13 results on '"Tran CW"'
Search Results
2. TIGIT and PD-L1 co-blockade promotes clonal expansion of multipotent, non-exhausted antitumor T cells by facilitating co-stimulation.
- Author
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Nutsch K, Banta KL, Wu TD, Tran CW, Mittman S, Duong E, Nabet BY, Qu Y, Williams K, Müller S, Patil NS, Chiang EY, and Mellman I
- Abstract
Blockade of immune checkpoints PD-1 and TIGIT has demonstrated activity in mouse tumor models and human patients with cancer. Although these coinhibitory receptors can restrict signaling in CD8
+ T cells by regulating their associated co-stimulatory receptors CD28 and CD226, the functional consequences of combining PD-1 and TIGIT blockade remain poorly characterized. In mouse tumor models, we show that combination blockade elicited CD226-driven clonal expansion of tumor antigen-specific CD8+ T cells. The expanded clones emerged from a population of stem-like cells in draining lymph nodes, entering the blood as a previously unidentified single-phenotype, multiclonal population. Upon reaching the tumor, these transiting cells expanded further and differentiated into effector or exhausted T cells, with combination blockade restricting entry into the exhaustion pathway by favoring co-stimulation. Thus, PD-1 and TIGIT inhibition helps shape the repertoire of tumor-reactive CD8+ T cells in draining lymph nodes and determines their immunological fate in the tumor to enhance therapeutic benefit. Analysis of clinical trial samples suggests a similar mechanism may also occur in patients with cancer., Competing Interests: Competing interests: The authors declare the following competing interests: all authors are employees of Genentech, a member of the Roche group, which develops and markets drugs for profit., (© 2024. The Author(s).)- Published
- 2024
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3. Coenzyme A fuels T cell anti-tumor immunity.
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St Paul M, Saibil SD, Han S, Israni-Winger K, Lien SC, Laister RC, Sayad A, Penny S, Amaria RN, Haydu LE, Garcia-Batres CR, Kates M, Mulder DT, Robert-Tissot C, Gold MJ, Tran CW, Elford AR, Nguyen LT, Pugh TJ, Pinto DM, Wargo JA, and Ohashi PS
- Subjects
- Animals, CD8-Positive T-Lymphocytes, Cell Differentiation, Humans, Lymphocyte Activation, Mice, Coenzyme A metabolism, T-Lymphocyte Subsets metabolism
- Abstract
Metabolic programming is intricately linked to the anti-tumor properties of T cells. To study the metabolic pathways associated with increased anti-tumor T cell function, we utilized a metabolomics approach to characterize three different CD8
+ T cell subsets with varying degrees of anti-tumor activity in murine models, of which IL-22-producing Tc22 cells displayed the most robust anti-tumor activity. Tc22s demonstrated upregulation of the pantothenate/coenzyme A (CoA) pathway and a requirement for oxidative phosphorylation (OXPHOS) for differentiation. Exogenous administration of CoA reprogrammed T cells to increase OXPHOS and adopt the CD8+ Tc22 phenotype independent of polarizing conditions via the transcription factors HIF-1α and the aryl hydrocarbon receptor (AhR). In murine tumor models, treatment of mice with the CoA precursor pantothenate enhanced the efficacy of anti-PDL1 antibody therapy. In patients with melanoma, pre-treatment plasma pantothenic acid levels were positively correlated with the response to anti-PD1 therapy. Collectively, our data demonstrate that pantothenate and its metabolite CoA drive T cell polarization, bioenergetics, and anti-tumor immunity., Competing Interests: Declaration of interests M.S.P., S.D.S., and P.S.O. have filed for a patent pertaining to this work., (Copyright © 2021 Elsevier Inc. All rights reserved.)- Published
- 2021
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4. Hypoxia-inducible factor 1 alpha limits dendritic cell stimulation of CD8 T cell immunity.
- Author
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Tran CW, Gold MJ, Garcia-Batres C, Tai K, Elford AR, Himmel ME, Elia AJ, and Ohashi PS
- Subjects
- Animals, Cells, Cultured, Dendritic Cells metabolism, Gene Knockout Techniques, Hypoxia-Inducible Factor 1, alpha Subunit metabolism, Interleukin-10 metabolism, Mice, Nitric Oxide Synthase Type II metabolism, Vascular Endothelial Growth Factor A metabolism, Biomarkers metabolism, CD8-Positive T-Lymphocytes immunology, Dendritic Cells cytology, Hypoxia-Inducible Factor 1, alpha Subunit genetics
- Abstract
Dendritic cells are sentinels of the immune system and represent a key cell in the activation of the adaptive immune response. Hypoxia-inducible factor 1 alpha (HIF-1α)-a crucial oxygen sensor stabilized during hypoxic conditions-has been shown to have both activating and inhibitory effects in immune cells in a context- and cell-dependent manner. Previous studies have demonstrated that in some immune cell types, HIF-1α serves a pro-inflammatory role. Genetic deletion of HIF-1α in macrophages has been reported to reduce their pro-inflammatory function. In contrast, loss of HIF-1α enhanced the pro-inflammatory activity of dendritic cells in a bacterial infection model. In this study, we aimed to further clarify the effects of HIF-1α in dendritic cells. Constitutive expression of HIF-1α resulted in diminished immunostimulatory capacity of dendritic cells in vivo, while conditional deletion of HIF-1α in dendritic cells enhanced their ability to induce a cytotoxic T cell response. HIF-1α-expressing dendritic cells demonstrated increased production of inhibitory mediators including IL-10, iNOS and VEGF, which correlated with their reduced capacity to drive effector CD8+ T cell function. Altogether, these data reveal that HIF-1α can promote the anti-inflammatory functions of dendritic cells and provides insight into dysfunctional immune responses in the context of HIF-1α activation., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
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5. Overproduction of IL-2 by Cbl-b deficient CD4 + T cells provides resistance against regulatory T cells.
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Han S, Chung DC, St Paul M, Liu ZQ, Garcia-Batres C, Elford AR, Tran CW, Chapatte L, and Ohashi PS
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- Animals, Interleukin-2 Receptor alpha Subunit, Mice, Inbred C57BL, Signal Transduction, Ubiquitin-Protein Ligases metabolism, Interleukin-2 genetics, T-Lymphocytes, Regulatory metabolism
- Abstract
Regulatory T cells are integral to the regulation of autoimmune and anti-tumor immune responses. However, several studies have suggested that changes in T cell signaling networks can result in T cells that are resistant to the suppressive effects of regulatory T cells. Here, we investigated the role of Cbl-b, an E3 ubiquitin ligase, in establishing resistance to Treg-mediated suppression. We found that the absence of Cbl-b, a negative regulator of multiple TCR signaling pathways, rendered T cells impartial to Treg suppression by regulating cytokine networks leading to improved anti-tumor immunity despite the presence of Treg cells in the tumor. Specifically, Cbl-b KO CD4
+ FoxP3- T cells hyper-produced IL-2 and together with IL-2 Rα upregulation served as an essential mechanism to escape suppression by Treg cells. Furthermore, we report that IL-2 serves as the central molecule required for cytokine-induced Treg resistance. Collectively our data emphasize the role of IL-2 as a key mechanism that renders CD4+ T cells resistant to the inhibitory effects of Treg cells., (© 2020 The Author(s). Published with license by Taylor & Francis Group, LLC.)- Published
- 2020
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6. Radiation and Heat Improve the Delivery and Efficacy of Nanotherapeutics by Modulating Intratumoral Fluid Dynamics.
- Author
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Stapleton S, Dunne M, Milosevic M, Tran CW, Gold MJ, Vedadi A, Mckee TD, Ohashi PS, Allen C, and Jaffray DA
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- Animals, Antibiotics, Antineoplastic administration & dosage, Breast Neoplasms metabolism, Breast Neoplasms pathology, Cell Proliferation drug effects, Cell Survival drug effects, Dose-Response Relationship, Drug, Doxorubicin administration & dosage, Doxorubicin pharmacology, Drug Screening Assays, Antitumor, Extracellular Fluid metabolism, Female, Humans, Mammary Neoplasms, Experimental metabolism, Mammary Neoplasms, Experimental pathology, Mice, Mice, SCID, Polyethylene Glycols administration & dosage, Polyethylene Glycols pharmacology, Structure-Activity Relationship, Tomography, X-Ray Computed, X-Rays, Antibiotics, Antineoplastic pharmacology, Breast Neoplasms drug therapy, Doxorubicin analogs & derivatives, Drug Delivery Systems, Extracellular Fluid drug effects, Hot Temperature, Mammary Neoplasms, Experimental drug therapy, Nanomedicine methods
- Abstract
Nanomedicine drug delivery systems are capable of transporting significant payloads to solid tumors. However, only a modest increase in antitumor efficacy relative to the standard of care has been observed. In this study, we demonstrate that a single dose of radiation or mild hyperthermia can substantially improve tumor uptake and distribution of nanotherapeutics, resulting in improved treatment efficacy. The delivery of nanomedicine was driven by a reduction in interstitial fluid pressure (IFP) and small perturbation of steady-state fluid flow. The transient effects on fluid dynamics in tumors with high IFP was also shown to dominate over immune cell endocytic capacity, another mechanism suspected of improving drug delivery. Furthermore, we demonstrate the specificity of this mechanism by showing that delivery of nanotherapeutics to low IFP tumors with high leukocyte infiltration does not benefit from pretreatment with radiation or heat. These results demonstrate that focusing on small perturbations to steady-state fluid dynamics, rather than large sustained effects or uncertain immune cell recruitment strategies, can impart a vulnerability to tumors with high IFP and enhance nanotherapeutic drug delivery and treatment efficacy.
- Published
- 2018
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7. Glycogen Synthase Kinase-3 Modulates Cbl-b and Constrains T Cell Activation.
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Tran CW, Saibil SD, Le Bihan T, Hamilton SR, Lang KS, You H, Lin AE, Garza KM, Elford AR, Tai K, Parsons ME, Wigmore K, Vainberg MG, Penninger JM, Woodgett JR, Mak TW, and Ohashi PS
- Subjects
- Amino Acid Sequence, Animals, Autoimmunity physiology, Enzyme Activation, Gene Expression Regulation immunology, Mice, Mice, Inbred C57BL, Mice, Knockout, Mice, Transgenic, Phosphatidylinositol 3-Kinases physiology, Phosphorylation, Phosphoserine metabolism, Protein Isoforms metabolism, Protein Processing, Post-Translational, Proto-Oncogene Proteins c-akt physiology, Sequence Alignment, Signal Transduction physiology, Species Specificity, Specific Pathogen-Free Organisms, T-Lymphocyte Subsets immunology, Adaptor Proteins, Signal Transducing metabolism, Glycogen Synthase Kinase 3 physiology, Immune Tolerance physiology, Lymphocyte Activation physiology, Proto-Oncogene Proteins c-cbl metabolism, T-Lymphocyte Subsets enzymology
- Abstract
The decision between T cell activation and tolerance is governed by the spatial and temporal integration of diverse molecular signals and events occurring downstream of TCR and costimulatory or coinhibitory receptor engagement. The PI3K-protein kinase B (PKB; also known as Akt) signaling pathway is a central axis in mediating proximal signaling events of TCR and CD28 engagement in T cells. Perturbation of the PI3K-PKB pathway, or the loss of negative regulators of T cell activation, such as the E3 ubiquitin ligase Cbl-b, have been reported to lead to increased susceptibility to autoimmunity. In this study, we further examined the molecular pathway linking PKB and Cbl-b in murine models. Our data show that the protein kinase GSK-3, one of the first targets identified for PKB, catalyzes two previously unreported phosphorylation events at Ser
476 and Ser480 of Cbl-b. GSK-3 inactivation by PKB abrogates phosphorylation of Cbl-b at these two sites and results in reduced Cbl-b protein levels. We further show that constitutive activation of PKB in vivo results in a loss of tolerance that is mediated through the downregulation of Cbl-b. Altogether, these data indicate that the PI3K-PKB-GSK-3 pathway is a novel regulatory axis that is important for controlling the decision between T cell activation and tolerance via Cbl-b., (Copyright © 2017 by The American Association of Immunologists, Inc.)- Published
- 2017
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8. An interaction between Scribble and the NADPH oxidase complex controls M1 macrophage polarization and function.
- Author
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Zheng W, Umitsu M, Jagan I, Tran CW, Ishiyama N, BeGora M, Araki K, Ohashi PS, Ikura M, and Muthuswamy SK
- Subjects
- Animals, Humans, Inflammation metabolism, Mice, Myeloid Cells metabolism, Phagosomes metabolism, Reactive Oxygen Species metabolism, Cell Membrane metabolism, Cell Polarity physiology, Intracellular Signaling Peptides and Proteins metabolism, Macrophages cytology, Macrophages metabolism, Membrane Proteins metabolism, NADPH Oxidases metabolism, Tumor Suppressor Proteins metabolism
- Abstract
The polarity protein Scribble (SCRIB) regulates apical-basal polarity, directional migration and tumour suppression in Drosophila and mammals. Here we report that SCRIB is an important regulator of myeloid cell functions including bacterial infection and inflammation. SCRIB interacts directly with the NADPH oxidase (NOX) complex in a PSD95/Dlg/ZO-1 (PDZ)-domain-dependent manner and is required for NOX-induced reactive oxygen species (ROS) generation in culture and in vivo. On bacterial infection, SCRIB localized to phagosomes in a leucine-rich repeat-dependent manner and promoted ROS production within phagosomes to kill bacteria. Unexpectedly, SCRIB loss promoted M1 macrophage polarization and inflammation. Thus, SCRIB uncouples ROS-dependent bacterial killing activity from M1 polarization and inflammatory functions of macrophages. Modulating the SCRIB-NOX pathway can therefore identify ways to manage infection and inflammation with implications for chronic inflammatory diseases, sepsis and cancer.
- Published
- 2016
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9. Surgical site infection after primary surgery for epithelial ovarian cancer: predictors and impact on survival.
- Author
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Tran CW, McGree ME, Weaver AL, Martin JR, Lemens MA, Cliby WA, Dowdy SC, and Bakkum-Gamez JN
- Subjects
- Carcinoma, Ovarian Epithelial, Female, Humans, Middle Aged, Neoplasms, Glandular and Epithelial pathology, Ovarian Neoplasms pathology, Retrospective Studies, Risk Factors, Surgical Wound Infection pathology, Survival Analysis, Treatment Outcome, Neoplasms, Glandular and Epithelial surgery, Ovarian Neoplasms surgery, Surgical Wound Infection etiology
- Abstract
Objective: Surgical site infection (SSI) following epithelial ovarian cancer (EOC) primary surgery (PS) occurs in 10-15% of women. Perioperative factors associated with SSI and impact of SSI on survival were determined., Methods: EOC cases that underwent PS from 1/2/2003 to 12/30/2011 were retrospectively reviewed. SSIs were defined according to ACS NSQIP. Logistic regression models were fit to identify factors associated with SSI. Cox proportional hazards models were utilized to evaluate the association of patient and perioperative characteristics with overall survival (OS) and disease-free survival (DFS)., Results: Among 888 cases, 96 (10.8%) developed SSI: 32 superficial, 2 deep, and 62 organ/space. Factors independently associated with superficial SSI were increasing BMI (odds ratio 1.41 [95% confidence interval, 1.12, 1.76] per 5kg/m(2)), increasing operative time (1.24 [1.02, 1.50] per hour), and advanced stage (III/IV) (10.22 [1.37, 76.20]). Factors independently associated with organ/space SSI were history of gastroesophageal reflux disease (2.13 [1.23, 3.71]), surgical complexity (intermediate 3.11 [1.02, 9.49]; high 8.07 [2.60, 25.09]; referent: low), and residual disease (RD) (measureable ≤1cm 1.77 [0.96, 3.27]; suboptimal >1cm (3.36 [1.48, 7.61]; referent: microscopic). Occurrence of superficial (hazard ratio 1.69 [1.12, 2.57]) or organ/space (1.46 [1.07, 2.00]) SSI was independently associated with worse OS. SSI occurrence was not independently associated with DFS., Conclusions: SSI after PS is associated with decreased OS. Most risk factors for SSI are not modifiable. Alternative measures to lower rates of SSIs are needed as this may improve OS. Preoperative identification of SSI risk factors may assist in risk-assessment and operative planning., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2015
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10. Risk-scoring model for prediction of non-home discharge in epithelial ovarian cancer patients.
- Author
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AlHilli MM, Tran CW, Langstraat CL, Martin JR, Weaver AL, McGree ME, Mariani A, Cliby WA, and Bakkum-Gamez JN
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- Counseling, Female, Hospital Mortality, Humans, Length of Stay statistics & numerical data, Logistic Models, Middle Aged, Predictive Value of Tests, Retrospective Studies, Risk Assessment, Risk Factors, Statistics, Nonparametric, Survival Rate, Hospices statistics & numerical data, Ovarian Neoplasms surgery, Patient Discharge statistics & numerical data, Rehabilitation Centers statistics & numerical data, Skilled Nursing Facilities statistics & numerical data
- Abstract
Background: Identification of preoperative factors predictive of non-home discharge after surgery for epithelial ovarian cancer (EOC) may aid counseling and optimize discharge planning. We aimed to determine the association between preoperative risk factors and non-home discharge., Study Design: Patients who underwent primary surgery for EOC at Mayo Clinic between January 2, 2003 and December 29, 2008 were included. Demographic, preoperative, and intraoperative factors were retrospectively abstracted. Logistic regression models were fit to identify preoperative factors associated with non-home discharge. Multivariable models were developed using stepwise and backward variable selection. A risk-scoring system was developed for use in preoperative counseling., Results: Within our cohort of 587 EOC patients, 12.8% were not discharged home (61 went to a skilled nursing facility, 1 to a rehabilitation facility, 1 to hospice, and there were 12 in-hospital deaths). Median length of stay was 7 days (interquartile range [IQR] 5, 10 days) for patients dismissed home compared with 11 days (IQR 7, 17 days) for those with non-home dismissals (p < 0.001). In multivariable analyses, patients with advanced age (odds ratio [OR] 3.75 95% CI [2.57, 5.48], p < 0.001), worse Eastern Cooperative Oncology Group (ECOG) performance status (OR 0.92 [95% CI 0.43, 1.97] for ECOG performance status 1 vs 0 and OR 5.40 (95% CI 2.42, 12.03) for score of 2+ vs 0; p < 0.001), greater American Society of Anesthesiologists (ASA) score (OR 2.03 [95% CI 1.02, 4.04] for score ≥3 vs < 3, p = 0.04), and higher CA-125 (OR 1.28 [95% CI 1.12, 1.46], p < 0.001) were less likely to be discharged home. The unbiased estimate of the c-index was excellent at 0.88, and the model had excellent calibration., Conclusions: Identification of preoperative factors associated with non-home discharge can assist patient counseling and postoperative disposition planning., (Copyright © 2013 American College of Surgeons. Published by Elsevier Inc. All rights reserved.)
- Published
- 2013
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11. Natural killer cell activation enhances immune pathology and promotes chronic infection by limiting CD8+ T-cell immunity.
- Author
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Lang PA, Lang KS, Xu HC, Grusdat M, Parish IA, Recher M, Elford AR, Dhanji S, Shaabani N, Tran CW, Dissanayake D, Rahbar R, Ghazarian M, Brüstle A, Fine J, Chen P, Weaver CT, Klose C, Diefenbach A, Häussinger D, Carlyle JR, Kaech SM, Mak TW, and Ohashi PS
- Subjects
- Analysis of Variance, Animals, Cytotoxicity Tests, Immunologic, Enzyme-Linked Immunosorbent Assay, Flow Cytometry, Histological Techniques, Interferon-alpha metabolism, Mice, NK Cell Lectin-Like Receptor Subfamily K immunology, Real-Time Polymerase Chain Reaction, Arenaviridae Infections immunology, CD8-Positive T-Lymphocytes immunology, Chronic Disease, Communicable Diseases immunology, Immunity, Cellular immunology, Killer Cells, Natural immunology, Lymphocyte Activation immunology, Lymphocytic choriomeningitis virus
- Abstract
Infections with HIV, hepatitis B virus, and hepatitis C virus can turn into chronic infections, which currently affect more than 500 million patients worldwide. It is generally thought that virus-mediated T-cell exhaustion limits T-cell function, thus promoting chronic disease. Here we demonstrate that natural killer (NK) cells have a negative impact on the development of T-cell immunity by using the murine lymphocytic choriomeningitis virus. NK cell-deficient (Nfil3(-/-), E4BP4(-/-)) mice exhibited a higher virus-specific T-cell response. In addition, NK cell depletion caused enhanced T-cell immunity in WT mice, which led to rapid virus control and prevented chronic infection in lymphocytic choriomeningitis virus clone 13- and reduced viral load in DOCILE-infected animals. Further experiments showed that NKG2D triggered regulatory NK cell functions, which were mediated by perforin, and limited T-cell responses. Therefore, we identified an important role of regulatory NK cells in limiting T-cell immunity during virus infection.
- Published
- 2012
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12. In vivo microfocal computed tomography and micro-magnetic resonance imaging evaluation of antiresorptive and antiinflammatory drugs as preventive treatments of osteoarthritis in the rat.
- Author
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Jones MD, Tran CW, Li G, Maksymowych WP, Zernicke RF, and Doschak MR
- Subjects
- Animals, Disease Models, Animal, Drug Therapy, Combination, Epiphyses chemistry, Epiphyses drug effects, Etidronic Acid pharmacology, Female, Femur diagnostic imaging, Femur drug effects, Femur pathology, Magnetic Resonance Imaging methods, Meloxicam, Osteoarthritis, Knee diagnostic imaging, Osteoarthritis, Knee pathology, Osteophyte drug therapy, Rats, Rats, Sprague-Dawley, Risedronic Acid, Stifle drug effects, Stifle pathology, Stifle surgery, Tibia diagnostic imaging, Tibia drug effects, Tibia pathology, Tomography, X-Ray Computed methods, Water chemistry, Alendronate pharmacology, Anti-Inflammatory Agents, Non-Steroidal pharmacology, Bone Density Conservation Agents pharmacology, Etidronic Acid analogs & derivatives, Osteoarthritis, Knee drug therapy, Thiazines pharmacology, Thiazoles pharmacology
- Abstract
Objective: To determine whether treatment with an antiresorptive drug in combination with an antiinflammatory drug reduces periarticular bone and soft tissue adaptations associated with the progression of posttraumatic secondary osteoarthritis (OA)., Methods: We used in vivo microfocal computed tomography (micro-CT) to map bony adaptations and in vivo micro-magnetic resonance imaging (micro-MRI) to examine joint inflammation in a rat model of surgically induced OA secondary to knee triad injury. We examined the arthroprotective effects of the bisphosphonates alendronate and risedronate and the nonsteroidal antiinflammatory drug (NSAID) meloxicam., Results: Micro-CT revealed reduced levels of periarticular trabecular bone loss in animals with knee triad injury treated with the bisphosphonate drugs alendronate or risedronate, or the NSAID meloxicam, compared with untreated animals. Alendronate treatment reduced bony osteophyte development. While risedronate as a monotherapy did not positively impact osteophytogenesis, combination therapy with risedronate and meloxicam reduced osteophyte severity somewhat. Micro-MRI revealed an increased, diffuse water signal in the epiphyses of untreated rats with knee triad injury 8 weeks after surgery, suggestive of a bone marrow lesion-like stimulus. In contrast, meloxicam-treated rats showed a significant reduction in fluid signal compared with both bisphosphonate-treated groups 8 weeks after surgery. Histologic analysis qualitatively confirmed the chondroprotective effect of both bisphosphonate treatments, showing fewer degradative changes compared with untreated rats with knee triad injury., Conclusion: Our findings indicate that select combinations of bisphosphonate and NSAID drug therapy in the early stages of secondary OA preserve trabecular bone mass and reduce the impact of osteophytic bony adaptations and bone marrow lesion-like stimulus. Bisphosphonate and NSAID therapy may be an effective disease-modifying drug regimen if administered early after the initial injury.
- Published
- 2010
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13. The fine-scale and complex architecture of human copy-number variation.
- Author
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Perry GH, Ben-Dor A, Tsalenko A, Sampas N, Rodriguez-Revenga L, Tran CW, Scheffer A, Steinfeld I, Tsang P, Yamada NA, Park HS, Kim JI, Seo JS, Yakhini Z, Laderman S, Bruhn L, and Lee C
- Subjects
- Humans, Oligonucleotide Array Sequence Analysis methods, Gene Dosage, Genetic Variation, Genome, Human genetics, Tandem Repeat Sequences
- Abstract
Despite considerable excitement over the potential functional significance of copy-number variants (CNVs), we still lack knowledge of the fine-scale architecture of the large majority of CNV regions in the human genome. In this study, we used a high-resolution array-based comparative genomic hybridization (aCGH) platform that targeted known CNV regions of the human genome at approximately 1 kb resolution to interrogate the genomic DNAs of 30 individuals from four HapMap populations. Our results revealed that 1020 of 1153 CNV loci (88%) were actually smaller in size than what is recorded in the Database of Genomic Variants based on previously published studies. A reduction in size of more than 50% was observed for 876 CNV regions (76%). We conclude that the total genomic content of currently known common human CNVs is likely smaller than previously thought. In addition, approximately 8% of the CNV regions observed in multiple individuals exhibited genomic architectural complexity in the form of smaller CNVs within larger ones and CNVs with interindividual variation in breakpoints. Future association studies that aim to capture the potential influences of CNVs on disease phenotypes will need to consider how to best ascertain this previously uncharacterized complexity.
- Published
- 2008
- Full Text
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