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The EDGE-CALIFA survey provides spatially resolved optical integral field unit (IFU) and CO spectroscopy for 125 galaxies selected from the CALIFA Data Release 3 sample. The Extragalactic Database for Galaxy Evolution (EDGE) presents the spatially resolved products of the survey as pixel tables that reduce the oversampling in the original images and facilitate comparison of pixels from different images. By joining these pixel tables to lower dimensional tables that provide radial profiles, integrated spectra, or global properties, it is possible to investigate the dependence of local conditions on large-scale properties. The database is freely accessible and has been utilized in several publications. We illustrate the use of this database and highlight the effects of CO upper limits on the inferred slopes of the local scaling relations between stellar mass, star formation rate (SFR), and H$_2$ surface densities. We find that the correlation between H$_2$ and SFR surface density is the tightest among the three relations., Comment: 21 pages, accepted for publication in ApJS, see DOIs below for code and data access

We present a $^{12}$CO($J$=2-1) survey of 60 local galaxies using data from the Atacama Large Millimeter/submillimeter Compact Array as part of the Extragalactic Database for Galaxy Evolution: the ACA EDGE survey. These galaxies all have integral field spectroscopy from the CALIFA survey. Compared to other local galaxy surveys, ACA EDGE is designed to mitigate selection effects based on CO brightness and morphological type. Of the 60 galaxies in ACA EDGE, 36 are on the star-formation main sequence, 13 are on the red sequence, and 11 lie in the ``green valley" transition between these sequences. We test how star formation quenching processes affect the star formation rate (SFR) per unit molecular gas mass, SFE$_{\rm mol}=$SFR/$M_{\rm mol}$, and related quantities in galaxies with stellar masses $10\leq$log[$M_\star/$M$_\odot$]$\leq11.5$ covering the full range of morphological types. We observe a systematic decrease of the molecular-to-stellar mass fraction ($R^{\rm mol}_{\star}$) with decreasing level of star formation activity, with green valley galaxies having also lower SFE$_{\rm mol}$ than galaxies on the main sequence. On average, we find that the spatially resolved SFE$_{\rm mol}$ within the bulge region of green valley galaxies is lower than in the bulges of main sequence galaxies if we adopt a constant CO-to-H$_2$ conversion factor, $\alpha_{\rm CO}$. While efficiencies in main sequence galaxies remain almost constant with galactocentric radius, in green valley galaxies we note a systematic increase of SFE$_{\rm mol}$, $R^{\rm mol}_{\star}$, and specific star formation rate, sSFR, with increasing radius. Our results suggest that although gas depletion (or removal) seems to be the most important driver of the star-formation quenching in galaxies transiting through the green valley, a reduction in star formation efficiency is also required during this stage.

The astronomical community is grappling with the increasing volume and complexity of data produced by modern telescopes, due to difficulties in reducing, accessing, analyzing, and combining archives of data. To address this challenge, we propose the establishment of a coordinating body, an "entity," with the specific mission of enhancing the interoperability, archiving, distribution, and production of both astronomical data and software. This report is the culmination of a workshop held in February 2023 on the Future of Astronomical Data Infrastructure. Attended by 70 scientists and software professionals from ground-based and space-based missions and archives spanning the entire spectrum of astronomical research, the group deliberated on the prevailing state of software and data infrastructure in astronomy, identified pressing issues, and explored potential solutions. In this report, we describe the ecosystem of astronomical data, its existing flaws, and the many gaps, duplication, inconsistencies, barriers to access, drags on productivity, missed opportunities, and risks to the long-term integrity of essential data sets. We also highlight the successes and failures in a set of deep dives into several different illustrative components of the ecosystem, included as an appendix., Comment: 59 pages; please send comments and/or questions to foadi@googlegroups.com

Modern interferometers routinely provide radio-astronomical images down to subarcsecond resolution. However, interferometers filter out spatial scales larger than those sampled by the shortest baselines, which affects the measurement of both spatial and spectral features. Complementary single-dish data are vital for recovering the true flux distribution of spatially resolved astronomical sources with such extended emission. In this work, we provide an overview of the prominent available methods to combine single-dish and interferometric observations. We test each of these methods in the framework of the CASA data analysis software package on both synthetic continuum and observed spectral data sets. We develop a set of new assessment tools that are generally applicable to all radio-astronomical cases of data combination. Applying these new assessment diagnostics, we evaluate the methods' performance and demonstrate the significant improvement of the combined results in comparison to purely interferometric reductions. We provide combination and assessment scripts as add-on material. Our results highlight the advantage of using data combination to ensure high-quality science images of spatially resolved objects., Comment: 29 pages, 20 figures. Accepted for publication in PASP. Code repository available at: github.com/teuben/DataComb

Shocks and torques produced by non-axisymmetric structures such as spiral arms and bars may transport gas to galaxy central regions. We test this hypothesis by studying the dependence of concentration of CO luminosity ($C_{CO}$), molecular gas ($C_{mol}$), and star formation rate ($C_{SFR}$) in central $\sim$ 2 kpc on the $strength$ of non-axisymmetric disk structure using a sample of 57 disk galaxies selected from the EDGE-CALIFA survey. $C_{mol}$ is calculated using a CO-to-H$_2$ conversion factor that decreases with higher metallicity and higher stellar surface density. We find that $C_{mol}$ is systematically 0.22 dex lower than $C_{CO}$. We confirm that high $C_{mol}$ and strong non-axisymmetric disk structure are more common in barred galaxies than in unbarred galaxies. However, we find that spiral arms also increase $C_{mol}$. We show that there is a good correlation between $C_{mol}$ and the $strength$ of non-axisymmetric structure (which can be due to a bar, spiral arms, or both). This suggests that the stronger the bars and spirals, the more efficient the galaxy is at transporting cold gas to its center. Despite the small subsample size, $C_{mol}$ of the four Seyferts are not significantly reduced compared to inactive galaxies of similar disk structure, implying that the AGN feedback in Seyferts may not notably affect the molecular gas distribution in the central $\sim$2kpc. We find that $C_{SFR}$ tightly correlates with $C_{mol}$ in both unbarred and barred galaxies. Likewise, elevated $C_{SFR}$ is found in galaxies with strong disk structure. Our results suggest that the disk structure, either spirals or bars, can transport gas to the central regions, with higher inflow rates corresponding to stronger structure, and consequently boost central star formation. Both spirals and bars play, therefore, an essential role in the secular evolution of disk galaxies., Comment: 24 pages; accepted for publication in Astronomy & Astrophysics; typos corrected

The center of the nearby galaxy NGC\,253 hosts a population of more than a dozen super star clusters (SSCs) which are still in the process of forming. The majority of the star formation of the burst is concentrated in these SSCs, and the starburst is powering a multiphase outflow from the galaxy. In this work, we measure the 350~GHz dust continuum emission towards the center of NGC\,253 at 47~milliarcsecond (0.8 pc) resolution using data from the Atacama Large Millimeter/submillimeter Array (ALMA). We report the detection of 350~GHz (dust) continuum emission in the outflow for the first time, associated with the prominent South-West streamer. In this feature, the dust emission has a width of $\approx$~8~pc, is located at the outer edge of the CO emission, and corresponds to a molecular gas mass of $\sim~(8-17)\times10^6$~M$_\odot$. In the starburst nucleus, we measure the resolved radial profiles, sizes, and molecular gas masses of the SSCs. Compared to previous work at somewhat lower spatial resolution, the SSCs here break apart into smaller substructures with radii $0.4-0.7$~pc. In projection, the SSCs, dust, and dense molecular gas appear to be arranged as a thin, almost linear, structure roughly 155~pc in length. The morphology and kinematics of this structure can be well explained as gas following $x_2$ orbits at the center of a barred potential. We constrain the morpho-kinematic arrangement of the SSCs themselves, finding that an elliptical, angular momentum-conserving ring is a good description of the both morphology and kinematics of the SSCs., Comment: 26 pages, 13 figures, accepted for publication in ApJ

Observations of 12CO J=1-0 and HCN J=1-0 emission from NGC 5194 (M51) made with the 50~meter Large Millimeter Telescope and the SEQUOIA focal plane array are presented. Using the HCN to CO ratio, we examine the dense gas mass fraction over a range of environmental conditions within the galaxy. Within the disk, the dense gas mass fraction varies along spiral arms but the average value over all spiral arms is comparable to the mean value of interarm regions. We suggest that the near constant dense gas mass fraction throughout the disk arises from a population of density stratified, self gravitating molecular clouds and the required density threshold to detect each spectral line. The measured dense gas fraction significantly increases in the central bulge in response to the effective pressure, P_e, from the weight from the stellar and gas components. This pressure modifies the dynamical state of the molecular cloud population and possibly, the HCN emitting regions, in the central bulge from self-gravitating to diffuse configurations in which P_e is greater than the gravitational energy density of individual clouds. Diffuse molecular clouds comprise a significant fraction of the molecular gas mass in the central bulge, which may account for the measured sublinear relationships between the surface densities of the star formation rate and molecular and dense gas., Comment: 18 pages, 8 figures, 5 tables. Accepted for publication in ApJ

The last decade has brought about a profound transformation in multimessenger science. Ten years ago, facilities had been built or were under construction that would eventually discover the nature of objects in our universe could be detected through multiple messengers. Nonetheless, multimessenger science was hardly more than a dream. The rewards for our foresight were finally realized through IceCube's discovery of the diffuse astrophysical neutrino flux, the first observation of gravitational waves by LIGO, and the first joint detections in gravitational waves and photons and in neutrinos and photons. Today we live in the dawn of the multimessenger era. The successes of the multimessenger campaigns of the last decade have pushed multimessenger science to the forefront of priority science areas in both the particle physics and the astrophysics communities. Multimessenger science provides new methods of testing fundamental theories about the nature of matter and energy, particularly in conditions that are not reproducible on Earth. This white paper will present the science and facilities that will provide opportunities for the particle physics community renew its commitment and maintain its leadership in multimessenger science., Comment: 174 pages, 12 figures. Contribution to Snowmass 2021. Solicited white paper from CF07. Comments and endorsers welcome. Still accepting contributions (contact editors)

Gamma-rays, the most energetic photons, carry information from the far reaches of extragalactic space with minimal interaction or loss of information. They bring messages about particle acceleration in environments so extreme they cannot be reproduced on earth for a closer look. Gamma-ray astrophysics is so complementary with collider work that particle physicists and astroparticle physicists are often one in the same. Gamma-ray instruments, especially the Fermi Gamma-ray Space Telescope, have been pivotal in major multi-messenger discoveries over the past decade. There is presently a great deal of interest and scientific expertise available to push forward new technologies, to plan and build space- and ground-based gamma-ray facilities, and to build multi-messenger networks with gamma rays at their core. It is therefore concerning that before the community comes together for planning exercises again, much of that infrastructure could be lost to a lack of long-term planning for support of gamma-ray astrophysics. Gamma-rays with energies from the MeV to the EeV band are therefore central to multiwavelength and multi-messenger studies to everything from astroparticle physics with compact objects, to dark matter studies with diffuse large scale structure. These goals and new discoveries have generated a wave of new gamma-ray facility proposals and programs. This paper highlights new and proposed gamma-ray technologies and facilities that have each been designed to address specific needs in the measurement of extreme astrophysical sources that probe some of the most pressing questions in fundamental physics for the next decade. The proposed instrumentation would also address the priorities laid out in the recent Astro2020 Decadal Survey, a complementary study by the astrophysics community that provides opportunities also relevant to Snowmass., Comment: Contribution to Snowmass 2021

Rotation curves of galaxies probe their total mass distributions, including dark matter. Dwarf galaxies are excellent systems to investigate the dark matter density distribution, as they tend to have larger fractions of dark matter compared to higher mass systems. The core-cusp problem describes the discrepancy found in the slope of the dark matter density profile in the centres of galaxies ($\beta^*$) between observations of dwarf galaxies (shallower cores) and dark matter-only simulations (steeper cusps). We investigate $\beta^*$ in six nearby spiral dwarf galaxies for which high-resolution CO $J=1-0$ data were obtained with ALMA. We derive rotation curves and decompose the mass profile of the dark matter using our CO rotation curves as a tracer of the total potential and 4.5$\mu$m photometry to define the stellar mass distribution. We find $\langle\beta^*\rangle = 0.6$ with a standard deviation of $\pm0.1$ among the galaxies in this sample, in agreement with previous measurements in this mass range. The galaxies studied are on the high stellar mass end of dwarf galaxies and have cuspier profiles than lower mass dwarfs, in agreement with other observations. When the same definition of the slope is used, we observe steeper slopes than predicted by the FIRE and NIHAO simulations. This may signal that these relatively massive dwarfs underwent stronger gas inflows toward their centres than predicted by these simulations, that these simulations over-predict the frequency of accretion or feedback events, or that a combination of these or other effects are at work., Comment: Accepted for publication in MNRAS, 21 pages (4 pages of appendix material), 11 figures (3 appendix figures), code and data products available here: https://github.com/rclevy/RotationCurveTiltedRings

This BoF is a continuation of the ADASS FADS tradition of yore, which aims tostimulate discussion (or at least awareness) about the non-technical aspects of our trade.This year, as we expected, it proved to be difficult to have a real discussion by means of Zoom. But the Metis polls and the DisCord log show that we have nevertheless beensuccesful in getting people to (begin to) think about the wayUsers, Developers andManagers work together, inside and between our MultiVerse of Bubbles. Next year wewill try to focus this discussion by means of a Proxy demonstrator. We feel that there isa world to be won., Comment: 4 pages, 3 figures, to appear in the proceedings of Astronomical Data Analysis Software and Systems XXX published by ASP

Scientific software registries and repositories serve various roles in their respective disciplines. These resources improve software discoverability and research transparency, provide information for software citations, and foster preservation of computational methods that might otherwise be lost over time, thereby supporting research reproducibility and replicability. However, developing these resources takes effort, and few guidelines are available to help prospective creators of registries and repositories. To address this need, we present a set of nine best practices that can help managers define the scope, practices, and rules that govern individual registries and repositories. These best practices were distilled from the experiences of the creators of existing resources, convened by a Task Force of the FORCE11 Software Citation Implementation Working Group during the years 2019-2020. We believe that putting in place specific policies such as those presented here will help scientific software registries and repositories better serve their users and their disciplines., Comment: 18 pages

Software is the most used instrument in astronomy, and organizations such as NASA and the Heidelberg Institute for Theoretical Physics (HITS) fund, develop, and release research software. NASA, for example, has created sites such as code.nasa.gov to share its software with the world, but how easy is it to see what NASA has? Until recently, searching NASA's Astrophysics Data System (ADS) for NASA astronomy research software has not been fruitful. Through its ADAP program, NASA funded the Astrophysics Source Code Library to improve the discoverability of these codes. Adding institutional tags to ASCL entries makes it easy to find this software not only in the ASCL but also in ADS and other services that index the ASCL. This presentation covered the changes the ASCL made as a result of this funding and how you can use the results of this work to better find organizational software in ASCL and ADS., Comment: 4 pages; to be published in the proceedings of the ADASS XXX meeting

We present an empirical relation between the cold gas surface density ($\Sigma_{\rm gas}$) and the optical extinction (${\rm A_V}$) in a sample of 103 galaxies from the Extragalactic Database for Galaxy Evolution (EDGE) survey. This survey provides CARMA interferometric CO observations for 126 galaxies included in the Calar Alto Legacy Integral Field Area (CALIFA) survey. The matched, spatially resolved nature of these data sets allows us to derive the $\Sigma_{\rm gas}$-${\rm A_V}$ relation on global, radial, and kpc (spaxel) scales. We determine ${\rm A_V}$ from the Balmer decrement (H$\alpha$/H$\beta$). We find that the best fit for this relation is $\Sigma_{\rm gas} ({\rm M_\odot pc^{-2}})\sim~26~\times~ {\rm A_V}({\rm mag})$, and that it does not depend on the spatial scale used for the fit. However, the scatter in the fits increases as we probe smaller spatial scales, reflecting the complex relative spatial distributions of stars, gas, and dust. We investigate the $\Sigma_{\rm gas}$/ ${\rm A_V}$ ratio on radial and spaxel scales as a function of ${\rm EW(H\alpha)}$. We find that at larger values of ${\rm EW(H\alpha)}$ (i.e., actively star-forming regions) this ratio tend to converge to the value expected for dust-star mixed geometries ($\sim$ 30 $\mathrm{M_{\odot} \,pc^{-2}\,mag^{-1}}$). On radial scales, we do not find a significant relation between the $\Sigma_{\rm gas}$/${\rm A_V}$ ratio and the ionized gas metallicity. We contrast our estimates of $\Sigma_{\rm gas}$ using ${\rm A_V}$ with compilations in the literature of the gas fraction on global and radial scales as well as with well known scaling relations such as the radial star-formation law and the $\Sigma_{\rm gas}$-$\Sigma_*$ relation. These tests show that optical extinction is a reliable proxy for estimating $\Sigma_{\rm gas}$ in the absence of direct sub/millimeter observations of the cold gas., Comment: 12 pages, 10 figures. Submitted to MNRAS

About 60 ADASS participants discussed the evolving roles of users, developers, and managers of astronomical data reduction software. Special emphasis was placed on the role of the user in the era of Big Data. Is it really inevitable that the increasingly ignorant user will just have to be satisfied with the standard products from data processing centres?, Comment: Submitted to the Astronomical Data Analysis Software & Systems Conference (ADASS) XXIX, 2019

Software is a critical part of modern research, and yet there are insufficient mechanisms in the scholarly ecosystem to acknowledge, cite, and measure the impact of research software. The majority of academic fields rely on a one-dimensional credit model whereby academic articles (and their associated citations) are the dominant factor in the success of a researcher's career. In the petabyte era of astronomical science, citing software and measuring its impact enables academia to retain and reward researchers that make significant software contributions. These highly skilled researchers must be retained to maximize the scientific return from petabyte-scale datasets. Evolving beyond the one-dimensional credit model requires overcoming several key challenges, including the current scholarly ecosystem and scientific culture issues. This white paper will present these challenges and suggest practical solutions for elevating the role of software as a product of the research enterprise., Comment: arXiv admin note: substantial text overlap with arXiv:1905.05116

We investigate the prevalence, properties, and kinematics of extraplanar diffuse ionized gas (eDIG) in a sample of 25 edge-on galaxies selected from the CALIFA survey. We measure ionized gas scale heights from ${\rm H\alpha}$ and find that 90% have measurable scale heights with a median of $0.8^{+0.7}_{-0.4}$ kpc. From the ${\rm H\alpha}$ kinematics, we find that 60% of galaxies show a decrease in the rotation velocity as a function of height above the midplane. This lag is characteristic of eDIG, and we measure a median lag of 21 km s$^{-1}$ kpc$^{-1}$ which is comparable to lags measured in the literature. We also investigate variations in the lag with radius. $\rm H{\small I}$ lags have been reported to systematically decrease with galactocentric radius. We find both increasing and decreasing ionized gas lags with radius, as well as a large number of galaxies consistent with no radial lag variation, and investigate these results in the context of internal and external origins for the lagging ionized gas. We confirm that the ${\rm [S{\small II}]}$/${\rm H\alpha}$ and ${\rm [N{\small II}]}$/${\rm H\alpha}$ line ratios increase with height above the midplane as is characteristic of eDIG. The ionization of the eDIG is dominated by star-forming complexes (leaky ${\rm H{\small II}}$ regions). We conclude that the lagging ionized gas is turbulent ejected gas likely resulting from star formation activity in the disk as opposed to gas in the stellar thick disk or bulge. This is further evidence for the eDIG being a product of stellar feedback and for the pervasiveness of this WIM-like phase in many local star-forming galaxies., Comment: 36 pages (including 13 appendix pages), 17 figures, resubmitted to ApJ after one round of refereeing

We use NH3 inversion transitions to trace the dense gas in the NGC 1333 region of the Perseus molecular cloud. NH3(1,1) and NH3(2,2) maps covering an area of 102 square arcminutes at an angular resolution of ~3.7" are produced by combining VLA interferometric observations with GBT single dish maps. The combined maps have a spectral resolution of 0.14 km/s and a sensitivity of 4 mJy/beam. We produce integrated intensity maps, peak intensity maps and dispersion maps of NH3(1,1) and NH3(2,2) and a line-of-sight velocity map of NH3(1,1). These are used to derive the optical depth for the NH3(1,1) main component, the excitation temperature of NH3(1,1), and the rotational temperature, kinetic temperature and column density of NH3 over the mapped area. We compare these observations with the CARMA J=1-0 observations of N2H+ and H13CO+ and conclude that they all trace the same material in these dense star forming regions. From the NH3(1,1) velocity map, we find that a velocity gradient ridge extends in an arc across the entire southern part of NGC 1333. We propose that a large scale turbulent cell is colliding with the cloud, which could result in the formation of a layer of compressed gas. This region along the velocity gradient ridge is dotted with Class 0/I YSOs, that could have formed from local overdensities in the compressed gas leading to gravitational instabilities. The NH3(1,1) velocity dispersion map also has relatively high values along this region, thereby substantiating the shock layer argument.

We present a new package for joint deconvolution of ALMA 12m, 7m, and Total Power (TP) data, dubbed ``Total Power Map to Visibilities (TP2VIS)". It converts a TP (single-dish) map into visibilities on the CASA platform, which can be input into deconvolvers (e.g., CLEAN) along with 12m and 7m visibilities. A manual is presented in the Github repository (https://github.com/tp2vis/distribute). Combining data from the different ALMA arrays is a driver for a number of science topics, namely those that probe size scales of extended and compact structures simultaneously. We test TP2VIS using model images, one with a single Gaussian and another that mimics the internal structures of giant molecular clouds. The result shows that the better uv coverage with TP2VIS visibilities helps the deconvolution process and reproduces the model image within errors of only 5% over two orders of magnitude in flux., Comment: Accepted to PASP. Software distribution: https://github.com/tp2vis/distribute

Astrophysics papers often rely on software which may or may not be available, and URLs are often used as proxy citations for software and data. We extracted all URLs from two journals' 2015 research articles, removed those from certain long-term reliable domains, and tested the remainder to determine what percentage of these URLs were accessible in October 2018., Comment: 4 pages, 2 tables; revised

We present a comparative study of molecular and ionized gas kinematics in nearby galaxies. These results are based on observations from the EDGE survey, which measured spatially resolved $^{12}$CO(J=1-0) in 126 nearby galaxies. Every galaxy in EDGE has corresponding resolved ionized gas measurements from CALIFA. Using a sub-sample of 17 rotation dominated, star-forming galaxies where precise molecular gas rotation curves could be extracted, we derive CO and H$\alpha$ rotation curves using the same geometric parameters out to $\gtrsim$1 $R_e$. We find that $\sim$75% of our sample galaxies have smaller ionized gas rotation velocities than the molecular gas in the outer part of the rotation curve. In no case is the molecular gas rotation velocity measurably lower than that of the ionized gas. We suggest that the lower ionized gas rotation velocity can be attributed to a significant contribution from extraplanar diffuse ionized gas in a thick, turbulence supported disk. Using observations of the H$\gamma$ transition also available from CALIFA, we measure ionized gas velocity dispersions and find that these galaxies have sufficiently large velocity dispersions to support a thick ionized gas disk. Kinematic simulations show that a thick disk with a vertical rotation velocity gradient can reproduce the observed differences between the CO and H$\alpha$ rotation velocities. Observed line ratios tracing diffuse ionized gas are elevated compared to typical values in the midplane of the Milky Way. In galaxies affected by this phenomenon, dynamical masses measured using ionized gas rotation curves will be systematically underestimated., Comment: 37 pages, 18 figures, accepted for publication in ApJ

We present the first results from a new, high resolution, $^{12}$CO(1-0), $^{13}$CO(1-0), and C$^{18}$O(1-0) molecular line survey of the Orion A cloud, hereafter referred to as the CARMA-NRO Orion Survey. CARMA observations have been combined with single-dish data from the Nobeyama 45m telescope to provide extended images at about 0.01 pc resolution, with a dynamic range of approximately 1200 in spatial scale. Here we describe the practical details of the data combination in uv space, including flux scale matching, the conversion of single dish data to visibilities, and joint deconvolution of single dish and interferometric data. A $\Delta$-variance analysis indicates that no artifacts are caused by combining data from the two instruments. Initial analysis of the data cubes, including moment maps, average spectra, channel maps, position-velocity diagrams, excitation temperature, column density, and line ratio maps provides evidence of complex and interesting structures such as filaments, bipolar outflows, shells, bubbles, and photo-eroded pillars. The implications for star formation processes are profound and follow-up scientific studies by the CARMA-NRO Orion team are now underway. We plan to make all the data products described here generally accessible; some are already available at https://dataverse.harvard.edu/dataverse/CARMA-NRO-Orion, Comment: 46 pages, 28 figures, 2 tables, accepted by ApJS

We are members of the Astrophysics Source Code Library's Advisory Committee and its editor-in-chief. The Astrophysics Source Code Library (ASCL, ascl.net) is a successful initiative that advocates for open research software and provides an infrastructure for registering, discovering, sharing, and citing this software. Started in 1999, the ASCL has been expanding in recent years, with an average of over 200 codes added each year, and now houses over 1,600 code entries., Comment: White paper submitted to the National Academies of Sciences, Engineering, and Medicine's Best Practices for a Future Open Code Policy for NASA Space Science Project Committee

We present H13CO+ (J=1-0) and HNC (J=1-0) maps of regions in Serpens South, Serpens Main and NGC 1333 containing filaments. We also observe the Serpens regions using H13CN (J=1-0). These dense gas tracer molecular line observations carried out with CARMA have an angular resolution of ~7", a spectral resolution of ~0.16 km/s and a sensitivity of 50-100 mJy/beam. Although the large scale structure compares well with the Herschel dust continuum maps, we resolve finer structure within the filaments identified by Herschel. The H13CO+ emission distribution agrees with the existing CARMA N2H+ (J=1-0) maps; so they trace the same morphology and kinematics of the filaments. The H13CO+ maps additionally reveal that many regions have multiple structures partially overlapping in the line-of-sight. In two regions, the velocity differences are as high as 1.4 m/s. We identify 8 filamentary structures having typical widths of 0.03-0.08 pc in these tracers. At least 50% of the filamentary structures have distinct velocity gradients perpendicular to their major axis with average values in the range 4-10 km/s/pc. These findings are in support of the theoretical models of filament formation by 2-D inflow in the shock layer created by colliding turbulent cells. We also find evidence of velocity gradients along the length of two filamentary structures; the gradients suggest that these filaments are inflowing towards the cloud core., Comment: 30 pages, 16 figures

We examined software usage in a sample set of astrophysics research articles published in 2015 and searched for source code for the software mentioned in these research papers. We categorized the software to indicate whether source code is available for download and whether there are restrictions to accessing it, and if source code is not available, whether some other form of the software, such as a binary, is. We also extracted hyperlinks from one journal's 2015 research articles, as links in articles can serve as an acknowledgment of software use and lead to data used in the research, and tested them to determine which of these URLs are still accessible. For our sample of 715 software instances in the 166 articles we examined, we were able to categorize 418 records as to availability of source code and found that 285 unique codes were used, 58% of which offer source code available online for download. Of the 2,558 hyperlinks extracted from 1,669 research articles, at best, 90% of them were available over our testing period., Comment: Accepted to ApJS

The Astrophysics Source Code Library (ASCL, ascl.net), established in 1999, is a citable online registry of source codes used in research that are available for download; the ASCL's main purpose is to improve the transparency, reproducibility, and falsifiability of research. In 2017, improvements to the resource included real-time data backup for submissions and newly-published entries, improved cross-matching of research papers with software entries in ADS, and expansion of preferred citation information for the software in the ASCL., Comment: 4 pages; to be published in proceedings of the October 22-26 2017 ADASS XXVII meeting in Santiago, Chile

Broad efforts are underway to capture metadata about research software and retain it across services; notable in this regard is the CodeMeta project. What metadata are important to have about (research) software? What metadata are useful for searching for codes? What would you like to learn about astronomy software? This BoF sought to gather information on metadata most desired by researchers and users of astro software and others interested in registering, indexing, capturing, and doing research on this software. Information from this BoF could conceivably result in changes to the Astrophysics Source Code Library (ASCL) or other resources for the benefit of the community or provide input into other projects concerned with software metadata., Comment: 4 pages; to be published in ADASS XXVII (held Oct 22-26, 2017 in Santiago, Chile) proceedings

We present interferometric CO observations made with the Combined Array for Millimeter-wave Astronomy (CARMA) of galaxies from the Extragalactic Database for Galaxy Evolution survey (EDGE). These galaxies are selected from the Calar Alto Legacy Integral Field Area (CALIFA) sample, mapped with optical integral field spectroscopy. EDGE provides good quality CO data (3$\sigma$ sensitivity $\Sigma_{\rm mol}$ $\sim$ 11 M$_\odot$ pc$^{-2}$ before inclination correction, resolution $\sim1.4$ kpc) for 126 galaxies, constituting the largest interferometric CO survey of galaxies in the nearby universe. We describe the survey, the data characteristics, the data products, and present initial science results. We find that the exponential scale-lengths of the molecular, stellar, and star-forming disks are approximately equal, and galaxies that are more compact in molecular gas than in stars tend to show signs of interaction. We characterize the molecular to stellar ratio as a function of Hubble type and stellar mass, present preliminary results on the resolved relations between the molecular gas, stars, and star formation rate, and discuss the dependence of the resolved molecular depletion time on stellar surface density, nebular extinction, and gas metallicity. EDGE provides a key dataset to address outstanding topics regarding gas and its role in star formation and galaxy evolution, which will be publicly available on completion of the quality assessment., Comment: Accepted by ApJ, 50 pp including figures

Improving software citation and credit continues to be a topic of interest across and within many disciplines, with numerous efforts underway. In this Birds of a Feather (BoF) session, we started with a list of actionable ideas from last year's BoF and other similar efforts and worked alone or in small groups to begin implementing them. Work was captured in a common Google document; the session organizers will disseminate or otherwise put this information to use in or for the community in collaboration with those who contributed., Comment: 4 pages; to be published in ADASS XXVI (held Oct 16-20, 2016) proceedings

The Astrophysics Source Code Library (ASCL) is a free online registry of research codes; it is indexed by ADS and Web of Science and has over 1300 code entries. Its entries are increasingly used to cite software; citations have been doubling each year since 2012 and every major astronomy journal accepts citations to the ASCL. Codes in the resource cover all aspects of astrophysics research and many programming languages are represented. In the past year, the ASCL added dashboards for users and administrators, started minting Digital Objective Identifiers (DOIs) for software it houses, and added metadata fields requested by users. This presentation covers the ASCL's growth in the past year and the opportunities afforded it as one of the few domain libraries for science research codes., Comment: 4 pages, 2 figures; to be published in ADASS XXVI (held October 16-20, 2016) proceedings

We present a 3 mm spectral line and continuum survey of L1451 in the Perseus Molecular Cloud. These observations are from the CARMA Large Area Star Formation Survey (CLASSy), which also imaged Barnard 1, NGC 1333, Serpens Main and Serpens South. L1451 is the survey region with the lowest level of star formation activity---it contains no confirmed protostars. HCO+, HCN, and N2H+ (J=1-0) are all detected throughout the region, with HCO+ the most spatially widespread, and molecular emission seen toward 90% of the area above N(H_2) column densities of 1.9x10^21 cm^-2. HCO+ has the broadest velocity dispersion, near 0.3 km/s on average, compared to ~0.15 km/s for the other molecules, thus representing a range from supersonic to subsonic gas motions. Our non-binary dendrogram analysis reveals that the dense gas traced by each molecule has similar hierarchical structure, and that gas surrounding the candidate first hydrostatic core (FHSC), L1451-mm, and other previously detected single-dish continuum clumps have similar hierarchical structure; this suggests that different sub-regions of L1451 are fragmenting on the pathway to forming young stars. We determined the three-dimensional morphology of the largest detectable dense gas structures to be relatively ellipsoidal compared to other CLASSy regions, which appeared more flattened at largest scales. A virial analysis shows the most centrally condensed dust structures are likely unstable against collapse. Additionally, we identify a new spherical, centrally condensed N2H+ feature that could be a new FHSC candidate. The overall results suggest L1451 is a young region starting to form its generation of stars within turbulent, hierarchical structures., Comment: Accepted to The Astrophysical Journal (ApJ), 45 pages, 24 figures (some with reduced resolution in this preprint); Project website is at http://carma.astro.umd.edu/classy

The past year has seen movement on several fronts for improving software citation, including the Center for Open Science's Transparency and Openness Promotion (TOP) Guidelines, the Software Publishing Special Interest Group that was started at January's AAS meeting in Seattle at the request of that organization's Working Group on Astronomical Software, a Sloan-sponsored meeting at GitHub in San Francisco to begin work on a cohesive research software citation-enabling platform, the work of Force11 to "transform and improve" research communication, and WSSSPE's ongoing efforts that include software publication, citation, credit, and sustainability. Brief reports on these efforts were shared at the BoF, after which participants discussed ideas for improving software citation, generating a list of recommendations to the community of software authors, journal publishers, ADS, and research authors. The discussion, recommendations, and feedback will help form recommendations for software citation to those publishers represented in the Software Publishing Special Interest Group and the broader community., Comment: Birds of a Feather session organized by the Astrophysics Source Code Library (ASCL, http://ascl.net/ ); to be published in Proceedings of ADASS XXV (Sydney, Australia; October, 2015). 4 pages

We describe a framework that allows a scientist-user to easily query for information across all Virtual Observatory (VO) repositories and pull it back for analysis. This framework hides the gory details of meta-data remediation and data formatting from the user, allowing them to get on with search, retrieval and analysis of VO data as if they were drawn from a single source using a science based terminology rather than a data-centric one., Comment: ADASS XVI ASP Conference Series, Vol. 376, proceedings of the conference held 15-18 October 2006 in Tucson, Arizona, USA. Edited by Richard A. Shaw, Frank Hill and David J. Bell., p.563

The Astrophysics Source Code Library (ASCL; ascl.net) is a free online registry of codes used in astronomy research; it currently contains over 900 codes and is indexed by ADS. The ASCL has recently moved a new infrastructure into production. The new site provides a true database for the code entries and integrates the WordPress news and information pages and the discussion forum into one site. Previous capabilities are retained and permalinks to ascl.net continue to work. This improvement offers more functionality and flexibility than the previous site, is easier to maintain, and offers new possibilities for collaboration. This presentation covers these recent changes to the ASCL., Comment: 4 pages; to be published in ADASS XXIV Proceedings. ASCL can be accessed at http://ascl.net/

Phase fluctuations introduced by the atmosphere are the main limiting factor in attaining diffraction limited performance in extended interferometric arrays at millimeter and submillimeter wavelengths. We report the results of C-PACS, the Combined Array for Research in Millimeter-Wave Astronomy Paired Antenna Calibration System. We present a systematic study of several hundred test observations taken during the 2009-2010 winter observing season where we utilize CARMA's eight 3.5-m antennas to monitor an atmospheric calibrator while simultaneously acquiring science observations with 6.1-m and 10.4-m antennas on baselines ranging from a few hundred meters to ~2 km. We find that C-PACS is systematically successful at improving coherence on long baselines under a variety of atmospheric conditions. We find that the angular separation between the atmospheric calibrator and target source is the most important consideration, with consistently successful phase correction at CARMA requiring a suitable calibrator located $\lesssim$6$^\circ$ away from the science target. We show that cloud cover does not affect the success of C-PACS. We demonstrate C-PACS in typical use by applying it to the observations of the nearby very luminous infrared galaxy Arp 193 in $^{12}$CO(2-1) at a linear resolution of ~70 pc (0.12" x 0.18"), 3 times better than previously published molecular maps of this galaxy. We resolve the molecular disk rotation kinematics and the molecular gas distribution and measure the gas surface densities and masses on 90 pc scales. We find that molecular gas constitutes $\sim30\%$ of the dynamical mass in the inner 700 pc of this object with a surface density $\sim10^4 M_\odot$ pc$^{-2}$; we compare these properties to those of the starburst region of NGC 253., Comment: 19 pages, 18 figures

We present observations of N2H+(1-0), HCO+(1-0), and HCN(1-0) toward the Serpens Main molecular cloud from the CARMA Large Area Star Formation Survey (CLASSy). We mapped 150 square arcminutes of Serpens Main with an angular resolution of 7 arcsecs. The gas emission is concentrated in two subclusters (the NW and SE subclusters). The SE subcluster has more prominent filamentary structures and more complicated kinematics compared to the NW subcluster. The majority of gas in the two subclusters has subsonic to sonic velocity dispersions. We applied a dendrogram technique with N2H+(1-0) to study the gas structures; the SE subcluster has a higher degree of hierarchy than the NW subcluster. Combining the dendrogram and line fitting analyses reveals two distinct relations: a flat relation between nonthermal velocity dispersion and size, and a positive correlation between variation in velocity centroids and size. The two relations imply a characteristic depth of 0.15 pc for the cloud. Furthermore, we have identified six filaments in the SE subcluster. These filaments have lengths of 0.2 pc and widths of 0.03 pc, which is smaller than a characteristic width of 0.1 pc suggested by Herschel observations. The filaments can be classified into two types based on their properties. The first type, located in the northeast of the SE subcluster, has larger velocity gradients, smaller masses, and nearly critical mass-per-unit-length ratios. The other type, located in the southwest of the SE subcluster, has the opposite properties. Several YSOs are formed along two filaments which have supercritical mass per unit length ratios, while filaments with nearly critical mass-per-unit-length ratios are not associated with YSOs, suggesting that stars are formed on gravitationally unstable filaments., Comment: Accepted to ApJ. 38 pages, 16 figures, 5 tables

How do we as a community encourage the reuse of software for telescope operations, data processing, and calibration? How can we support making codes used in research available for others to examine? Continuing the discussion from last year Bring out your codes! BoF session, participants separated into groups to brainstorm ideas to mitigate factors which inhibit code sharing and nurture those which encourage code sharing. The BoF concluded with the sharing of ideas that arose from the brainstorming sessions and a brief summary by the moderator., Comment: To be published in Proceedings of ADASS XXIII. Links to notes from brainstorming sessions are available here: http://asterisk.apod.com/wp/?p=543

The Astrophysics Source Code Library (ASCL, http://ascl.net/) is an online registry of over 700 source codes that are of interest to astrophysicists, with more being added regularly. The ASCL actively seeks out codes as well as accepting submissions from the code authors, and all entries are citable and indexed by ADS. All codes have been used to generate results published in or submitted to a refereed journal and are available either via a download site or froman identified source. In addition to being the largest directory of scientist-written astrophysics programs available, the ASCL is also an active participant in the reproducible research movement with presentations at various conferences, numerous blog posts and a journal article. This poster provides a description of the ASCL and the changes that we are starting to see in the astrophysics community as a result of the work we are doing., Comment: Four pages, two figures. To be published in the Proceedings of ADASS XXIII, which took place September 29-October 3, 2013. The Astrophysics Source Code Library can be accessed at http://www.ascl.net; a concise directory of codes can be accessed at http://asterisk.apod.com/wp/?page_id=12

The Astrophysics Source Code Library, started in 1999, has in the past three years grown from a repository for 40 codes to a registry of over 700 codes that are now indexed by ADS. What comes next? We examine the future of the ASCL, the challenges facing it, the rationale behind its practices, and the need to balance what we might do with what we have the resources to accomplish., Comment: To be published in ADASS XXIII Proceedings. ASCL can be accessed at http://www.ascl.net

We examine the formation of clusters of galaxies in numerical simulations of a QUMOND cosmogony with massive sterile neutrinos. Clusters formed in these exploratory simulations develop higher velocities than those found in {\Lambda}CDM simulations. The bulk motions of clusters attain about 1000 km/s by low redshift, comparable to observations whereas {\Lambda}CDM simulated clusters tend to fall short. Similarly, high pairwise velocities are common in cluster-cluster collisions like the Bullet cluster. There is also a propensity for the most massive clusters to be larger in QUMOND and to appear earlier than in {\Lambda}CDM, potentially providing an explanation for 'pink elephants' like El Gordo. However, it is not obvious that the cluster mass function can be recovered., Comment: 11 pages, 8 figures, accepted for publication in ApJ

While software and algorithms have become increasingly important in astronomy, the majority of authors who publish computational astronomy research do not share the source code they develop, making it difficult to replicate and reuse the work. In this paper we discuss the importance of sharing scientific source code with the entire astrophysics community, and propose that journals require authors to make their code publicly available when a paper is published. That is, we suggest that a paper that involves a computer program not be accepted for publication unless the source code becomes publicly available. The adoption of such a policy by editors, editorial boards, and reviewers will improve the ability to replicate scientific results, and will also make the computational astronomy methods more available to other researchers who wish to apply them to their data., Comment: Accepted by Astronomy and Computing. 10 pages

We present the Evolution of molecular Gas in Normal Galaxies (EGNoG) survey, an observational study of molecular gas in 31 star-forming galaxies from z=0.05 to z=0.5, with stellar masses of (4-30)x10^10 M_Sun and star formation rates of 4-100 M_Sun yr^-1. This survey probes a relatively un-observed redshift range in which the molecular gas content of galaxies is expected to have evolved significantly. To trace the molecular gas in the EGNoG galaxies, we observe the CO(1-0) and CO(3-2) rotational lines using the Combined Array for Research in Millimeter-wave Astronomy (CARMA). We detect 24 of 31 galaxies and present resolved maps of 10 galaxies in the lower redshift portion of the survey. We use a bimodal prescription for the CO to molecular gas conversion factor, based on specific star formation rate, and compare the EGNoG galaxies to a large sample of galaxies assembled from the literature. We find an average molecular gas depletion time of 0.76 \pm 0.54 Gyr for normal galaxies and 0.06 \pm 0.04 Gyr for starburst galaxies. We calculate an average molecular gas fraction of 7-20% at the intermediate redshifts probed by the EGNoG survey. By expressing the molecular gas fraction in terms of the specific star formation rate and molecular gas depletion time (using typical values), we also calculate the expected evolution of the molecular gas fraction with redshift. The predicted behavior agrees well with the significant evolution observed from z~2.5 to today., Comment: Accepted for publication in the Astrophysical Journal; 29 pages, 20 figures, 6 tables

As observations of molecular gas in galaxies are pushed to lower star formation rate galaxies at higher redshifts, it is becoming increasingly important to understand the conditions of the gas in these systems to properly infer their molecular gas content. The rotational transitions of the carbon monoxide (CO) molecule provide an excellent probe of the gas excitation conditions in these galaxies. In this paper we present the results from the gas excitation sample of the Evolution of molecular Gas in Normal Galaxies (EGNoG) survey at the Combined Array for Research in Millimeter-wave Astronomy (CARMA). This subset of the full EGNoG sample consists of four galaxies at z~0.3 with star formation rates of 40-65 M_Sun yr^-1 and stellar masses of ~2x10^11 M_Sun. Using the 3 mm and 1 mm bands at CARMA, we observe both the CO(1-0) and CO(3-2) transitions in these four galaxies in order to probe the excitation of the molecular gas. We report robust detections of both lines in three galaxies (and an upper limit on the fourth), with an average line ratio, r_31 = L'_CO(3-2) / L'_CO(1-0), of 0.46 \pm 0.07 (with systematic errors \lesssim 40%), which implies sub-thermal excitation of the CO(3-2) line. We conclude that the excitation of the gas in these massive, highly star-forming galaxies is consistent with normal star-forming galaxies such as local spirals, not starbursting systems like local ultra-luminous infrared galaxies. Since the EGNoG gas excitation sample galaxies are selected from the main sequence of star-forming galaxies, we suggest that this result is applicable to studies of main sequence galaxies at intermediate and high redshifts, supporting the assumptions made in studies that find molecular gas fractions in star forming galaxies at z~1-2 to be an order of magnitude larger than what is observed locally., Comment: Accepted for publication in the Astrophysical Journal, to appear January 2013; 18 pages, 10 figures, 6 tables

The Astrophysics Source Code Library (ASCL), founded in 1999, is a free on-line registry for source codes of interest to astronomers and astrophysicists. The library is housed on the discussion forum for Astronomy Picture of the Day (APOD) and can be accessed at http://ascl.net. The ASCL has a comprehensive listing that covers a significant number of the astrophysics source codes used to generate results published in or submitted to refereed journals and continues to grow. The ASCL currently has entries for over 500 codes; its records are citable and are indexed by ADS. The editors of the ASCL and members of its Advisory Committee were on hand at a demonstration table in the ADASS poster room to present the ASCL, accept code submissions, show how the ASCL is starting to be used by the astrophysics community, and take questions on and suggestions for improving the resource., Comment: Description of ASCL display table at ADASS XXII (Champaign, IL; November, 2012) for proceedings; 4 pages, 2 figures. The ASCL, indexed by ADS, is available at ascl.net A PowerPoint presentation running at the table is available online: http://asterisk.apod.com/wp/?p=194 Some of the resources and information made available at the table are listed online: http://asterisk.apod.com/wp/?p=216

Progress is being made in code discoverability and preservation, but as discussed at ADASS XXI, many codes still remain hidden from public view. With the Astrophysics Source Code Library (ASCL) now indexed by the SAO/NASA Astrophysics Data System (ADS), the introduction of a new journal, Astronomy & Computing, focused on astrophysics software, and the increasing success of education efforts such as Software Carpentry and SciCoder, the community has the opportunity to set a higher standard for its science by encouraging the release of software for examination and possible reuse. We assembled representatives of the community to present issues inhibiting code release and sought suggestions for tackling these factors. The session began with brief statements by panelists; the floor was then opened for discussion and ideas. Comments covered a diverse range of related topics and points of view, with apparent support for the propositions that algorithms should be readily available, code used to produce published scientific results should be made available, and there should be discovery mechanisms to allow these to be found easily. With increased use of resources such as GitHub (for code availability), ASCL (for code discovery), and a stated strong preference from the new journal Astronomy & Computing for code release, we expect to see additional progress over the next few years., Comment: Birds of a Feather session at ADASS XXII (Champaign, IL; November, 2012) for proceedings; 4 pages. Organized by the Astrophysics Source Code Library (ASCL), which is available at ascl.net Unedited notes taken at the session are available here: http://asterisk.apod.com/wp/?p=192

The isolation, simple apparent structure, and low luminosity of the nearby spiral galaxy NGC 6503 make it an ideal candidate for an in-depth kinematic and photometric study. We introduce a new publicly available code, DiskFit, that implements procedures for fitting non-axisymmetries in either kinematic or photometric data. We use DiskFit to analyze new Halpha and CO velocity field data as well as HI kinematics from Greisen et al. to search for non-circular motions in the disc of NGC 6503. We find NGC 6503 to have remarkably regular gas kinematics that are well-described by rotation only. We also use DiskFit and a new Ks-band image of NGC 6503 to constrain photometric models of the disc, bar and bulge. We find the galaxy to be photometrically dominated by the disc. We find NGC 6503 to contain a faint bar and an exponential bulge which together contribute only ~5% of the total galaxy light. The combination of our kinematic and photometric DiskFit models suggest that NGC 6503 contains a weak, end-on bar that may have produced its Type II surface brightness profile but is unlikely to be responsible for its strong sigma-drop., Comment: Accepted for publication in MNRAS; 15 pages, 15 figures, 3 tables; The DiskFit code can be found at http://www.physics.rutgers.edu/~spekkens/diskfit/

Building on the "drPACS" contribution at ADASS XX of a simple Unix pipeline infrastructure, we implemented a pipeline toolkit using the package MIRIAD to combine Interferometric and Single Dish data (MIS). This was prompted by our observations made with the Combined Array For Research in Millimeter-wave Astronomy (CARMA) interferometer of the star-forming region NGC 1333, a large survey highlighting the new 23-element and singledish observing modes. The project consists of 20 CARMA datasets each containing interferometric as well as simultaneously obtained single dish data, for 3 molecular spectral lines and continuum, in 527 different pointings, covering an area of about 8 by 11 arcminutes. A small group of collaborators then shared this toolkit and their parameters via CVS, and scripts were developed to ensure uniform data reduction across the group. The pipeline was run end-to-end each night as new observations were obtained, producing maps that contained all the data to date. We will show examples of the scripts and data products. This approach could serve as a model for repeated calibration and mapping of large mixed-mode correlation datasets from ALMA.

Much of scientific progress now hinges on the reliability, falsifiability and reproducibility of computer source codes. Astrophysics in particular is a discipline that today leads other sciences in making useful scientific components freely available online, including data, abstracts, preprints, and fully published papers, yet even today many astrophysics source codes remain hidden from public view. We review the importance and history of source codes in astrophysics and previous efforts to develop ways in which information about astrophysics codes can be shared. We also discuss why some scientist coders resist sharing or publishing their codes, the reasons for and importance of overcoming this resistance, and alert the community to a reworking of one of the first attempts for sharing codes, the Astrophysics Source Code Library (ASCL). We discuss the implementation of the ASCL in an accompanying poster paper. We suggest that code could be given a similar level of referencing as data gets in repositories such as ADS., Comment: ASCL codes are now incoorporated into ADS