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TerraRossa (POR01PG20–12) is a mid-season specialty potato, released by Oregon State University, and is a product of the Northwest Potato Variety (Tri-State) Development Program. This cultivar is unique among commercially available potato cultivars in that plants produce small- to medium-sized smooth, oblong- to long-shaped tubers with red skin and red flesh. Total tuber yields of TerraRossa are similar to Dark Red Norland and less than Red La Soda. Average tuber size (136 g) is less than both of the comparison cultivars, reflecting inherent differences in tuber size distribution. TerraRossa tubers have total antioxidant levels higher than traditional white fresh varieties and comparable to the All Blue purple potato, known for its high antioxidant levels. Sensory evaluations of TerraRossa tubers indicated that it has good culinary attributes following boiling, baking, and microwaving. Potato chips made from TerraRossa tubers retained their unique red color, which represents a novelty in the chipping industry. TerraRossa could be a good candidate for the organic sector due to its tolerance to common scab (Streptomyces scabies) and tuber late blight (Phytophthora infestans) and its resistance to golden cyst nematode (Globodera rostochiensis). Due to its high yields, high chipping quality, good culinary properties, high antioxidant content and disease resistance, TerraRossa is a good candidate for opening new specialty type markets, adding diversity to the marketplace.

Sage Russet was released in 2009 by Oregon State University, in cooperation with the USDA-ARS and the Agricultural Experiment Stations of Idaho and Washington. It is a product of the Northwest Potato Variety (Tri-State) Development Program. Sage Russet has a medium-early maturity and produces long, somewhat flattened tubers with medium russeting of the skin. Total yields of Sage Russet are similar to those of Russet Burbank and Ranger Russet, but are significantly higher than those of Russet Norkotah. Sage Russet has significantly higher U.S. No.1 yields than Russet Burbank, Russet Norkotah, and Ranger Russet. It can be grown as an early or late crop with high U.S. No.1 yields and minimal internal defects. It achieved very high merit scores in processing and fresh market in Western Regional trials and can be considered for both markets. Sage Russet has a medium to high fertility requirements with high nitrogen use efficiency and medium storage capability. Sage Russet has moderate specific gravity and produces lighter fry color than the industry standard varieties. The color of fried strips following tuber storage at 4.4 °C and 7.2 °C is significantly lighter for Sage Russet than the control varieties, indicating good cold sweetening resistance. Chemical analyses have shown that Sage Russet has higher protein and vitamin C content than control varieties. Sage Russet is moderately resistant to early dying, early blight, and common scab, is resistant to tuber late blight, but susceptible to Fusarium wilt and is prone to shatter bruise.

Yukon Nugget is a mid-season specialty potato with yellow flesh, yellow skin and distinct red eyes. Yukon Nugget was developed to provide the potato industry with an alternative to Yukon Gold. The overall tuber size profile of Yukon Nugget is smaller and more uniform than Yukon Gold and it typically produces an average of four more tubers per plant than Yukon Gold. Yukon Nugget tubers are ideal for boiling, baking, and microwaving, and have culinary and nutritional qualities generally similar to Yukon Gold. Yukon Nugget has extreme resistance to Potato Virus X due to presence of PVX resistance allele Rx1. It also has moderate resistance to powdery scab and tuber late blight. Yukon Nugget has less vascular and stem end discoloration and less hollow heart than Yukon Gold. Yukon Nugget is similar to Yukon Gold in terms of susceptibility to several major potato diseases, such as PVY, PLRV, and foliage late blight. It was released in 2013 by the Agricultural Experiment Stations of Oregon, Idaho and Washington and the USDA-ARS, and is a product of the Pacific Northwest (Tri-State) Potato Variety Development Program.

Pigeonpea [Cajanus cajan (L.) Millsp.] seed stored in triple layer Purdue Improved Cowpea Storage (PICS) bags for eight months retained germination and seed integrity significantly better than seed stored in traditional gunny bags. PICS bags prevented major damage caused by bruchids (Callosobruchus maculatus F.), while grain stored in gunny bags suffered severe losses. The aflatoxin levels in stored seed were low and not significantly different between the two storage systems. The levels of O2 in PICS bags artificially infested with C. maculatus dropped rapidly during the first month of storage while the levels of CO2 increased. Even in absence of bruchids (noninfested seed) PICS bags preserved seed germination for extended periods of time better than gunny bags; possibly due to the higher and more stable relative humidity inside the PICS bags. Higher seed germination would result in improved plant stands in the field and subsequent higher yields and increased productivity. Thus, PICS bags have shown potential to positively impact the economy of pigeonpea farmers in the semi-arid tropics.

Considering the increasing demand for pigeonpea [Cajanus cajan (L.) Millsp.], especially in India, breeders have realized the need to develop high-yielding, super-early maturing (

SUMMARYPigeonpea is an important legume crop of the semi-arid tropics. In India, pigeonpea is mostly grown in areas prone to waterlogging, resulting in major production losses. It is imperative to identify genotypes that show tolerance at critical crop growth stages to prevent these losses. A selection of 272 diverse pigeonpea accessions was evaluated for seed submergence tolerance for different durations (0, 120, 144, 168 and 192 h) under in vitro conditions in the laboratory. All genotypes exhibited high (0·79–0·98) survival rates for up to 120 h of submergence. After 192 h of submergence, the hybrids as a group exhibited significantly higher survival rates (0·79) than the germplasm (0·71), elite breeding lines (0·68) and commercial varieties (0·58). Ninety-six genotypes representing the phenotypic variation observed during laboratory screening were further evaluated for waterlogging tolerance at the early seedling stage using pots, and survival rates were recorded for 8 days after completion of the stress treatment. Forty-nine of these 96 genotypes, representing the phenotypic variation for waterlogging tolerance, were chosen in order to evaluate their performance under natural field conditions. The following cultivated varieties and hybrids were identified as tolerant after three levels of testing (in vitro, in pots and in the field): ICPH 2431, ICPH 2740, ICPH 2671, ICPH 4187, MAL 9, LRG 30, Maruti, ICPL 20128, ICPL 332, ICPL 20237, ICPL 20238, Asha and MAL 15. These materials can be used as sources of waterlogging tolerance in breeding programmes.

Purple Pelisse is a specialty ‘fingerling’ potato with purple skin and dark purple flesh. It has medium maturity and sets a large number of smooth, small, fingerling-shaped tubers. The tubers have medium specific gravity and high levels of antioxidants. This potato variety is mainly intended for the fresh market but it can also be used for processing; chips made from Purple Pelisse tubers retain their bright purple color and have a pleasant taste. Purple Pelisse is moderately resistant to common scab and potato virus Y and susceptible to most of the other common potato diseases. Purple Pelisse resulted from a cross between NDOP5847-1 and bulked pollen of red-fleshed potatoes. It was first selected from seedling tubers planted and grown at Madras, Oregon in 2001 and was subsequently evaluated for six additional years in public and industry trials throughout the western U.S, including Western Regional Red/Specialty Trials in 2006 and 2007. Purple Pelisse was officially released as a variety in 2009 by the Pacific Northwest (Tri-State) Potato Variety Development Program.

Fusarium wilt is an important disease of pigeonpea [Cajanus cajan (L.) Millsp.] and it can cause severe yield losses. Chemical control of this disease is difficult and expensive; therefore, cultivation of resistant varieties/hybrids is the most efficient strategy for enhancing the production. In the present study, by using a wilt susceptible cytoplasmic-nuclear male-sterile line and four wilt resistant fertility restorers, one dominant and one recessive gene with dominant suppressive epistatic effects were found responsible for controlling resistance to Fusarium wilt. Considering the annual losses and wide spread nature of wilt diseases in pigeonpea, it is imperative that all the inbred and hybrid cultivars have high level of resistance to this disease. The presence of dominant gene for resistance will increase the efficiency of breeding wilt resistant cultivars because it will yield greater proportion of resistant genotypes in segregating generations. In hybrid breeding also, the presence of dominant gene for wilt resistance will be an advantage. The transfer of this gene in female hybrid parents will ease the breeding of wilt resistant hybrids because this will allow the use of both wilt resistant as well as susceptible restorers in generating wilt resistant hybrid combinations.

Owyhee Russet (AO96160-3) originated from a cross between A89384-10 and A89512-3 in 1996. Owyhee Russet was released in 2009 by Oregon State University, in cooperation with the USDA-ARS and the Agricultural Experiment Stations of Idaho and Washington and is a product of the Northwest Potato Variety (Tri-State) Development Program. Owyhee Russet has semi-erect medium sized vines with medium to late maturity. The tubers are long, with a tan skin, medium russeting, and attractive tuber appearance for fresh market. Owyhee Russet was evaluated in several locations across the Northwest for more than 15 years. Total yield of Owyhee Russet is similar to that of Russet Burbank and Ranger Russet but significantly higher than Russet Norkotah. U.S. No.1 tuber yield of Owyhee Russet is significantly higher than Russet Burbank and Russet Norkotah, resulting in substantially higher marketable yield. Owyhee Russet tubers have significantly higher specific gravity than Russet Burbank and Russet Norkotah. Fry color following tuber storage at 4°C and 9°C is significantly lighter for Owyhee Russet than the comparison varieties. Relative strengths include high yield with a very high proportion of U.S. No.1 tubers, good tuber appearance and excellent processing quality, resistance to cold sweetening, common scab and Fusarium dry rot. Weaknesses include susceptibility to foliar and tuber late blight and susceptibility to metribuzin herbicide injury. Allelic patterns of five SSR markers have shown that Owyhee Russet has a distinctive DNA genetic fingerprint from its russet type reference varieties which are Ranger Russet, Russet Burbank, and Russet Norkotah.

Palisade Russet is a medium-late maturing, lightly russeted potato cultivar notable for its resistance to late blight (Phytophthora infestans) infection of foliage and tuber. Palisade Russet is suitable for processing with low tuber glucose concentrations observed following long-term storage at a temperature as low as 5.6°C with consistently acceptable fry color scores (USDA value ≤2.0) following storage at temperatures of 5.6 to 8.9°C. Reducing sugars are also maintained uniformly throughout the tuber, resulting in a low incidence of sugar ends in French fries relative to standard processing cultivars such as Russet Burbank and Ranger Russet. Palisade Russet has shown high specific gravities in western production regions of the U.S. which may limit its acceptance by the western processing industry. However, in potato production regions with inherently low specific gravities, Palisade Russet could have potential as a processing cultivar. In full-season trials conducted in Idaho, Oregon, and Washington over a 5 year period, the average total yield of Palisade Russet across all three states was very similar to yields observed for Ranger Russet and Russet Burbank. However, the U.S. No. 1 yield of Palisade Russet was 3% and 31% higher relative to Ranger Russet and Russet Burbank, respectively. In addition to late blight, Palisade Russet is also resistant to Verticillium wilt, black dot, and pink rot, and has a moderate level of resistance to net necrosis, PVY, and early blight of both the foliage and tuber. The disease resistances of Palisade Russet make it a good candidate for organic production, or for use by growers seeking reduced pesticide inputs. Palisade Russet displays a low incidence of second growth and growth cracks, especially relative to Russet Burbank, and is intermediate between Ranger Russet and Russet Burbank for incidence of hollow heart/brown center. Blackspot bruise expression for Palisade Russet is less pronounced than for either Ranger Russet or Russet Burbank, however it is slightly more susceptible to shatter bruise. Palisade Russet was released in 2011 by the USDA-ARS and the Agricultural Experiment Stations of Idaho, Oregon, and Washington, and is a product of the Pacific Northwest Potato Variety (Tri-State) Development Program.

To enhance the productivity of pigeonpea (Caja- nus cajan (L.) Millspaugh) a hybrid breeding technology, based on the cytoplasmic nuclear male-sterility (CMS) system and partial natural outcrossing, is currently been used. However, there are diffi culties to maintain genetic purity of the hybrids and their parents. The incorpo- ration of an easily identifi able morphological marker (naked eye polymorphism (NEP)) could be used to determine seed purity. The morpho- logical marker selected for this study, obcordate leaf, is not present in cultivated pigeonpea; it is inherited as a single recessive gene and can be observed soon after planting (approx. 6 wk). To incorporate the obcordate leaf shape into hybrid parents, the trait was transferred from the germ- plasm accession ICP 5529 into male-sterile (A lines) and the corresponding maintainers (B lines). The hybrids derived from crosses involv- ing obcordate leaf A lines and normal leaf fertil- ity restorers (R lines) were fully fertile and had normal lanceolate leaves; thus the difference between A line and hybrids was clear. The use of obcordate leaf as a NEP marker in pigeonpea would contribute to preserve parental line purity and confi rm hybrid status.

Clearwater Russet is a medium-late maturing, russet-skinned, potato cultivar suitable for processing or fresh pack. It is notable for having a low incidence of external defects that contributes to its high U.S. No 1 yield relative to the dual-purpose industry standard, Russet Burbank. Clearwater Russet also maintains low glucose concentrations in its tubers during long-term storage making it an exceptional processing variety. With its low incidence of sugar ends and cold-induced sweetening resistance, Clearwater Russet can be stored at a temperature of 7.2°C for up to 250 days without the need for reconditioning; fry color from this storage regime is consistently ≤1.0 (USDA Fry Color Scale). This cultivar is also notable for its high tuber protein content, which was 33% greater than that of Russet Burbank. In full-season trials conducted over a 3-year period in California, Colorado, Idaho, Oregon, and Washington, Clearwater Russet had total yields slightly lower than Ranger Russet and Russet Burbank, but averaged 1% and 33% higher U.S. No. 1 yields, respectively, across all states. Average specific gravity of Clearwater Russet is comparable to Ranger Russet and significantly higher than Russet Burbank. Clearwater Russet is resistant to potato virus X (PVX) and tuber late blight and is moderately resistant to Verticillium wilt, common scab, and the common strain of potato virus Y (PVYO). Symptoms of infection with two necrotic strains of PVY were not observed in tubers of Clearwater Russet or Russet Burbank, but were observed in Ranger Russet. Blackspot bruise reaction for Clearwater Russet is less pronounced than for either Ranger Russet or Russet Burbank. The incidence of hollow heart in Clearwater Russet is intermediate between Ranger Russet and Russet Burbank. Internal brown spot has been noted as a problem for Clearwater Russet in the Columbia Basin of Oregon, but has not been observed as problematic in other growing regions. Clearwater Russet was released in 2008 by the USDA-ARS and the Agricultural Experiment Stations of Idaho, Oregon, and Washington, and is a product of the Pacific Northwest Potato Variety (Tri-State) Development Program.

Classic Russet is a medium maturing potato cultivar with rapid tuber bulking making it suitable for early harvest, as well as full-season production. Classic Russet is notable for its attractive tubers with medium russet skin and excellent culinary characteristics. It resulted from a 1995 cross between Blazer Russet and Summit Russet and was released in 2009 by the USDA-ARS and the Agricultural Experiment Stations of Idaho, Oregon and Washington and is a product of the Northwest Potato Variety (Tri-State) Development Program. Classic Russet also shows potential as an early season processing cultivar, with fry color comparable to Russet Burbank and Ranger Russet. Classic Russet total yields were comparable to Russet Norkotah and Ranger Russet in early harvest trials and comparable to Ranger Russet and Russet Burbank in full season trials. When averaged across sites in early harvest or full season trials, U.S. No. 1 yields of Classic Russet were generally greater than those of Russet Norkotah, Ranger Russet, and Russet Burbank. Protein content for Classic Russet is relatively high, averaging 22% higher than Ranger Russet, 32% higher than Russet Burbank and 24% higher than Russet Norkotah. Specific gravity of Classic Russet in early harvest trials was comparable to Russet Norkotah but lower than Ranger Russet and was similar to Russet Burbank in full season trials. The incidence of hollow heart in Classic Russet is low, similar to that of Ranger Russet. It is less susceptible to blackspot bruise than Russet Burbank, Ranger Russet and Russet Norkotah but shatter bruise can be a concern if not matured properly prior to harvest. Classic Russet is moderately resistant to common scab and dry rot and is moderately susceptible to foliar and tuber infections of early blight and symptoms of corky ringspot. It is susceptible to Verticillium wilt, soft rot, foliar and tuber late blight, PLRV and PLRV net necrosis, and the common strain of potato virus Y (PVY°).

DNA fingerprinting is a valuable tool for plant cultivar identification and discrimination. The use of simple sequence repeat (SSR) markers for DNA fingerprinting of potatoes could benefit the declaration of distinctiveness of new potato clones for plant variety protection (PVP), granting the Plant Breeder's Rights and the legal protection of new cultivars. A total of 54 tetraploid potato clones, including new cultivars released by Oregon State University under the umbrella of the Pacific Northwest Tri-State Potato Variety Development Program and a set of common commercial cultivars, were analyzed using 13 SSR markers. The SSR amplification products were separated by electrophoresis on a LI-COR 4300 DNA analyzer system and then compiled using the SAGA Generation 2 software. These 13 SSRs were able to distinguish all clones; a reduced subset of 6 SSRs with the highest PIC (polymorphic information content) value were also sufficient to distinguish all 54 potato genotypes. Therefore, this subset of 6 SRRs markers could be a used for legal protection of newly released potato cultivars as part of the cultivar description for PVP.

Potato virus Y (PVY, Potyvirus) is the most harmful disease in cultivated potatoes, affecting tuber seed production, tuber yield and quality. The most common method to limit PVY is to plant certified potato seed with low virus levels. However, milder foliar symptoms caused by some of the PVY strains, or no foliar symptoms in some asymptomatic potato cultivars makes visual detection of PVY difficult and increases the levels of PVY in certified seed. In addition, insecticides are ineffective to control PVY due to the non-persistent transmission of the virus by the aphids. The use of host plant resistance provides a cost-effective and environmentally friendly alternative. Extreme non-strain specific PVY resistant genes derived from S. tuberosum ssp. andigena (Ry adg gene) and from S. stoloniferum (Ry sto gene) have been introgressed into tetraploid Tri-State potato clones. Genetic mapping efforts located the extreme resistant Ry adg gene on Chr. XI and the Ry sto gene on Chr. XII and PCR-based markers linked to those genes have been previously developed. We have validated the presence and transmission of the Ry adg and Ry sto genes in our clones and applied marker-assisted selection (MAS) in our tetraploid breeding program to expedite the development of PVY resistant potato cultivars.

Highland Russet is a late-season potato variety with light russet skin notable for its high yield of uniform U.S. No. 1 tubers, and good processing and culinary qualities. It resulted from a 1990 cross between Ranger Russet and Russet Legend and has been evaluated for over 15 years in public and industry trials throughout the western U.S. Highland Russet was released in 2006 by the USDA-ARS and the Agricultural Experiment Stations of Idaho, Oregon and Washington and is a product of the Northwest Potato Variety (Tri-State) Development Program. It is suitable for processing into French fries and other frozen potato products and due to its large blocky shape, recovers a high proportion of fries per unit weight of tubers. Fry color and processing ratings for Highland Russet were similar to Ranger Russet and Russet Burbank but fry color uniformity was higher than either of the standard varieties. In full-season trials conducted over a three-year period in the states of Idaho, Oregon, Washington, Colorado, and California; Highland Russet averaged 7% and 9% higher total yields and 21% and 52% higher U.S. No. 1 yields than Ranger Russet and Russet Burbank, respectively. It has moderately high specific gravity, with values similar to Ranger Russet and higher than Russet Burbank. Highland Russet is moderately resistant to Verticillium wilt and powdery scab root galling, as well as to tuber infections of late blight. It is also moderately resistant to common strains of potato virus Y (PVYO) but is susceptible to PVYNTN. It is moderately susceptible to pink rot, common scab, powdery scab of the tuber and early blight of the tuber, as well as to Pectobacterium soft rot and Fusarium dry rot. Highland Russet is susceptible to foliar late blight, PLRV infection, Root-knot nematode and corky ringspot but is moderately resistant to PLRV net necrosis. The incidence of hollow heart in Highland Russet is low, similar to that of Ranger Russet and lower than Russet Burbank, Blackspot bruise reaction of Highland Russet is similar to Russet Burbank but it is less susceptible to shatter bruise.

Corky ringspot disease (spraing) is incited by the tobacco rattle virus (TRV) transmitted by stubby root nematode (Paratrichodorus spp.). The resulting damage consists of internal and skin surface necrotic blemishes which render the tubers unmarketable. Resistance to the disease has been extensively documented in breeding programs. High levels of resistance are known for a number of varieties and breeding lines. Because tubers that are symptomless but virus infected have been documented, the nature of resistance is a point of debate. In two field locations where a total of 1,259 tubers of resistant breeding lines were RT-PCR tested, 5.6 and 2.0% of symptomless tubers gave positive PCR tests in the different fields. Nearly all of these were from three clones that would have been classified as susceptible by symptoms in later testing. Taken as a whole 58% of the symptomatic tubers gave positive PCR tests. Standard commercial susceptible cultivars showed 34% symptomless tubers with positive PCR results. We have shown here that tubers of most resistant lines are not positive for the virus when asymptomatic tubers are tested by RT-PCR, while symptomatic tubers are mostly positive. Within selected resistant materials, clones with the highest level of asymptomatic positives also showed susceptible responses as assessed by visual ranking in later tests. Although RT-PCR fails to amplify from symptomatic tubers in some cases, the results of this study suggest that most resistant breeding lines do not test positive as latent carriers of the virus. Therefore, lack of symptoms appears to be an expression of resistance to infection by TRV.

Premier Russet is a russet-skinned, high yielding potato cultivar suitable for processing or fresh-pack. Premier Russet is notable for its resistance to the accumulation of reducing sugars in its tubers. This characteristic allows tubers of Premier Russet to be stored at temperatures as low as 5.6°C for 250 days without the need for reconditioning prior to processing. The low temperature sweetening resistance of Premier Russet allows for its storage at colder temperatures which contributes to prolonged tuber dormancy and quality, and to a reduction in the incidence and severity of storage diseases associated with the higher storage temperatures typically used for industry-standard cultivars such as Russet Burbank and Ranger Russet. Premier Russet was released in 2006 by the USDA-ARS and the Agricultural Experiment Stations of Idaho, Oregon, and Washington, and is a product of the Northwest Potato Variety (Tri-State) Development Program. In full-season trials conducted over a 3-year period in the states of Idaho, Oregon, Washington, Colorado, California, New Mexico, and Texas, Premier Russet averaged 5% and 4% higher yields than Ranger Russet and Russet Burbank, respectively, and had a higher percentage of US No. 1 yield than either cultivar. Specific gravity of Premier Russet is consistently greater than that of Ranger Russet or Russet Burbank. Premier Russet is resistant to common and powdery scab, very resistant to the common strain of potato virus Y (PVYO), and moderately resistant to Verticillium wilt, early blight of the foliage and tuber, Pectobacterium (Erwinia) soft rot, and to galling of roots by powdery scab. Blackspot bruise reaction for Premier Russet is similar to that of Ranger Russet. The incidence of hollow heart in Premier Russet is higher than that of Ranger Russet or Russet Burbank. Cultural recommendations to manage hollow heart in Premier Russet are provided.

The limited population sizes used in many quantitative trait locus (QTL) detection experiments can lead to underestimation of QTL number, overestimation of QTL effects, and failure to quantify QTL interactions. We used the barley/barley stripe rust pathosystem to evaluate the effect of population size on the estimation of QTL parameters. We generated a large (n = 409) population of doubled haploid lines derived from the cross of two inbred lines, BCD47 and Baronesse. This population was evaluated for barley stripe rust severity in the Toluca Valley, Mexico, and in Washington State, USA, under field conditions. BCD47 was the principal donor of resistance QTL alleles, but the susceptible parent also contributed some resistance alleles. The major QTL, located on the long arm of chromosome 4H, close to the Mlo gene, accounted for up to 34% of the phenotypic variance. Subpopulations of different sizes were generated using three methods-resampling, selective genotyping, and selective phenotyping-to evaluate the effect of population size on the estimation of QTL parameters. In all cases, the number of QTL detected increased with population size. QTL with large effects were detected even in small populations, but QTL with small effects were detected only by increasing population size. Selective genotyping and/or selective phenotyping approaches could be effective strategies for reducing the costs associated with conducting QTL analysis in large populations. The method of choice will depend on the relative costs of genotyping versus phenotyping.

With the advent of herbicide-resistant wheat (Triticum aestivum L.), there is a concern with the potential for gene migration between wheat and jointed goatgrass (Aegilops cylindrica Host). This is especially true for genes on the D genome, since this genome is shared by wheat and jointed goatgrass. To study the potential for gene migration, BC 1 and BC 2 plants were produced with jointed goatgrass as the male recurrent parent. To determine if wheat chromatin was retained at expected Mendelian frequencies in these backcrosses, 14 simple sequence repeats (SSR) markers associated with the long and short arms of the D genome chromosomes were used. Chi-square analysis showed that 12 of the 14 markers fit the expected ratio for retention of wheat alleles in the BC 1 generation. In the BC2 generation, 11 of the 14 markers fit the expected frequencies for the retention of wheat alleles. The markers not fitting the expected frequencies in both generations deviated in the direction of more heterozygotes than expected, indicating a higher than expected retention of wheat alleles. Furthermore, recombination between the D genome chromosomes of the two species was observed. On the basis of these results, it appears that it is possible for a gene on the D genome of wheat to move into jointed goatgrass if the BC 1 and BC 2 generations were produced in the field.

The ancestor of barley (Hordeum vulgare subsp. spontaneum) may be a source of novel alleles for crop improvement. We developed a set of recombinant chromosome substitution lines (RCSLs) using an accession of H. vulgare subsp. spontaneum (Caesarea 26-24, from Israel) as the donor and Hordeum vulgare subsp. vulgare 'Harrington' (the North American malting quality standard) as the recurrent parent via two backcrosses to the recurrent parent, followed by six generations of selfing. Here we report (i) the genomic architecture of the RCSLs, as inferred by simple sequence repeat (SSR) markers, and (ii) the effects of H. vulgare subsp. spontaneum genome segment introgressions in terms of three classes of phenotypes: inflorescence yield components, malting quality traits, and domestication traits. Significant differences among the RCSLs were detected for all phenotypes measured. The phenotypic effects of the introgressions were assessed using association analysis, and these were referenced to quantitative trait loci (QTL) reported in the literature. Hordeum vulgare subsp. spontaneum, despite its overall inferior phenotype, contributed some favorable alleles for agronomic and malting quality traits. In most cases, the introgression of the ancestral genome resulted in a loss of desirable phenotypes in the cultivated parent. Although disappointing from a plant breeding perspective, this finding may prove to be a useful tool for gene discovery.Key words: Hordeum vulgare subsp. vulgare, Hordeum vulgare subsp spontaneum, association analysis, QTLs, genetic resources.

Recombinant inbred lines of the International Triticeae Mapping Initiative (ITMI) mapping population were used to localize genetic loci that affect traits related to the free-threshing habit (percent threshability, glume tenacity, and spike fragility) and to spike morphology (spike length, spikelet number, and spike compactness) of wheat ( Triticum aestivum L.). The ITMI population was planted in three environments during 1999 and 2000, and phenotypic and genotypic data were used for composite interval mapping. Two quantitative trait loci (QTL) that consistently affected threshability-associated traits were localized on chromosomes 2D and 5A. Coincident QTL on the short arm of 2D explained 44% of the variation in threshability, 17% of the variation in glume tenacity, and 42% of the variation in rachis fragility. QTL on chromosomes 2D probably represent the effect of Tg, a gene for tenacious glumes. Coincident QTL on the long arm of 5A explained 21% and 10% of the variation in glume tenacity and rachis fragility, respectively. QTL on 5A are believed to represent the effect of Q. Overall, free-threshing-related characteristics were predominantly affected by Tg and to a lesser extent by Q. Other QTL that were significantly associated with threshability-related traits in at least one environment were localized on chromosomes 2A, 2B, 6A, 6D, and 7B. Four QTL on chromosomes 1B, 4A, 6A, and 7A consistently affected spike characteristics. Coincident QTL on the short arm of chromosome 1B explained 18% and 7% of the variation in spike length and spike compactness, respectively. QTL on the long arm of 4A explained 11%, 14%, and 12% of the variation in spike length, spike compactness, and spikelet number, respectively. A QTL on the short arm of 6A explained 27% of the phenotypic variance for spike compactness, while a QTL on the long arm of 7A explained 18% of the variation in spikelet number. QTL on chromosomes 1B and 6A appear to affect spike dimensions by modulating rachis internode length, while QTL on chromosomes 4A and 7A do so by affecting the formation of spikelets. Other QTL that were significantly associated with spike morphology-related traits, in at least one environment, were localized on chromosomes 2B, 3A, 3D, 4D, and 5A.

Sesamia nonagrioides Lefebvre is a major insect pest of maize (Zea mays L.) in northwestern Spain. The inheritance of ear resistance in field corn to this pest has not been studied. This work aims to determine the importance of genetic (additive, dominance, and epistatic effects) and environmental effects in the inheritance of ear resistance to S. nonagrioides. Three field corn inbreds (CM109, EP31, and EP42) were used as parents and two crosses (CM109 × EP31 and CM109 × EP42) were made. These inbreds show different ear resistance levels to S. nonagrioides, with CM109 more resistant than EP31 and EP42. For each cross, parents (P1, P2), F1, F2, and backcrosses to each parent (BC1 and BC2) were evaluated. Correlations among ear damage traits showed that general appearance of the ear should be useful indicator of ear resistance. Ear resistance was dominant to susceptibility and was transmitted from inbreds to their hybrids. The additive-dominance model fit the generation mean analysis for both cross...

In maize (Zea mays L., 2n = 2x = 20), map-based cloning and genome organization studies are often complicated because of the complexity of the genome. Maize chromosome addition lines of hexaploid cultivated oat (Avena sativa L., 2n = 6x = 42), where maize chromosomes can be individually manipulated, represent unique materials for maize genome analysis. Maize chromosome addition lines are particularly suitable for the dissection of a single maize chromosome using radiation because cultivated oat is an allohexaploid in which multiple copies of the oat basic genome provide buffering to chromosomal aberrations and other mutations. Irradiation (gamma rays at 30, 40, and 50 krad) of a monosomic maize chromosome 9 addition line produced maize chromosome 9 radiation hybrids (M9RHs)—oat lines possessing different fragments of maize chromosome 9 including intergenomic translocations and modified maize addition chromosomes with internal and terminal deletions. M9RHs with 1 to 10 radiation-induced breaks per chromosome were identified. We estimated that a panel of 100 informative M9RHs (with an average of 3 breaks per chromosome) would allow mapping at the 0.5- to 1.0-Mb level of resolution. Because mapping with maize chromosome addition lines and radiation hybrid derivatives involves assays for the presence or absence of a given marker, monomorphic markers can be quickly and efficiently mapped to a chromosome region. Radiation hybrid derivatives also represent sources of region-specific DNA for cloning of genes or DNA markers.

Quantitative resistance (QR) to disease is usually more durable than qualitative resistance, but its genetic basis is not well understood. We used the barley/barley stripe rust pathosystem as a model for the characterization of the QR phenotype and associated genomic regions. As an intermediate step in the preparation of near-isogenic lines representing individual QTL alleles and combinations of QTL alleles in a homogeneous genetic background, we developed a set of QTL introgression lines in a susceptible background. These intermediate barley near-isogenic (i-BISON) lines represent disease resistance QTL combined in one-, two-, and three-way combinations in a susceptible background. We measured four components of disease resistance on the i-BISON lines: latent period, infection efficiency, lesion size, and pustule density. The greatest differences between the target QTL introgressions and the susceptible controls were for the latter three traits. On average, however, the QTL introgressions also had longer latent periods than the susceptible parent (Baronesse). There were significant differences in the magnitudes of effects of different QTL alleles. The 4H QTL allele had the largest effect, followed by the alleles on 1H and 5H. Pyramiding multiple QTL alleles led to higher levels of resistance in terms of all components of QR except latent period.

Sesamia nonagrioides Lefebvre is a major insect pest of maize (Zea mays L.) in northwestern Spain. The inheritance of ear resistance in field corn to this pest has not been studied. This work aims to determine the importance of genetic (additive, dominance, and epistatic effects) and environmental effects in the inheritance of ear resistance to S. nonagrioides. Three field corn inbreds (CM109, EP31, and EP42) were used as parents and two crosses (CM109 x EP31 and CM109 x EP42) were made. These inbreds show different ear resistance levels to S. nonagrioides, with CM109 more resistant than EP31 and EP42. For each cross, parents (P1, P2), F1, F2, and backcrosses to each parent (BC1 and BC2) were evaluated. Correlations among ear damage traits showed that general appearance of the ear should be useful indicator of ear resistance. Ear resistance was dominant to susceptibility and was transmitted from inbreds to their hybrids. The additive-dominance model fit the generation mean analysis for both crosses and the degree of genetic control varied depending on the cross and trait. For both crosses, additive and dominance effects were significant for most ear damage traits. Epistatic gene effects were significant for husk and shank damage, and gene effects for number and length of tunnels were not significant. Because ear resistance involved additive and dominance effects for this set of inbreds, breeding procedures based on both types of gene action should be effective.