1. Co-operative Non-Enzymic Base Recognition.
- Author
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Podder, Sunil K.
- Subjects
TRANSFER RNA ,MOLECULAR rotation ,MOLECULAR dynamics ,NUCLEIC acids ,NUCLEOTIDES ,BIOCHEMISTRY - Abstract
The absorbance and the optical rotatory dispersion of solutions of GpGpGpC and GpCpCpC individually and of the mixture of these two were measured in 0.1 M phosphate buffer (pit 7.2) as a function of temperature and concentration. The data indicate that below room temperature GpGpGpC self-associates into large aggregates which presumably involve both G · C and G · G base pairs. It interacts as well with GpGpCpC to form a 1:1 GpGpGpC: GpCPCPC complex containing 4 G · C base pairs. The kinetics of formation of the 1:1 complex, as well as of self-associated complexes, were studied by temperature jump relaxation method. The transition temperature Tm of the 1:1 complex was determined from the variation of the relaxation amplitude with temperature. From the concentration dependence of T
m , the values of - 21.6 kcal/mole and -50 entropy units were calculated for ΔH and ΔS respectively for the formation of the 1:1 complex. Temperature-jump relaxation experiments on the individual components over the temperature range 20-40 °C indicate a single process which was too rapid to follow (t0.5 ... 5 µsec), corresponding to the melting of a single stranded helix. In experiments with mixed solutions a slower measurable process was observed in the milisecond time range, which was attributed to 1:1 complex formation with a recombination rate constant kr = 5.4 106 M-1 thermodynamic and kenetic data in terms of the "all or none"model suggest that the second base pair is the limiting step in the G.C helix formation. A single base pair adjacent to a pre-existing helical sequence can be formed in 0.1µsec.In contrast, the apparent formation and dissociation rate contants of GpGpGpC aggregates are smaller than those of the 1.1 complex by several orders of magnitude. The existtence of a syn-anti type equilibrium below room temperature is postulated to explain this observation. [ABSTRACT FROM AUTHOR]- Published
- 1971
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