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Organisms that locomote by propagating waves of body bending can maintain performance across heterogeneous environments by modifying their gait frequency $\omega$ or wavenumber $k$. We identify a unifying relationship between these parameters for overdamped undulatory swimmers (including nematodes, spermatozoa, and mm-scale fish) moving in diverse environmental rheologies, in the form of an active `dispersion relation' $\omega\propto k^{\pm2}$. A model treating the organisms as actively driven viscoelastic beams reproduces the experimentally observed scaling. The relative strength of rate-dependent dissipation in the body and the environment determines whether $k^2$ or $k^{-2}$ scaling is observed. The existence of these scaling regimes reflects the $k$ and $\omega$ dependence of the various underlying force terms and how their relative importance changes with the external environment and the neuronally commanded gait.

Limbless locomotors, from microscopic worms to macroscopic snakes, traverse complex, heterogeneous natural environments typically using undulatory body wave propagation. Theoretical and robophysical models typically emphasize body kinematics and active neural/electronic control. However, we contend that because such approaches often neglect the role of passive, mechanically controlled processes (those involving "mechanical intelligence"), they fail to reproduce the performance of even the simplest organisms. To uncover principles of how mechanical intelligence aids limbless locomotion in heterogeneous terradynamic regimes, here we conduct a comparative study of locomotion in a model of heterogeneous terrain (lattices of rigid posts). We used a model biological system, the highly studied nematode worm Caenorhabditis elegans, and a robophysical device whose bilateral actuator morphology models that of limbless organisms across scales. The robot's kinematics quantitatively reproduced the performance of the nematodes with purely open-loop control; mechanical intelligence simplified control of obstacle navigation and exploitation by reducing the need for active sensing and feedback. An active behavior observed in C. elegans, undulatory wave reversal upon head collisions, robustified locomotion via exploitation of the systems' mechanical intelligence. Our study provides insights into how neurally simple limbless organisms like nematodes can leverage mechanical intelligence via appropriately tuned bilateral actuation to locomote in complex environments. These principles likely apply to neurally more sophisticated organisms and also provide a design and control paradigm for limbless robots for applications like search and rescue and planetary exploration., Comment: Published in Science Robotics

We apply topological data analysis to the behavior of C. elegans, a widely-studied model organism in biology. In particular, we use topology to produce a quantitative summary of complex behavior which may be applied to high-throughput data. Our methods allow us to distinguish and classify videos from various environmental conditions and we analyze the trade-off between accuracy and interpretability. Furthermore, we present a novel technique for visualizing the outputs of our analysis in terms of the input. Specifically, we use representative cycles of persistent homology to produce synthetic videos of stereotypical behaviors., Comment: 27 pages, 15 figures/tables

Self-propelling organisms locomote via generation of patterns of self-deformation. Despite the diversity of body plans, internal actuation schemes and environments in limbless vertebrates and invertebrates, such organisms often use similar travelling waves of axial body bending for movement. Delineating how parameters (wave amplitudes, frequencies) lead to locomotor performance (e.g. speed, energy, turning capabilities) remains challenging. Here we show that a geometric framework that replaces laborious calculation with a diagrammatic scheme is well suited to discovery and comparison of optimal patterns of wave dynamics in diverse living systems. We focus on a regime of undulatory locomotion, that of highly damped environments, which is applicable not only to small organism movement in viscous fluids, but also larger animals moving in frictional fluids (sand) and on frictional ground. We find that the travelling wave dynamics used by mm-scale nematode worms and cm-scale desert dwelling snakes and lizards can be described by time series of the weights associated with two principal modes. The approximately circular closed path trajectories of mode weights in a self-deformation space enclose near-maximal surface integral (geometric phase) for organisms spanning two decades in body length. We hypothesize that such trajectories are targets of control (which we refer to as ``serpenoid templates"). Further, the geometric approach reveals how seemingly complex behaviors such as turning in worms and sidewinding snakes can be described as modulations of templates. Thus, the use of differential geometry in living systems can assist in the growth of comparative neuromechanics, allowing a common description of locomotion across taxa and providing hypotheses for function at lower levels of organization.

Deep phenotyping is an emerging conceptual paradigm and experimental approach that seeks to measure many aspects of phenotypes and link them to understand the underlying biology. Successful deep phenotyping has mostly been applied in cultured cells, less so in multicellular organisms. Recently, however, it has been recognized that such an approach could lead to better understanding of how genetics, the environment, and stochasticity affect development, physiology, and behavior of an organism. Over the last 50 years, the nematode Caenorhabditis elegans has become an invaluable model system for understanding the role of the genes underlying a phenotypic trait. Recent technological innovation has taken advantage of the worm physical attributes to increase the throughput and informational content of experiments. Coupling these technical advancements with computational or analytical tools has enabled a boom in deep phenotyping studies of C. elegans. In this review, we highlight how these new technologies and tools are digging into the biological origins of complex multidimensional phenotypes seen in the worm.

Inference efficiency is the predominant consideration in designing deep learning accelerators. Previous work mainly focuses on skipping zero values to deal with remarkable ineffectual computation, while zero bits in non-zero values, as another major source of ineffectual computation, is often ignored. The reason lies on the difficulty of extracting essential bits during operating multiply-and-accumulate (MAC) in the processing element. Based on the fact that zero bits occupy as high as 68.9% fraction in the overall weights of modern deep convolutional neural network models, this paper firstly proposes a weight kneading technique that could eliminate ineffectual computation caused by either zero value weights or zero bits in non-zero weights, simultaneously. Besides, a split-and-accumulate (SAC) computing pattern in replacement of conventional MAC, as well as the corresponding hardware accelerator design called Tetris are proposed to support weight kneading at the hardware level. Experimental results prove that Tetris could speed up inference up to 1.50x, and improve power efficiency up to 5.33x compared with the state-of-the-art baselines.

Series of short contributions that are part of Nobel Symposium 162 - Microfluidics arXiv:1712.08369., Comment: Nobel Symposium 162, Stockholm, Sweden, 2017 arXiv:1712.08369v1 Report-no: Nobel162/2017/00