10 results on '"Qian-Chen Wang"'
Search Results
2. lncRNA expression profiles and associated ceRNA network analyses in epicardial adipose tissue of patients with coronary artery disease
- Author
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Qian-Chen Wang, Zhen-Yu Wang, Qian Xu, Xu-Liang Chen, and Rui-Zheng Shi
- Subjects
Medicine ,Science - Abstract
Abstract Epicardial adipose tissue (EAT) contributes to the pathophysiological process of coronary artery disease (CAD). The expression profiles of long non-coding RNAs (lncRNA) in EAT of patients with CAD have not been well characterized. We conducted high-throughput RNA sequencing to analyze the expression profiles of lncRNA in EAT of patients with CAD compared to patients without CAD. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were executed to investigate the principal functions of the significantly dysregulated mRNAs. We confirmed a dysregulated intergenic lncRNA (lincRNA) (LINC00968) by real-time quantitative PCR (RT-qPCR). Subsequently, we constructed a ceRNA network associated with LINC00968, which included 49 mRNAs. Compared with the control group, lncRNAs and genes of EAT in CAD were characterized as metabolic active and pro-inflammatory profiles. The sequencing analysis detected 2539 known and 1719 novel lncRNAs. Then, we depicted both lncRNA and gene signatures of EAT in CAD, featuring dysregulation of genes involved in metabolism, nuclear receptor transcriptional activity, antigen presentation, chemokine signaling, and inflammation. Finally, we identified a ceRNA network as candidate modulator in EAT and its potential role in CAD. We showed the expression profiles of specific EAT lncRNA and mRNA in CAD, and a selected non-coding associated ceRNA regulatory network, which taken together, may contribute to a better understanding of CAD mechanism and provide potential therapeutic targets. Trial registration Chinese Clinical Trial Registry, No. ChiCTR1900024782.
- Published
- 2021
- Full Text
- View/download PDF
3. Exploring the Role of Epicardial Adipose Tissue in Coronary Artery Disease From the Difference of Gene Expression
- Author
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Qian-Chen Wang, Zhen-Yu Wang, Qian Xu, Ruo-Bing Li, Guo-Gang Zhang, and Rui-Zheng Shi
- Subjects
epicardial adipose tissue ,coronary artery disease ,gene expression profiles ,bioinformatics analysis ,mRNA ,Physiology ,QP1-981 - Abstract
ObjectivesEpicardial adipose tissue (EAT) is closely adjacent to the coronary arteries and myocardium, its role as an endocrine organ to affect the pathophysiological processes of the coronary arteries and myocardium has been increasingly recognized. However, the specific gene expression profiles of EAT in coronary artery disease (CAD) has not been well characterized. Our aim was to investigate the role of EAT in CAD at the gene level.MethodsHere, we compared the histological and gene expression difference of EAT between CAD and non-CAD. We investigated the gene expression profiles in the EAT of patients with CAD through the high-throughput RNA sequencing. We performed bioinformatics analysis such as functional enrichment analysis and protein-protein interaction network construction to obtain and verify the hub differentially expressed genes (DEGs) in the EAT of CAD.ResultsOur results showed that the size of epicardial adipocytes in the CAD group was larger than in the control group. Our findings on the EAT gene expression profiles of CAD showed a total of 747 DEGs (fold change >2, p value
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- 2021
- Full Text
- View/download PDF
4. Endothelial dysfunction in renal arcuate arteries of obese Zucker rats: The roles of nitric oxide, endothelium-derived hyperpolarizing factors, and calcium-activated K+ channels.
- Author
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Dan-dan Yin, Qian-chen Wang, Xun Zhou, and Ying Li
- Subjects
Medicine ,Science - Abstract
The roles of nitric oxide (NO), endothelium-derived hyperpolarizing factors (EDHF), and calcium-activated K+ (KCa) channels in diabetes-associated endothelial dysfunction of small renal arteries are not clear. The present study investigated acetylcholine (ACh)-induced vasorelaxation of renal arcuate arteries from obese Zucker (OZ) rats at different diabetes durations, and the relative contribution of NO, EDHF, and KCa channels to the endothelial dysfunction. OZ rats of 7 weeks (prediabetic stage), 12 weeks (early diabetic stage), and 20 weeks (late diabetic stage), and time-matched lean control rats, were studied. Segments of arcuate arteries (130 to 180 μm) were isolated, cannulated and pressurized. Vascular endothelial functions were tested using ACh-induced vasodilation. Our experiments demonstrated: (1) ACh-elicited vasodilation was impaired in OZ rats of 20 weeks, but not in rats of 7 and 12 weeks; (2) inhibition of NO or EDHF (contributed by epoxyeicosatrienoic acids [EETs]) production significantly decreased ACh-induced vasodilation in both lean and OZ rats of 20 weeks. The reduction of ACh-induced vasodilation by inhibition of NO or EDHF formation was less in OZ rats, as compared to lean rats; and (3) inhibition of KCa channels markedly reduced ACh-induced vasodilation in lean control rats, but not in OZ rats of 20 weeks. Our observations indicated that endothelium-dependent vasodilation in renal arcuate arteries is impaired in diabetes mellitus; NO and EDHF, mainly EETs, dominate the ACh-induced vasodilation in renal arcuate arteries; the contribution of NO and EETs is impaired in diabetic rats; KCa channels are involved in ACh-induced vasodilation; and the activity of KCa channels is downregulated in diabetes mellitus.
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- 2017
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5. flt1 inactivation promotes zebrafish cardiac regeneration by enhancing endothelial activity and limiting the fibrotic response.
- Author
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Zhen-Yu Wang, Mehra, Armaan, Qian-Chen Wang, Gupta, Savita, Silva, Agatha Ribeiro da, Juan, Thomas, Günther, Stefan, Looso, Mario, Detleffsen, Jan, Stainier, Didier Y. R., and Marín-Juez, Rubén
- Abstract
VEGFA administration has been explored as a pro-angiogenic therapy for cardiovascular diseases including heart failure for several years, but with little success. Here, we investigate a different approach to augment VEGFA bioavailability: by deleting the VEGFA decoy receptor VEGFR1 (also known as FLT1), one can achieve more physiological VEGFA concentrations. We find that after cryoinjury, zebrafish flt1 mutant hearts display enhanced coronary revascularization and endocardial expansion, increased cardiomyocyte dedifferentiation and proliferation, and decreased scarring. Suppressing Vegfa signaling in flt1 mutants abrogates these beneficial effects of flt1 deletion. Transcriptomic analyses of cryoinjured flt1 mutant hearts reveal enhanced endothelial MAPK/ERK signaling and downregulation of the transcription factor gene egr3. Using newly generated genetic tools, we observe egr3 upregulation in the regenerating endocardium, and find that Egr3 promotes myofibroblast differentiation. These data indicate that with enhanced Vegfa bioavailability, the endocardium limits myofibroblast differentiation via egr3 downregulation, thereby providing a more permissive microenvironment for cardiomyocyte replenishment after injury. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Mouse Models of Orofacial Clefts: SHH and TGF-β Pathways.
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Yu Chen LI, Le Ran LI, Zi Han GAO, Yi Ran YANG, Qian Chen WANG, Wei Yu ZHANG, Li Qi ZHANG, Tian Song XU, and Feng CHEN
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LABORATORY mice ,CONGENITAL disorders ,TRANSFORMING growth factors ,GENE knockout ,MEDICAL research ,HUMAN abnormalities - Abstract
Birth defects have always been one of the most important diseases in medical research as they affect the quality of the birth population. Orofacial clefts (OFCs) are common birth defects that place a huge burden on families and society. Early screening and prevention of OFCs can promote better natal and prenatal care and help to solve the problem of birth defects. OFCs are the result of genetic and environmental interactions; many genes are involved, but the current research has not clarified the specific pathogenesis. The mouse animal model is commonly used for research into OFCs; common methods of constructing OFC mouse models include transgenic, chemical induction, gene knockout, gene knock-in and conditional gene knockout models. Several main signal pathways are involved in the pathogenesis of OFCs, including the Sonic hedgehog (SHH) and transforming growth factor (TGF)-β pathways. The genes and proteins in each molecular pathway form a complex network to jointly regulate the formation and development of the lip and palate. When one or more genes, proteins or interactions is abnormal, OFCs will form. This paper summarises the mouse models of OFCs formed by different modelling methods, as well as the key pathogenic genes from the SHH and TGF-β pathways, to help to clarify the pathogenesis of OFCs and develop targets for early screening and prevention. [ABSTRACT FROM AUTHOR]
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- 2023
- Full Text
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7. Exploring the Role of Epicardial Adipose Tissue in Coronary Artery Disease From the Difference of Gene Expression
- Author
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Ruizheng Shi, Ruo-Bing Li, Qian Xu, Qian-Chen Wang, Zhen-Yu Wang, and Guogang Zhang
- Subjects
bioinformatics analysis ,lcsh:QP1-981 ,Physiology ,business.industry ,gene expression profiles ,mRNA ,CAD ,CCR8 ,Bioinformatics ,medicine.disease ,epicardial adipose tissue ,CXCR5 ,Fold change ,lcsh:Physiology ,Coronary arteries ,Coronary artery disease ,medicine.anatomical_structure ,Physiology (medical) ,Gene expression ,medicine ,cardiovascular diseases ,business ,Gene ,coronary artery disease ,Original Research - Abstract
ObjectivesEpicardial adipose tissue (EAT) is closely adjacent to the coronary arteries and myocardium, its role as an endocrine organ to affect the pathophysiological processes of the coronary arteries and myocardium has been increasingly recognized. However, the specific gene expression profiles of EAT in coronary artery disease (CAD) has not been well characterized. Our aim was to investigate the role of EAT in CAD at the gene level.MethodsHere, we compared the histological and gene expression difference of EAT between CAD and non-CAD. We investigated the gene expression profiles in the EAT of patients with CAD through the high-throughput RNA sequencing. We performed bioinformatics analysis such as functional enrichment analysis and protein-protein interaction network construction to obtain and verify the hub differentially expressed genes (DEGs) in the EAT of CAD.ResultsOur results showed that the size of epicardial adipocytes in the CAD group was larger than in the control group. Our findings on the EAT gene expression profiles of CAD showed a total of 747 DEGs (fold change >2, p value GNG3, MCHR1, BDKRB1, MCHR2, CXCL8, CXCR5, CCR8, CCL4L1, TAS2R10, and TAS2R41) were identified.ConclusionEpicardial adipose tissue in CAD shows unique gene expression profiles and may act as key regulators in the CAD pathological process.
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- 2021
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8. lncRNA expression profiles and associated ceRNA network analyses in epicardial adipose tissue of patients with coronary artery disease
- Author
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Ruizheng Shi, Xuliang Chen, Qian-Chen Wang, Zhen-Yu Wang, and Qian Xu
- Subjects
Male ,0301 basic medicine ,China ,Chemokine ,Science ,Cardiology ,Gene Expression ,Coronary Artery Disease ,Computational biology ,030204 cardiovascular system & hematology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Humans ,Gene Regulatory Networks ,RNA, Messenger ,KEGG ,Gene ,Aged ,Data Management ,Messenger RNA ,Multidisciplinary ,biology ,Competing endogenous RNA ,Gene Expression Profiling ,Computational Biology ,RNA ,Middle Aged ,MicroRNAs ,Cardiovascular diseases ,Gene Ontology ,030104 developmental biology ,Real-time polymerase chain reaction ,Adipose Tissue ,Nuclear receptor ,biology.protein ,Medicine ,Female ,RNA, Long Noncoding ,Transcriptome ,Cell-Free Nucleic Acids ,Pericardium - Abstract
Epicardial adipose tissue (EAT) contributes to the pathophysiological process of coronary artery disease (CAD). The expression profiles of long non-coding RNAs (lncRNA) in EAT of patients with CAD have not been well characterized. We conducted high-throughput RNA sequencing to analyze the expression profiles of lncRNA in EAT of patients with CAD compared to patients without CAD. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were executed to investigate the principal functions of the significantly dysregulated mRNAs. We confirmed a dysregulated intergenic lncRNA (lincRNA) (LINC00968) by real-time quantitative PCR (RT-qPCR). Subsequently, we constructed a ceRNA network associated with LINC00968, which included 49 mRNAs. Compared with the control group, lncRNAs and genes of EAT in CAD were characterized as metabolic active and pro-inflammatory profiles. The sequencing analysis detected 2539 known and 1719 novel lncRNAs. Then, we depicted both lncRNA and gene signatures of EAT in CAD, featuring dysregulation of genes involved in metabolism, nuclear receptor transcriptional activity, antigen presentation, chemokine signaling, and inflammation. Finally, we identified a ceRNA network as candidate modulator in EAT and its potential role in CAD. We showed the expression profiles of specific EAT lncRNA and mRNA in CAD, and a selected non-coding associated ceRNA regulatory network, which taken together, may contribute to a better understanding of CAD mechanism and provide potential therapeutic targets.Trial registration Chinese Clinical Trial Registry, No. ChiCTR1900024782.
- Published
- 2021
- Full Text
- View/download PDF
9. Continuous focus on COVID‐19 epidemic: Changes in China’s clinical guidance
- Author
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Qian-Chen Wang and Zhen-Yu Wang
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medicine.medical_specialty ,2019-20 coronavirus outbreak ,China ,Coronavirus disease 2019 (COVID-19) ,business.industry ,SARS-CoV-2 ,MEDLINE ,Outbreak ,COVID-19 ,Disease ,General Medicine ,Disease Outbreaks ,Infectious Diseases ,Family medicine ,Pandemic ,Epidemiology ,Perspective ,medicine ,Humans ,business ,Epidemics - Abstract
Backgrounds The epidemic of coronavirus disease 2019 (COVID-19) is spreading across the world. As the first country who suffered from the outbreak, China has been taking strict and effective measures to contain the epidemic and treat the disease under the instruction of updating guidance. Aims To compare the changes and updates in China's clinical guidance for COVID-19. Methods We explored China's experience in dealing with the epidemic by longitudinal comparison of China's clinical guidance for COVID-19. Results As of March 4, there are 7 editions of the guidance. With the increasing understanding of COVID-19, changes have been made in aetiology, epidemiology, pathology, clinical features, diagnostic criteria, clinical classification, and treatment. Conclusions We have made a summary of the changes and updates in China's clinical guidance for COVID-19, which mirrors the deepening understanding of the disease over the course of fighting it, hoping to help clinicians worldwide.
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- 2020
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10. Identification of key genes and pathways affected in epicardial adipose tissue from patients with coronary artery disease by integrated bioinformatics analysis
- Author
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Guogang Zhang, Qian Xu, Ruizheng Shi, Qian-Chen Wang, and Liao Tan
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Subcutaneous adipose tissue ,Bioinformatics ,Cardiology ,lcsh:Medicine ,CAD ,Computational biology ,030204 cardiovascular system & hematology ,Biology ,Gene expression omnibus ,Coronary artery disease ,General Biochemistry, Genetics and Molecular Biology ,Pathogenesis ,03 medical and health sciences ,Bioinformatics analysis ,0302 clinical medicine ,Epicardial adipose tissue ,microRNA ,Internal Medicine ,medicine ,KEGG ,Gene ,030304 developmental biology ,0303 health sciences ,Mechanism (biology) ,Microarray analysis techniques ,General Neuroscience ,lcsh:R ,General Medicine ,medicine.disease ,General Agricultural and Biological Sciences - Abstract
Background Coronary artery disease (CAD) is a common disease with high cost and mortality. Here, we studied the differentially expressed genes (DEGs) between epicardial adipose tissue (EAT) and subcutaneous adipose tissue (SAT) from patients with CAD to explore the possible pathways and mechanisms through which EAT participates in the CAD pathological process. Methods Microarray data for EAT and SAT were obtained from the Gene Expression Omnibus database, including three separate expression datasets: GSE24425, GSE64554 and GSE120774. The DEGs between EAT samples and SAT control samples were screened out using the limma package in the R language. Next, we conducted bioinformatic analysis of gene ontology terms and Kyoto Encyclopedia of Genes and Genomes pathways to discover the enriched gene sets and pathways associated with DEGs. Simultaneously, gene set enrichment analysis was carried out to discover enriched gene functions and pathways from all expression data rather than DEGs. The PPI network was constructed to reveal the possible protein interactions consistent with CAD. Mcode and Cytohubba in Cytoscape revealed the possible key CAD genes. In the next step, the corresponding predicted microRNAs (miRNAs) were analysed using miRNA Data Integration Portal. RT-PCR was used to validate the bioinformatic results. Results The three datasets had a total of 89 DEGs (FC log2 > 1 and P value < 0.05). By comparing EAT and SAT, ten common key genes (HOXA5, HOXB5, HOXC6, HOXC8, HOXB7, COL1A1, CCND1, CCL2, HP and TWIST1) were identified. In enrichment analysis, pro-inflammatory and immunological genes and pathways were up-regulated. This could help elucidate the molecular expression mechanism underlying the involvement of EAT in CAD development. Several miRNAs were predicted to regulate these DEGs. In particular, hsa-miR-196a-5p and hsa-miR-196b-5p may be more reliably associated with CAD. Finally, RT-PCR validated the significant difference of OXA5, HOXC6, HOXC8, HOXB7, COL1A1, CCL2 between EAT and SAT (P value < 0.05). Conclusions Between EAT and SAT in CAD patients, a total of 89 DEGs, and 10 key genes, including HOXA5, HOXB5, HOXC6, HOXC8, HOXB7, COL1A1, CCND1, CCL2, HP and TWIST1, and miRNAs hsa-miR-196a-5p and hsa-miR-196b-5p were predicted to play essential roles in CAD pathogenesis. Pro-inflammatory and immunological pathways could act as key EAT regulators by participating in the CAD pathological process.
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- 2020
- Full Text
- View/download PDF
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