5 results on '"Miguel Hernandez-Martinez"'
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2. Deciphering the Binding of Salicylic Acid to Arabidopsis thaliana Chloroplastic GAPDH-A1
- Author
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Igor Pokotylo, Denis Hellal, Tahar Bouceba, Miguel Hernandez-Martinez, Volodymyr Kravets, Luis Leitao, Christophe Espinasse, Isabelle Kleiner, and Eric Ruelland
- Subjects
salicylic acid ,glyceraldehyde 3-phosphate dehydrogenase ,molecular dynamics ,molecular docking ,protein ligand interaction ,surface plasmon resonance ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Salicylic acid (SA) has an essential role in the responses of plants to pathogens. SA initiates defence signalling via binding to proteins. NPR1 is a transcriptional co-activator and a key target of SA binding. Many other proteins have recently been shown to bind SA. Amongst these proteins are important enzymes of primary metabolism. This fact could stand behind SA’s ability to control energy fluxes in stressed plants. Nevertheless, only sparse information exists on the role and mechanisms of such binding. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was previously demonstrated to bind SA both in human and plants. Here, we detail that the A1 isomer of chloroplastic glyceraldehyde 3-phosphate dehydrogenase (GAPA1) from Arabidopsis thaliana binds SA with a KD of 16.7 nM, as shown in surface plasmon resonance experiments. Besides, we show that SA inhibits its GAPDH activity in vitro. To gain some insight into the underlying molecular interactions and binding mechanism, we combined in silico molecular docking experiments and molecular dynamics simulations on the free protein and protein–ligand complex. The molecular docking analysis yielded to the identification of two putative binding pockets for SA. A simulation in water of the complex between SA and the protein allowed us to determine that only one pocket—a surface cavity around Asn35—would efficiently bind SA in the presence of solvent. In silico mutagenesis and simulations of the ligand/protein complexes pointed to the importance of Asn35 and Arg81 in the binding of SA to GAPA1. The importance of this is further supported through experimental biochemical assays. Indeed, mutating GAPA1 Asn35 into Gly or Arg81 into Leu strongly diminished the ability of the enzyme to bind SA. The very same cavity is responsible for the NADP+ binding to GAPA1. More precisely, modelling suggests that SA binds to the very site where the pyrimidine group of the cofactor fits. NADH inhibited in a dose-response manner the binding of SA to GAPA1, validating our data.
- Published
- 2020
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3. Deciphering the Binding of Salicylic Acid to Arabidopsis thaliana Chloroplastic GAPDH-A1
- Author
-
Christophe Espinasse, Isabelle Kleiner, Tahar Bouceba, Luis Leitao, Miguel Hernandez-Martinez, Igor Pokotylo, Denis Hellal, V. S. Kravets, Eric Ruelland, Institut d'écologie et des sciences de l'environnement de Paris (iEES Paris ), Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire Interuniversitaire des Systèmes Atmosphériques (LISA (UMR_7583)), Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Marie Curie/Universite Paris-Est Creteil post doc fellowship (Prestige programme), PHC DNIPRO grant, M2 grants from iEES-Paris. OSU Efluve, Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)
- Subjects
0106 biological sciences ,0301 basic medicine ,In silico ,salicylic acid ,Dehydrogenase ,01 natural sciences ,Article ,Catalysis ,Cofactor ,Inorganic Chemistry ,lcsh:Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Glyceraldehyde ,biacore ,Arabidopsis thaliana ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Physical and Theoretical Chemistry ,Molecular Biology ,lcsh:QH301-705.5 ,Spectroscopy ,Glyceraldehyde 3-phosphate dehydrogenase ,chemistry.chemical_classification ,biology ,Organic Chemistry ,General Medicine ,molecular docking ,[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics ,biology.organism_classification ,Ligand (biochemistry) ,molecular dynamics ,Computer Science Applications ,030104 developmental biology ,Enzyme ,Biochemistry ,chemistry ,glyceraldehyde 3-phosphate dehydrogenase ,lcsh:Biology (General) ,lcsh:QD1-999 ,biology.protein ,protein ligand interaction ,surface plasmon resonance ,010606 plant biology & botany - Abstract
Salicylic acid (SA) has an essential role in the responses of plants to pathogens. SA initiates defence signalling via binding to proteins. NPR1 is a transcriptional co-activator and a key target of SA binding. Many other proteins have recently been shown to bind SA. Amongst these proteins are important enzymes of primary metabolism. This fact could stand behind SA&rsquo, s ability to control energy fluxes in stressed plants. Nevertheless, only sparse information exists on the role and mechanisms of such binding. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was previously demonstrated to bind SA both in human and plants. Here, we detail that the A1 isomer of chloroplastic glyceraldehyde 3-phosphate dehydrogenase (GAPA1) from Arabidopsis thaliana binds SA with a KD of 16.7 nM, as shown in surface plasmon resonance experiments. Besides, we show that SA inhibits its GAPDH activity in vitro. To gain some insight into the underlying molecular interactions and binding mechanism, we combined in silico molecular docking experiments and molecular dynamics simulations on the free protein and protein&ndash, ligand complex. The molecular docking analysis yielded to the identification of two putative binding pockets for SA. A simulation in water of the complex between SA and the protein allowed us to determine that only one pocket&mdash, a surface cavity around Asn35&mdash, would efficiently bind SA in the presence of solvent. In silico mutagenesis and simulations of the ligand/protein complexes pointed to the importance of Asn35 and Arg81 in the binding of SA to GAPA1. The importance of this is further supported through experimental biochemical assays. Indeed, mutating GAPA1 Asn35 into Gly or Arg81 into Leu strongly diminished the ability of the enzyme to bind SA. The very same cavity is responsible for the NADP+ binding to GAPA1. More precisely, modelling suggests that SA binds to the very site where the pyrimidine group of the cofactor fits. NADH inhibited in a dose-response manner the binding of SA to GAPA1, validating our data.
- Published
- 2020
4. Correction: Pokotylo, I., et al. Deciphering the Binding of Salicylic Acid to Arabidopsis thaliana Chloroplastic GAPDH-A1. Int. J. Mol. Sci. 2020, 21, 4678
- Author
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Denis Hellal, Tahar Bouceba, Christophe Espinasse, Miguel Hernandez-Martinez, Luis Leitao, Isabelle Kleiner, Eric Ruelland, Igor Pokotylo, and V. S. Kravets
- Subjects
Chloroplasts ,Arabidopsis ,Molecular Dynamics Simulation ,Catalysis ,lcsh:Chemistry ,Inorganic Chemistry ,chemistry.chemical_compound ,Point Mutation ,Arabidopsis thaliana ,Amino Acid Sequence ,Physical and Theoretical Chemistry ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,lcsh:QH301-705.5 ,Molecular Biology ,Spectroscopy ,Glyceraldehyde 3-phosphate dehydrogenase ,Binding Sites ,biology ,Chemistry ,Organic Chemistry ,INT ,Correction ,Glyceraldehyde-3-Phosphate Dehydrogenases ,General Medicine ,NAD ,biology.organism_classification ,Computer Science Applications ,Molecular Docking Simulation ,n/a ,lcsh:Biology (General) ,lcsh:QD1-999 ,Biochemistry ,biology.protein ,Salicylic Acid ,Salicylic acid - Abstract
Salicylic acid (SA) has an essential role in the responses of plants to pathogens. SA initiates defence signalling via binding to proteins. NPR1 is a transcriptional
- Published
- 2020
5. IMPLEMENTACIÓN DE UN PLAN ESTRATÉGICO PARA EL FORTALECIMIENTO DE LA PROMOCIÓN DE LOS RECURSOS TURÍSTICOS EN LA PROVINCIA DE HUARMEY 2016
- Author
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MIGUEL HERNANDEZ MARTINEZ
- Abstract
IMPLEMENTACIÓN DE UN PLAN ESTRATÉGICO PARA EL FORTALECIMIENTO DE LA PROMOCIÓN DE LOS RECURSOS TURÍSTICOS EN LA PROVINCIA DE HUARMEY 2016
- Published
- 2016
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