1. Interrogation of genomes by molecular copy-number counting (MCC)
- Author
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Grace Tin-Yun Chung, Terence H. Rabbitts, Richard Pannell, Angelika Daser, Madan Thangavelu, Louise Sparrow, Paul H. Dear, and Alan Forster
- Subjects
Cloning ,Genetics ,Base pair ,Breakpoint ,Chromosomal translocation ,Cell Biology ,Biology ,Biochemistry ,Genome ,chemistry.chemical_compound ,genomic DNA ,chemistry ,Genomic library ,Molecular Biology ,DNA ,Biotechnology - Abstract
Human cancers and some congenital traits are characterized by cytogenetic aberrations including translocations, amplifications, duplications or deletions that can involve gain or loss of genetic material. We have developed a simple method to precisely delineate such regions with known or cryptic genomic alterations. Molecular copy-number counting (MCC) uses PCR to interrogate miniscule amounts of genomic DNA and allows progressive delineation of DNA content to within a few hundred base pairs of a genomic alteration. As an example, we have located the junctions of a recurrent nonreciprocal translocation between chromosomes 3 and 5 in human renal cell carcinoma, facilitating cloning of the breakpoint without recourse to genomic libraries. The analysis also revealed additional cryptic chromosomal changes close to the translocation junction. MCC is a fast and flexible method for characterizing a wide range of chromosomal aberrations. *Note: Correspondence should be addressed to M. Thangavelu (mt370@hutchison-mrc.cam.ac.uk) instead of T. H. Rabbitts. The error has been corrected in the PDF version of the article.
- Published
- 2006
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