogenetic tree ,Bacteria ,Base Sequence ,Chromosome Mapping ,Genetic Variation ,High-Throughput Nucleotide Sequencing ,molecular variation ,Cell Biology ,homocysteine methyltransferase gene ,biology.organism_classification ,GenBank ,Horizontal gene transfer ,horizontal gene transfer ,Developmental Biology ,Research Paper - Abstract
The homocysteine methyltransferase encoded by mmuM is widely distributed among microbial organisms. It is the key enzyme that catalyzes the last step in methionine biosynthesis and plays an important role in the metabolism process. It also enables the microbial organisms to tolerate high concentrations of selenium in the environment. In this research, 533 mmuM gene sequences covering 70 genera of the bacteria were selected from GenBank database. The distribution frequency of mmuM is different in the investigated genera of bacteria. The mapping results of 160 mmuM reference sequences showed that the mmuM genes were found in 7 species of pathogen genomes sequenced in this work. The polymerase chain reaction products of one mmuM genotype (NC_013951 as the reference) were sequenced and the sequencing results confirmed the mapping results. Furthermore, 144 representative sequences were chosen for phylogenetic analysis and some mmuM genes from totally different genera (such as the genes between Escherichia and Klebsiella and between Enterobacter and Kosakonia) shared closer phylogenetic relationship than those from the same genus. Comparative genomic analysis of the mmuM encoding regions on plasmids and bacterial chromosomes showed that pKF3-140 and pIP1206 plasmids shared a 21 kb homology region and a 4.9 kb fragment in this region was in fact originated from the Escherichia coli chromosome. These results further suggested that mmuM gene did go through the gene horizontal transfer among different species or genera of bacteria. High-throughput sequencing combined with comparative genomics analysis would explore distribution and dissemination of the mmuM gene among bacteria and its evolution at a molecular level.
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- 2015
31. Comparative Genomics Analysis of Plasmid pPV989-94 from a Clinical Isolate of
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Lei, Xu, Min, Yin, Tingyuan, Zhu, Yabo, Liu, Yuanyuan, Ying, Junwan, Lu, Chaoqing, Lin, Jianchao, Ying, Teng, Xu, Liyan, Ni, Qiyu, Bao, and Shunfei, Lu
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Research Article - Abstract
Pantoea vagans, a gram-negative bacterium from the genus Pantoea and family Enterobacteriaceae, is present in various natural environments and considered to be plant endophytes. We isolated the Pantoea vagans PV989 strain from the clinic and sequenced its whole genome. Besides a chromosome DNA molecule, it also harboured three large plasmids. A comparative genomics analysis was performed for the smallest plasmid, pPV989-94. It can be divided into four regions, including three conservative regions related to replication (R1), transfer conjugation (R2), and transfer leading (R3), and one variable region (R4). Further analysis showed that pPV989-94 is most similar to plasmids LA637P2 and pEA68 of Erwinia amylovora strains isolated from fruit trees. These three plasmids share three conservative regions (R1, R2, and R3). Interestingly, a fragment (R4′) in R4, mediated by phage integrase and phage integrase family site-specific recombinase and encoding 9 genes related to glycometabolism, resistance, and DNA repair, was unique in pPV989-94. Homologues of R4′ were found in other plasmids or chromosomes, suggesting that horizontal gene transfer (HGT) occurred among different bacteria of various species or genera. The acquired functional genes may play important roles in the adaptation of bacteria to different hosts or environmental conditions.
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- 2017
32. Comparative genomics analysis of Raoultella planticola S25 isolated from duck in China, with florfenicol resistance
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Xi Lin, Yi Jiang, Yabo Liu, Teng Xu, Junwan Lu, Yuanyuan Ying, Kewei Li, Liyan Ni, Fei Wu, Qing Chen, and Qiyu Bao
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DNA, Bacterial ,Florfenicol ,China ,Gene Transfer, Horizontal ,040301 veterinary sciences ,030231 tropical medicine ,Immunology ,Microbial Sensitivity Tests ,Biology ,Molecular cloning ,Microbiology ,Genome ,0403 veterinary science ,Feces ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Plasmid ,Enterobacteriaceae ,Drug Resistance, Multiple, Bacterial ,Animals ,Immunology and Allergy ,Cloning, Molecular ,ORFS ,Gene ,Thiamphenicol ,Comparative genomics ,Genetics ,General Veterinary ,Genomics ,Sequence Analysis, DNA ,04 agricultural and veterinary sciences ,General Medicine ,biology.organism_classification ,Raoultella planticola ,Anti-Bacterial Agents ,Klebsiella pneumoniae ,Ducks ,Infectious Diseases ,chemistry ,Genome, Bacterial ,Plasmids - Abstract
To characterize the florfenicol resistance gene and analyze the structure of the resistance gene-related sequence of an Raoultella planticola strain S25 isolated from a duck fecal sample from a farm in South China. Molecular cloning was performed to clone the resistance genes such as mdfA, floR and so on, and the minimum inhibitory concentrations (MICs) were quantified to determine the resistance levels generated by the cloned genes and the related strains. Sequencing and comparative genomics methods were used to analyze the structure of the resistance gene-related sequence. The result showed that the genome of R. planticola S25 consists of a 5.47 Mb chromosome encoding 4962 predicted coding sequence (CDS) and a 68,566 bp plasmid, pS25-68, encoding 84 ORFs. The plasmid sharing the greatest sequence identity with the floR-carrying plasmid pS25-68 is plasmid1 in Klebsiella pneumoniae strain blaNDM-1, which was isolated from a patient in Canada. The mdfA1 gene encoded on the chromosome generated resistance to florfenicol in addition to chloramphenicol. Comparative genomic analysis of the floR-related transposon-like fragment of pS25-68 showed that an approximately 3 kb sequence encoding IS91-virD2-floR-lysR was conserved and presented in the majority of the sequences (84.5 %, 169/200) collected from the database. The results of this work demonstrated that horizontal transfer of the florfenicol resistance gene floR occurred widely between the bacteria of different species and with different origins and that additional florfenicol resistance genes may be present in the bacterial population.
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- 2020
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33. Quantum dynamics study of isotope effects of the OD/OH + CH3 reactions
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Yuping Wang, Dunyou Wang, Xin Xin, and Liyan Ni
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010304 chemical physics ,Chemistry ,Quantum dynamics ,Biophysics ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,Molecular physics ,0104 chemical sciences ,Reaction rate constant ,0103 physical sciences ,Kinetic isotope effect ,Computer Science::Symbolic Computation ,Physical and Theoretical Chemistry ,Molecular Biology ,Computer Science::Distributed, Parallel, and Cluster Computing - Abstract
A six-degrees-of-freedom, time-dependent quantum dynamics calculation is employed to study the integral cross sections, full-dimensional cumulative reaction probabilities and full-dimensional rate ...
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- 2020
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34. Enzyme-Assisted Extraction of Narirutin from Citri Reticulatae Pericarpium and Anti-allergic Asthma Activity
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Xiaolei Shi, Lina Zhao, Liyan Niu, Jhao Wei, Xuwen Li, and Yongri Jin
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allergy ,citri reticulatae pericarpium ,immunology ,inflammation ,narirutin ,Biology (General) ,QH301-705.5 - Abstract
Background: Asthma is a heterogeneous disorder of the airways related to inflammation; it affects millions of people worldwide. Due to the side effects of inhaled corticosteroids, researchers focused on the therapeutic effects of compounds derived from natural products. Objective: To investigate the therapeutic benefits of Narirutin a valuable flavonoid in Citri Reticulatae Pericarpium for asthma. Methods: Narirutin was extracted using the enzyme-assisted method with the L9 (34) orthogonal array to optimize the temperatures, pH, and reaction time. The mechanism of action of Narirutin was investigated via ELISA, flow cytometry, and Western blot analysis in vivo. Results: Narirutin suppressed inflammatory cell infiltration in the lung tissue and decreased IgE and IgG1 levels in serum in vivo. It can also alleviate interleukin (IL)-4, IL-5, and interferon-γ concentrations in bronchoalveolar lavage fluid in mice. Moreover, it increased the ratio of CD4+/CD8+ T cells. Additionally, Narirutin significantly suppressed p-ERK1/2 and p-JNK expression in the MAPK signaling pathway. Conclusion: Narirutin affects the Th1/Th2 imbalance through the p-ERK and p-JNK suppression in the MAPK signaling pathway.
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- 2022
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35. Administration of cathepsin B inhibitor CA-074Me reduces inflammation and apoptosis in polymyositis
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Qiang Wang, Yurong Feng, and Liyan Ni
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Adult ,Male ,medicine.medical_specialty ,Pathology ,Guinea Pigs ,Antigens, Differentiation, Myelomonocytic ,Apoptosis ,Inflammation ,Dermatology ,Biochemistry ,Polymyositis ,Cathepsin B ,Pathogenesis ,Western blot ,Antigens, CD ,Internal medicine ,Animals ,Humans ,Medicine ,Molecular Biology ,Aged ,TUNEL assay ,medicine.diagnostic_test ,Tumor Necrosis Factor-alpha ,business.industry ,Macrophages ,Muscles ,Dipeptides ,Middle Aged ,medicine.disease ,Disease Models, Animal ,Endocrinology ,Proto-Oncogene Proteins c-bcl-2 ,Female ,Tumor necrosis factor alpha ,medicine.symptom ,business - Abstract
Background Polymyositis (PM) cause pain and weakness of muscle, even threatens patient's lives, but the etiology and pathogenesis of it remains partially understood. Previous studies have proved Cathepsin B (CB) was strongly stained in muscle tissues of PM patients. But no further studies were performed to investigate the role of CB in PM. Objective To investigate the protective effects of CB inhibitor CA-074Me in PM. Methods CB expression, inflammation and apoptosis were analyzed in muscle tissues from patients with PM. Guinea pigs were inoculated intraperitoneally with Coxsackie virus B1 (CVB1) and were then immunized with completely emulsified 0.6 ml rabbit muscle homogenates in Freund's Complete Adjuvant (FCA) once a week for consecutive three weeks. The effects of CB inhibitor CA-074Me on CB expression, inflammation and apoptosis were then investigated. Inflammation was assessed by histological examination. Both immunohistochemistry and western blot were used to determine the protein expression. The mRNA levels of CB were measured by Real-Time RT-PCR. The apoptosis was determined by TUNEL assay. Results In patients with PM, the protein levels of CB were significantly up-regulated in muscle tissues compared with healthy controls, which correlated with increases in inflammation score and apoptotic rate in PM patients. Consistently, the expression of CB, inflammation score, CD8+ T-cell, CD68+ cell, tumor necrosis factor-alpha (TNF-α) infiltration and apoptotic rate were significantly increased in the guinea-pig model of CVB1-induced polymyositis. Administration of CA-074Me reduced CB expression, decreased inflammation score and attenuated apoptosis in muscle tissues of the guinea-pig model of CVB1-induced polymyositis. The inhibitory effect of CA-074Me on apoptosis was associated with down-regulation of Bax expression and consequent increase in the ratio of Bcl-2/Bax. However, CA-074Me had effect not on CD8+ T-cells infiltrations but on CD68+ cells and TNF-α+ cells infiltrations in the guinea-pig model of CVB1-induced polymyositis. Conclusion This study confirms up-regulation of CB in PM patients and demonstrates that inhibition of CB provides protective effects in a guinea pig model of CVB1-induced PM. Thus, CB will be an important therapeutic target for PM.
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- 2013
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36. Insights into the evolution of gene organization and multidrug resistance from Klebsiella pneumoniae plasmid pKF3-140
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Liyan Ni, Xueying Li, Qiyu Bao, Jinyu Wu, Yali Xi, Peizhen Li, Tieli Zhou, Lei Yang, Jun Ying, Yanmei Yang, Junrong Wang, Jie Bai, Qi Liu, Ping Ren, Jinsong Li, and Yang Yang
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Klebsiella pneumoniae ,Microbial Sensitivity Tests ,Drug resistance ,medicine.disease_cause ,Microbiology ,Evolution, Molecular ,Antibiotic resistance ,Plasmid ,Drug Resistance, Multiple, Bacterial ,Escherichia coli ,Genetics ,medicine ,Gene ,biology ,Salmonella enterica ,General Medicine ,Tetracycline ,biology.organism_classification ,Anti-Bacterial Agents ,Multiple drug resistance ,Genes, Bacterial ,Conjugation, Genetic ,Horizontal gene transfer ,Plasmids - Abstract
Plasmid-mediated transfer of drug-resistance genes among various bacterial species is considered one of the most important mechanisms for the spread of multidrug resistance. To gain insights into the evolution of gene organization and antimicrobial resistance in clinical bacterial samples, a complete plasmid genome of Klebsiella pneumoniae pKF3-140 is determined, which has a circular chromosome of 147,416bp in length. Among the 203 predicted genes, 142 have function assignment and about 50 appear to be involved in plasmid replication, maintenance, conjugative transfer, iron acquisition and transport, and drug resistance. Extensive comparative genomic analyses revealed that pKF3-140 exhibits a rather low sequence similarity and structural conservation with other reported K. pneumoniae plasmids. In contrast, the overall organization of pKF3-140 is highly similar to Escherichia coli plasmids p1ESCUM and pUTI89, which indicates the possibility that K. pneumoniae pKF3-140 may have a potential origin in E. coli. Meanwhile, interestingly, several drug resistant genes show high similarity to the plasmid pU302L in Salmonella enterica serovar Typhimurium U302 strain G8430 and the plasmid pK245 in K. pneumoniae. This mosaic pattern of sequence similarities suggests that pKF3-140 might have arisen from E. coli and acquired the resistance genes from a variety of enteric bacteria and underscores the importance of a further understanding of horizontal gene transfer among enteric bacteria.
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- 2013
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37. Botulinum toxin treatment for essential palatal tremors presenting with nasal clicks instead of pulsatile tinnitus: a case report
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Baozhen Luo, Liyan Ni, Yufeng Ye, and Shiyu Liao
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Male ,Botulinum Toxins ,Lidocaine ,Case Report ,Electromyography ,Injections, Intralesional ,Tinnitus ,0302 clinical medicine ,Botulinum toxin ,Tremor ,030223 otorhinolaryngology ,Nose ,medicine.diagnostic_test ,Middle Aged ,medicine.anatomical_structure ,Treatment Outcome ,Anesthesia ,medicine.symptom ,medicine.drug ,medicine.medical_specialty ,Clinical Neurology ,Risk Assessment ,03 medical and health sciences ,Rare Diseases ,medicine ,otorhinolaryngologic diseases ,Humans ,Inferior olive ,General Dentistry ,Palatal tremors ,Soft palate ,Dentistry(all) ,business.industry ,Pulsatile tinnitus ,Endoscopy ,Symptomatic relief ,Surgery ,Otorhinolaryngology ,Quality of Life ,Neurology (clinical) ,Palate, Soft ,business ,Tomography, X-Ray Computed ,030217 neurology & neurosurgery ,Follow-Up Studies - Abstract
Background In this study, we report a rare case of an adult patient with essential palatal tremors (EPT) presenting as nasal clicks, instead of otic clicks or objective pulsatile tinnitus in common EPT. Case presentation Nasal endoscopic examination and EMG recordings of the soft palate muscles were performed to confirm the source of the clicks. Initial treatment with lidocaine provided symptomatic relief for four hours. The patient was then treated with four simultaneous injections of 12.5 U of botulinum toxin in four different sites of the soft palate. Palatal tremors and clicks completely disappeared within three months of treatment. Conclusions To our knowledge, this is the first case of EPT that presented with nasal clicks. We recommend that otolaryngologists should expect this rare occurrence in the clinical setting, and handle patients presenting with such symptoms with care and compassion in order not to worsen their psychological status. Electronic supplementary material The online version of this article (doi:10.1186/s13005-016-0129-6) contains supplementary material, which is available to authorized users.
- Published
- 2016
38. CXCL13, CXCL10 and CXCL8 as Potential Biomarkers for the Diagnosis of Neurosyphilis Patients
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Yudan Liu, Liyan Ni, Zhifang Guan, Cuini Wang, Sufang Zhang, Kaiqi Wu, Zixiao Gao, Mei Shi, Yuanyuan Cheng, Pingyu Zhou, Yong-Liang Lou, Haikong Lu, and Qian Yu
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Adult ,Male ,musculoskeletal diseases ,0301 basic medicine ,medicine.drug_class ,Antibiotics ,Sensitivity and Specificity ,Article ,Neurosyphilis ,03 medical and health sciences ,0302 clinical medicine ,Cerebrospinal fluid ,Predictive Value of Tests ,medicine ,Humans ,030212 general & internal medicine ,CXCL13 ,CSF albumin ,Multidisciplinary ,business.industry ,Interleukin-8 ,Case-control study ,Middle Aged ,medicine.disease ,Chemokine CXCL13 ,Anti-Bacterial Agents ,Up-Regulation ,Chemokine CXCL10 ,Titer ,030104 developmental biology ,Case-Control Studies ,Predictive value of tests ,Immunology ,Female ,business ,Biomarkers - Abstract
At present, diagnosis for neurosyphilis remains a major clinical challenge. Venereal Disease Research Laboratory (VDRL) titer of the cerebrospinal fluid (CSF) is suboptimally sensitive to diagnose neurosyphilis, which can be negative in neurosyphilis patients, especially in asymptomatic neurosyphilis patients. In the search for biomarkers of neurosyphilis, we investigated the chemokine profile in CSF of neurosyphilis patients and found that the concentrations of CXCL13, CXCL10 and CXCL8 were selectively elevated in neurosyphilis patients and correlated with CSF protein concentration and CSF-VDRL titer. After antibiotic treatment, the concentration of these chemokines was dramatically reduced. The area under the ROC curve (AUC) of CSF CXCL13, CXCL8,CXCL10 and the CSF/serum ratio of CXCL13, CXCL8,CXCL10 in the diagnosis of neurosyphilis were 0.940, 0.899, 0.915, 0.963, 0.846 and 0.926, respectively. The corresponding sensitivities/specificities of CSF CXCL13, CXCL8,CXCL10 and the CSF/serum ratio of CXCL13, CXCL8,CXCL10 in diagnosis of neurosyphilis were 85.4%/89.1%, 79%/90.1% and 79.6%/91.1%, 86.6%/99%, 79%/73.3% and 86%/92.1%, respectively. Our results suggest that the elevated concentrations of CXCL13, CXCL8, and CXCL10 or their increasing CSF/serum ratios may be potential biomarkers of neurosyphilis, particularly for asymptomatic neurosyphilis. Reduced concentration of these chemokines may indicate the prognosis of antibiotic therapy.
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- 2016
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39. Genotype: A Crucial but Not Unique Factor Affecting the Clinical Phenotypes in Fabry Disease
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Wen Zhang, Hong Ren, Yan Ouyang, Xiao Li, Pingyan Shen, Yaowen Xu, Zhaohui Wang, Weiming Wang, Liyan Ni, Li Yang, Xialian Yu, Jing Xu, Xiaoxia Pan, Nan Chen, and Xiaonong Chen
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0301 basic medicine ,Male ,Gene Identification and Analysis ,lcsh:Medicine ,030105 genetics & heredity ,medicine.disease_cause ,Cornea ,Genotype ,Chronic Kidney Disease ,Medicine and Health Sciences ,Missense mutation ,lcsh:Science ,Frameshift Mutation ,Genetics ,Mutation ,Multidisciplinary ,Nonsense Mutation ,Phenotype ,Deletion Mutation ,Nephrology ,Codon, Nonsense ,Female ,Anatomy ,Research Article ,Adult ,China ,Substitution Mutation ,Missense Mutation ,Ocular Anatomy ,Nonsense mutation ,Mutation, Missense ,Biology ,Frameshift mutation ,03 medical and health sciences ,Young Adult ,Asian People ,Ocular System ,medicine ,Humans ,Mutation Detection ,Genetic Association Studies ,Point mutation ,lcsh:R ,Biology and Life Sciences ,Sequence Analysis, DNA ,medicine.disease ,Fabry disease ,030104 developmental biology ,alpha-Galactosidase ,Fabry Disease ,lcsh:Q - Abstract
Numerous α-galactosidase A (α-gal A) gene (GLA) mutations have been identified in Fabry disease (FD), but studies on genotype-phenotype correlation are limited. This study evaluated the features of GLA gene mutations and genotype-phenotype relationship in Chinese FD patients. Gene sequencing results, demographic information, clinical history, and laboratory findings were collected from 73 Chinese FD patients. Totally 47 mutations were identified, including 23 novel mutations which might be pathogenic. For male patients, those with frameshift and nonsense mutations presented the classical FD, whereas those with missense mutations presented both of classical and atypical phenotypes. Interestingly, two male patients with missense mutation p.R356G from two unrelated families, and two with p.R301Q from one family presented different phenotypes. A statistically significant association was found between the levels of α-gal A enzyme activity and ocular changes in males, though no significant association was found between residual enzyme activity level and genotype or clinical phenotypes. For female patients, six out of seven with frameshift mutations and one out of nine with missense mutation presented the classical FD, and α-gal A activity in those patients was found to be significantly lower than that of patients with atypical phenotypes (13.73 vs. 46.32 nmol/ml/h/mg). Our findings suggest that the α-gal A activity might be associated with the clinical severity in female patients with FD. But no obvious associations between activity level of α-gal A and genotype or clinical phenotypes were found for male patients.
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- 2016
40. Propylthiouracil-induced Antineutrophil Cytoplasmic Antibody (ANCA)-associated Renal Vasculitis Versus Primary ANCA-associated Renal Vasculitis: A Comparative Study
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Liyan Ni, Yong-Xi Chen, Jing Xu, Nan Chen, Xiaonong Chen, Xiaoxia Pan, Haijin Yu, Hong Ren, and Wen Zhang
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Adult ,Male ,endocrine system ,Pathology ,medicine.medical_specialty ,Adolescent ,medicine.medical_treatment ,Immunology ,Renal function ,Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis ,Kidney ,Young Adult ,chemistry.chemical_compound ,Antithyroid Agents ,Rheumatology ,medicine ,Humans ,Immunology and Allergy ,Survival rate ,Aged ,Retrospective Studies ,Anti-neutrophil cytoplasmic antibody ,Aged, 80 and over ,Creatinine ,business.industry ,Incidence ,Antithyroid agent ,Middle Aged ,medicine.disease ,Fibrosis ,Thyroid Diseases ,Survival Rate ,medicine.anatomical_structure ,chemistry ,Propylthiouracil ,Female ,business ,Vasculitis ,Glomerular Filtration Rate ,medicine.drug - Abstract
Objective.Renal involvement is frequently present in primary antineutrophil cytoplasmic antibody-associated small-vessel vasculitis (AAV) as well as propylthiouracil (PTU)-induced AAV. We analyzed the characteristics of patients with PTU-induced AAV with renal involvement and investigated the differences of the 2 diseases.Methods.Thirty-six patients with PTU-induced AAV, diagnosed from 1997 to 2010, were enrolled for study. Their data were compared with those of 174 patients with primary AAV diagnosed at the same time. Renal involvement was present in all patients.Results.There was a prominent proportion of young women with PTU-induced AAV (p < 0.01). They had lower levels of proteinuria and serum creatinine and higher estimated glomerular filtration rate (p < 0.01, p < 0.01, and p < 0.01, respectively). Clinical immunological abnormalities were less severe in patients with PTU-induced AAV. Patients with PTU-induced AAV had less organ involvement and lower Birmingham Vasculitis Assessment Score than patients with primary AAV (p < 0.01). Renal biopsies showed a lower proportion of glomeruli with crescents (p < 0.01). Interstitial inflammation was less severe in patients with PTU-induced AAV (p < 0.05). Similarly, interstitial fibrosis and tubular atrophy were less severe in patients with PTU-induced AAV (p < 0.01, p < 0.05, respectively). Renal survival and total survival were better in patients with PTU-associated vasculitis (p < 0.05, p = 0.01).Conclusion.Clinical and histopathological abnormalities were less severe in patients with PTU-induced AAV and most of them had a good prognosis.
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- 2012
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41. Transcriptional network in ovarian cancer cell line SKOV3 treated with Pinellia pedatisecta Schott extract
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Jindong Chen, Qiyu Bao, Zuyuan Xu, Jinsong Li, Jun Ying, Liyan Ni, Peizhen Li, Hanchu Wang, Teng Xu, Ying Zhang, Li Zhou, Ziqiang Wang, Hangzhi Gu, Mei Zhu, Ping Ren, Lei Yang, and Wen Zhu
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0301 basic medicine ,Cancer Research ,Pinellia ,Apoptosis ,Steroid biosynthesis ,Biology ,Bioinformatics ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,medicine ,Humans ,Gene Regulatory Networks ,Medicine, Chinese Traditional ,health care economics and organizations ,Cell Proliferation ,Ovarian Neoplasms ,Oncogene ,Plant Extracts ,Cancer ,General Medicine ,Cell cycle ,biology.organism_classification ,medicine.disease ,Molecular medicine ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Caspases ,Cancer research ,Female ,Ovarian cancer ,Apoptosis Regulatory Proteins - Abstract
Ovarian cancer is the most lethal disease among the malignant tumors of female reproductive organs. Few successful therapeutic options exist for patients with ovarian cancer. The common therapeutic methods are surgical operation, chemotherapy, radiotherapy, and combination of these treatments. In recent years, studies have indicated that Pinellia pedatisecta Schott (PPS), a traditional Chinese medicine, could inhibit tumor growth. In this study, we demonstrated that PPS extract could induce apoptosis in SKOV3 cells in a dose- and time-dependent manner. We further conducted transcriptome sequencing on PPS extract-treated SKOV3 cells along with controls, and identified 1,754 transcripts whose expression differs at least 3-fold over the controls. These differentially expressed transcripts include the apoptosis-related genes such as the caspase family members, and were significantly enriched in steroid biosynthesis in the KEGG pathway database compared with the transcriptome background. Most of the differentially expressed transcripts from this pathway were upregulated in PPS extract-treated cell line, indicating that PPS extract-induced apoptosis was accompanied by increased steroid biosynthesis (e.g. zymosterol). These results suggest that PPS extract could be a new cytostatic therapeutic agent for ovarian cancer.
- Published
- 2016
42. Revisiting Anti-phospholipase A2 Receptor Antibodies and Its Antigen as Specific Biomarkers in Idiopathic Membranous Nephropathy
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Xiao Li, Li Lin, Jing Xu, Liyan Ni, Jingyuan Xie, Nan Chen, Weiming Wang, Yaowen Xu, Wen Zhang, Xiaoxia Pan, and Hong Ren
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Antigen ,biology ,business.industry ,Nephrology ,Immunology ,biology.protein ,Medicine ,Antibody ,business ,Idiopathic Membranous Nephropathy ,Phospholipase A2 receptor - Published
- 2015
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43. Comparative genomics analysis of pKF3-94 in Klebsiella pneumoniae reveals plasmid compatibility and horizontal gene transfer
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Ziqiang Wang, Jianchao Ying, Liyan Ni, Cong Cheng, Jun Ying, Ying Zhang, Huifeng Wang, Junwan Lu, Wen Zhu, Chuanxin Zhu, Peizhen Li, Songquan Wu, Qiyu Bao, Kaibo Zhang, Teng Xu, Mei Zhu, Jinsong Li, Huiguang Yi, Zuyuan Xu, and Huifen Tou
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Microbiology (medical) ,Comparative genomics ,Genetics ,Transposable element ,Genome evolution ,lcsh:QR1-502 ,comparative genomics ,Biology ,Microbiology ,lcsh:Microbiology ,Klebsiella pneumoniae ,Plasmid ,plasmid compatibility ,plasmid ,Horizontal gene transfer ,Comparative genomic ,horizontal gene transfer ,Replicon ,Mobile genetic elements ,Gene ,Original Research - Abstract
In order to get insights into plasmid evolution and the dissemination of multidrug resistance, we performed extensive comparative genomics analyses of the Klebsiella pneumoniae plasmid pKF3-94 and some of its related plasmids. pKF3-94 is one of three plasmids isolated from the K. pneumoniae strain KF3. Of the 144 putative genes it harbors, 69 can be functionally assigned to be involved in transfer conjugation, transfer leading, antimicrobial resistance, transposon function, and plasmid replication. Comparison of plasmid replicon sequence types revealed that pKF3-94 carries two replicons that are distinct from those carried on the two sibling K. pneumonia plasmids pKF3-70 and pKF3-140, thereby allowing pKF3-94 to coexist with these latter plasmids in the same host cell. Comparative genomics analyses further showed that pKF3-94 is more similar to plasmids pK1HV and pC15-k, which were isolated from different K. pneumonia strains, than to pKF3-70 and pKF3-140. Interestingly, pK1HV contains a unique 49 kb region rich in mobile genetic elements and drug resistance genes, while pKF3-94 and pC15-k share a 15 kb homology region partitioned into a region rich in drug resistance genes and one containing a replicon. It is conceivable, therefore, that pK1HV and pC15-k have both arisen from a common pKF3-94-like plasmid. The comparisons lend further support for the role horizontal gene transfer plays in genome evolution and in the dissemination of genetic elements including drug resistance genes.
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- 2015
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44. [A comparative study on efficiency of different therapeutics methods used for obstructive sleep apnea hypopnea syndrome in children]
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Chenyi, Yu, Xiaohong, Cai, Zhengwang, Wen, Dongshi, Liang, Qingqing, Hu, Liyan, Ni, and Jian, Lin
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Adenoidectomy ,Oxygen ,Sleep Wake Disorders ,Sleep Apnea, Obstructive ,Treatment Outcome ,Cost of Illness ,Polysomnography ,Humans ,Prospective Studies ,Blood Gas Analysis ,Child ,Tonsillectomy - Abstract
To evaluate effectiveness therapeutic regimens for obstructive sleep apnea hypopnea syndrome (OSAHS) children at an acceptable cost.This study was performed at Yuying Children's Hospital of Wenzhou Medical University from Mar. 2008 to Dec. 2010. Prospective random number table method was used for the analysis; 60 children with mild OSAHS were divided into Mild OSAHS Montelukast Treatment (MM) group and Mild OSAHS Adenotonsillectomy Treatment (MAT) group. 32 children in MM group were treated with leukotriene receptor antagonists (LTRAs), while 28 children in MAT group were treated with adenotonsillectomy. Also, 58 children with moderate and severe OSAHS were divided into severe OSAHS Montelukast Treatment (SM) group and severe OSAHS Adenotonsillectomy Treatmen (SAT) group. Twenty-two children in SM group were treated with LTRAs, while 36 children in SAT group were treated with adenotonsillectomy. All selected children were evaluated by polysomnography (PSG) and Obstructive Sleep Apnea-18 (OSA-18) items before and after a six-month treatment. Both records were taken and analyzed, surgical complications and the reason for non-remission after operation were also analyzed. Two therapies were compared based on economic consideration and therapeutic effect. Result (1) PSG: A significant change of a significant change of Apnea Hypopnea Index (AHI) was observed in MM group after the treatment (before receiving the treatment 4.56 ± 1. 26, and after receiving the treatment 3. 48 ± 1. 52, t =3. 50, P0. 05). But for oxygen desaturation Index (ODI) (MM group 2. 18 ± 2. 19, and MAT group 1. 80 ± 2. 34) and Lowest Oxygen satuation (LSaO2) (MM group 91. 66 ± 2. 34, and MAT group 92. 79 ± 2. 18), there was no significant difference in MM group and MAT group after the treatment (ODI, t =0. 65, and LSaO2 t = - 1. 93, P0. 05). (2) OSA-18 scores: Significant differences were found in sleeping disorder (before 14. 81 ± 6. 28, and after 10. 56 ± 3. 57), the degree of familial stress (before 13. 56 ± 3. 54, and after 8. 97 ± 2. 96), and OSA-18 total scores (before 52. 66 ± 1. 11, and after 42. 56 6. 48) in MM group after the treatment (sleeping disorder Z - 3. 14, the degree of familial stress Z = -4. 50, and OSA-18 total scores Z= -4. 01, P0. 05). (3) In addition to the cost of drugs, groups with surgical treatment had a larger economic burden than those with LTRAs treatment. (4) Treatment was totally effective for 28 children (88%) in MM group, and 28 children (100%) in MAT group. Meanwhile, treatment also achieved an obvious effect on 2 children (9%) in SM group, and in 35 children (97%) in SAT group. In MAT group, 3 children improved (11%). And in SAT group, 7 children improved (19%), but treatment was found to be ineffective in 1 case (3%). Among those effective and ineffective cases in groups with surgical treatment, there were 9 children with nasal diseases.(1) Surgical treatment is recommended as the first choice for children with moderate and severe OSAHS. And for those who also suffer from nasal diseases, treatment combining drugs with surgery is necessary. (2) LTRAs therapy has a good effect for mild OSAHS. Surgery is also recommended when drugs could not achieve any obvious improvement in clinical symptoms of children with mild OSAHS.
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- 2015
45. Molecular Epidemiology and Characterization of Genotypes of Acinetobacter baumannii Isolates from Regions of South China
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Jun, Ying, Junwan, Lu, Li, Zong, Ailing, Li, Ruowang, Pan, Cong, Cheng, Kunpeng, Li, Liqiang, Chen, Jianchao, Ying, Huifen, Tou, Chuanxin, Zhu, Teng, Xu, Huiguang, Yi, Jinsong, Li, Liyan, Ni, Zuyuan, Xu, Qiyu, Bao, and Peizhen, Li
- Subjects
Acinetobacter baumannii ,China ,Cross Infection ,Molecular Epidemiology ,Genotype ,Anti-Bacterial Agents ,Bacterial Typing Techniques ,Electrophoresis, Gel, Pulsed-Field ,Drug Resistance, Multiple, Bacterial ,Multigene Family ,Humans ,Alleles ,Phylogeny ,Acinetobacter Infections ,Multilocus Sequence Typing - Abstract
The aim of this study was to analyze the molecular epidemiologic characteristics of Acinetobacter baumannii. A total of 398 isolates were collected in 7 regions of South China from January to June of 2012. Drug sensitivity was tested toward 15 commonly used antibiotics; thus, 146 multi-drug-resistant strains (resistant to more than 7 drugs) were identified, representing 36.7% of all isolates. Pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) were used for molecular subtyping. According to the PFGE results (with a cutoff of 70% similarity for the DNA electrophoretic bands), 146 strains were subdivided into 15 clusters, with cluster A being the largest (33.6%, distributed in all districts except Jiaxing). Cluster B was also widespread and included 14.4% of all strains. In addition, MLST results revealed 11 sequence types (ST), with ST208 being the most prevalent, followed by ST191 and ST729. Furthermore, 4 novel alleles and 6 novel STs were identified. Our results showed that multi-drug-resistant A. baumannii in South China shares the origin with other widespread strains in other countries. The nosocomial infections caused by A. baumannii have been severe in South China. Continuous monitoring and judicious antibiotic use are required.
- Published
- 2015
46. GSTM1 null genotype is a risk factor for laryngeal cancer
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Xuejun, Liu, Qijun, Fan, Liyan, Ni, Fanli, Liu, Saiyu, Huang, Jinjian, Gao, and Bobei, Chen
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integumentary system ,Original Article - Abstract
It remains unclear whether the Glutathione S-transferase M1 (GSTM1) null genotype influence laryngeal cancer development. This study aimed to investigate the interactions among GSTM1 genotype with regard to laryngeal cancer development. We searched online electronic databases (PubMed, EMBASE and CNKI). The strength of association between the GSTM1 genotype and laryngeal cancer risk was assessed by calculating OR with 95% CI. Finally, a total of 25 case-control studies with 2999 cases and 4942 controls on the association between GSTM1 genotype and laryngeal cancer risk were included in this meta-analysis. The overall result showed that the GSTM1 null genotype was related to an increased risk of laryngeal cancer (OR = 1.34; 95% CI, 1.09-1.63). Subgroup analysis was performed according to ethnicity. The results showed that Asians had an increased risk of laryngeal cancer (OR = 1.90; 95% CI, 1.40-2.57), while no significant increased risk was observed in Caucasians (OR = 1.15; 95% CI, 0.97-1.36). In conclusion, this meta-analysis suggested that GSTM1 null genotype was significantly associated with increased laryngeal cancer risk.
- Published
- 2015
47. MP311CKD-EPI EQUATION BASED EGFR IS MORE ACCURATE THAN GATE'S GFR IN CHINESE POPULATION
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Nan Chen, Jingyuan Xie, Hong Ren, Danshu Xie, Wen Zhang, Xialian Yu, Hao Shi, Weiming Wang, and Liyan Ni
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Oncology ,Transplantation ,medicine.medical_specialty ,Chinese population ,Nephrology ,business.industry ,Internal medicine ,medicine ,business - Published
- 2017
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48. Insights into monkeypox pathophysiology, global prevalence, clinical manifestation and treatments
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Liyan Niu, Dingfa Liang, Qin Ling, Jing Zhang, Ziwen Li, Deju Zhang, Panpan Xia, Zicheng Zhu, Jitao Lin, Ao Shi, Jianyong Ma, Peng Yu, and Xiao Liu
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monkeypox virus (MPV) ,origin ,pathophysiology ,global prevalence ,clinical manifestation ,treatment ,Immunologic diseases. Allergy ,RC581-607 - Abstract
On 23rd July 2022, the World Health Organization (WHO) recognized the ongoing monkeypox outbreak as a public medical crisis. Monkeypox virus (MPV), the etiological agent of monkeypox, is a zoonotic, linear, double-stranded DNA virus. In 1970, the Democratic Republic of the Congo reported the first case of MPV infection. Human-to-human transmission can happen through sexual contact, inhaled droplets, or skin-to-skin contact. Once inoculated, the viruses multiply rapidly and spread into the bloodstream to cause viremia, which then affect multiple organs, including the skin, gastrointestinal tract, genitals, lungs, and liver. By September 9, 2022, more than 57,000 cases had been reported in 103 locations, especially in Europe and the United States. Infected patients are characterized by physical symptoms such as red rash, fatigue, backache, muscle aches, headache, and fever. A variety of medical strategies are available for orthopoxviruses, including monkeypox. Monkeypox prevention following the smallpox vaccine has shown up to 85% efficacy, and several antiviral drugs, such as Cidofovir and Brincidofovir, may slow the viral spread. In this article, we review the origin, pathophysiology, global epidemiology, clinical manifestation, and possible treatments of MPV to prevent the propagation of the virus and provide cues to generate specific drugs.
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- 2023
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49. Effects of SNPs (CYP1B1*2 G355T, CYP1B1*3 C4326G, and CYP2E1*5 G-1293C), Smoking, and Drinking on Susceptibility to Laryngeal Cancer among Han Chinese
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Shiyu Liao, Jianhua Jin, Liyan Ni, Qiyu Bao, and Faming Lin
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Lifestyle Causes of Cancer ,Male ,Risk ,medicine.medical_specialty ,Pathology ,Alcohol Drinking ,Genetic Causes of Cancer ,lcsh:Medicine ,Single-nucleotide polymorphism ,Lower risk ,Gastroenterology ,Polymorphism, Single Nucleotide ,Asian People ,Risk Factors ,Internal medicine ,Genotype ,medicine ,Genetic predisposition ,Genetics ,Cancer Genetics ,Medicine and Health Sciences ,Humans ,Genetic Predisposition to Disease ,lcsh:Science ,Laryngeal Neoplasms ,Alleles ,Clinical Genetics ,Multidisciplinary ,business.industry ,Cancer Risk Factors ,lcsh:R ,Smoking ,Case-control study ,Cancer ,Biology and Life Sciences ,Human Genetics ,Cytochrome P-450 CYP2E1 ,Laryngeal Neoplasm ,Middle Aged ,medicine.disease ,Oncology ,Haplotypes ,Case-Control Studies ,Cohort ,Cytochrome P-450 CYP1B1 ,lcsh:Q ,Female ,business ,Research Article - Abstract
Purpose This study was conducted to explore the effects of genetic polymorphisms (CYP1B1*2 G355T, CYP1B1*3 C4326G, and CYP2E1*5 G-1293C) and environmental factors (smoking and drinking) on susceptibility to laryngeal cancer in a Han Chinese study group. Methods This case-control study included 552 Han Chinese patients diagnosed with laryngeal cancer and 666 healthy control subjects of the same ethnicity, similar age, and gender. Genetic polymorphisms were examined using multi-PCR and Matrix Assisted Laser Desorption Ionization - Time of Flight (MALDI-TOF MS) methodology. The association of these genetic and environmental factors with susceptibility to laryngeal cancer was evaluated using a statistical approach. Results The frequencies of all three polymorphisms in the patient cohort were significantly different from those in the control cohort. Compared to the control cohort, carriers of variant alleles of CYP1B1*2 355T and CYP2E1*5 -1293C showed a higher risk for developing laryngeal cancer (for CYP1B1*2 355T, adjusted OR = 2.657, P
- Published
- 2014
50. Analyzing fatal cases of Chinese patients with primary antineutrophil cytoplasmic antibodies-associated renal vasculitis: a 10-year retrospective study
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Xiaoxia Pan, Pingyan Shen, Hong Ren, Liyan Ni, Nan Chen, Haijin Yu, Xiaonong Chen, Xiao Li, Yaowen Xu, Wen Zhang, Weiming Wang, and Yong-Xi Chen
- Subjects
Male ,Vasculitis ,Pathology ,medicine.medical_specialty ,Poor prognosis ,urologic and male genital diseases ,Infections ,RENAL VASCULITIS ,Antibodies, Antineutrophil Cytoplasmic ,Asian People ,immune system diseases ,Cause of Death ,Medicine ,Humans ,cardiovascular diseases ,Renal Insufficiency ,skin and connective tissue diseases ,Anti-neutrophil cytoplasmic antibody ,Aged ,Retrospective Studies ,Aged, 80 and over ,business.industry ,Age Factors ,Retrospective cohort study ,General Medicine ,Middle Aged ,medicine.disease ,respiratory tract diseases ,Nephrology ,Female ,Kidney Diseases ,Cardiology and Cardiovascular Medicine ,business ,Systemic vasculitis - Abstract
Background/Aims: Primary antineutrophil cytoplasmic antibodies (ANCA)-associated systemic vasculitis (AASV) used to have poor prognosis, and renal involvement is its most common manifestation. Few studies have been published focusing on AASV patients with poor prognosis. Methods: From 1997 to 2006, 101 patients with ANCA-associated renal vasculitis (70 microscopic polyangiitis, MPA; 14 Wegener’s granulomatosis, WG; 3 Churg-Strauss syndrome, CSS; 14 renal limited vasculitis, RLV) were diagnosed in Shanghai Ruijin Hospital and 26 deaths were recorded among them. Patients’ data were retrospectively analyzed. Results: Patients with WG, MPA and RLV made up for 23.1% (6/26), 65.4% (17/26) and 11.5% (3/26) of all deaths. No deaths were observed among CSS patients. Infection alone accounted for 13 deaths. Infection together with pulmonary involvement of active vasculitis accounted for 3. Organ-specific involvement of active vasculitis alone caused 8 deaths. Others died of acute myocardial infarction or gastric carcinoma. Compared with patients who survived, nonsurvivors had more severe renal insufficiency and older age (p < 0.01). There was no significant difference regarding clinical presentation at diagnosis and cause of death between patients who survived first remission-induction treatment and those who did not. Infection remained the major cause of death. Conclusion: Infection is the major cause of death in patients with ANCA-associated renal vasculitis, and treatment response might not correlate to severity of disease in patients with poor prognosis. Rational use of immunosuppressants could improve the prognosis.
- Published
- 2008
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