Search

Two new sesterterpenoids, atractylodes japonica terpenoid acid I (1) and atractylodes japonica terpenoid aldehyde I (2), were isolated from the rhizomes of Atractylodes japonica Koidz. ex Kitam together with ten known compounds (3–12). Their structures were elucidated on the basis of comprehensive spectroscopic analysis (1D/2D NMR, HRESIMS and IR). In addition, all of these isolated compounds were evaluated for their cytotoxic activities against human gastric cancer cell MGC-803 and human hepatocellular cancer cell HepG-2. Most of them exhibited moderate to weak inhibitory effects with IC50 values in the range of 25.15–88.85 μM except for 9–12. [ABSTRACT FROM AUTHOR]

Bacillus subtilis is regarded as a promising microbial expression system in bioengineering due to its high stress resistance, nontoxic, low codon preference and grow fast. The strain has a relatively efficient expression system, as it has at least three protein secretion pathways and abundant molecular chaperones, which guarantee its expression ability and compatibility. Currently, many proteins are expressed in Bacillus subtilis, and their application prospects are broad. Although Bacillus subtilis has great advantages compared with other prokaryotes related to protein expression and secretion, it still faces deficiencies, such as low wild-type expression, low product activity, and easy gene loss, which limit its large-scale application. Over the years, many researchers have achieved abundant results in the modification of Bacillus subtilis expression systems, especially the optimization of promoters, expression vectors, signal peptides, transport pathways and molecular chaperones. An optimal vector with a suitable promoter strength and other regulatory elements could increase protein synthesis and secretion, increasing industrial profits. This review highlights the research status of optimization strategies related to the expression system of Bacillus subtilis. Moreover, research progress on its application as a food-grade expression system is also presented, along with some future modification and application directions. [ABSTRACT FROM AUTHOR]

Feather, horn, hoof, and other keratin waste are protein-rich but limited by natural keratinase synthesis, activity, pH, and temperature stability. It is challenging to realize its large-scale application in industries. Bacillus subtilis spores are a safe, efficient, and highly resistant immobilized carrier, which can improve target proteins' resistance. In this research, KERQ7, the keratinase gene of Bacillus tequilensis strain Q7, was fused to the Bacillus subtilis genes coding for the coat proteins CotG and CotB, respectively, and displayed on the surface of B. subtilis spores. Compared with the free KERQ7, the immobilized KERQ7 showed a greater pH tolerance and heat resistance on the spore surface. The activity of CotG-KERQ7 is 1.25 times that of CotB-KERQ7, and CotG-KERQ7 is more stable. When the flexible linker peptide L3 was used to connect CotG and KERQ7, the activity was increased to 131.2 ± 3.4%, and the residual enzyme activity was still 62.5 ± 2.2% after being kept at 60 ℃ for 4 h. These findings indicate that the flexible linker and CotG were more effective for the spore surface display of keratinase to improve stress resistance and promote its wide application in feed, tanning, washing, and other industries. [ABSTRACT FROM AUTHOR]

Microbial electric syntrophy, involving direct electron transfer between electron-donating strains and electron-accepting strains, could reduce more than 50% of methane emissions and remove 90% of nitrate pollution in some wastewaters. Microbial electric syntrophy is also a key natural process allowing the survival of bacteria in harsh environmental conditions. Here we review natural and artificial cases of interspecies electron transfer in microbial syntrophy, with emphasis on methane production, electroactive bacteria, methanogens, anaerobic methane-oxidizing consortia, Geobacter species, phototrophic bacteria, co-cultures, anaerobic digestion, environmental remediation and microbial electrosynthesis. Environmental remediation includes nitrogen removal, reductive dechlorination and pollutant degradation. Microbial electrosynthesis can be used for carbon dioxide reduction. Conductive proteins and materials, and light-assisted electron transfer contribute to the direct interspecies electron transfer. [ABSTRACT FROM AUTHOR]

Detecting out-of-distribution (OOD) inputs plays a crucial role in guaranteeing the reliability of deep neural networks (DNNs) when deployed in real-world scenarios. However, DNNs typically exhibit overconfidence in OOD samples, which is attributed to the similarity in patterns between OOD and in-distribution (ID) samples. To mitigate this overconfidence, advanced approaches suggest the incorporation of auxiliary OOD samples during model training, where the outliers are assigned with an equal likelihood of belonging to any category. However, identifying outliers that share patterns with ID samples poses a significant challenge. To address the challenge, we propose a novel method, Virtual Outlier Smoothing (VOSo), which constructs auxiliary outliers using ID samples, thereby eliminating the need to search for OOD samples. Specifically, VOSo creates these virtual outliers by perturbing the semantic regions of ID samples and infusing patterns from other ID samples. For instance, a virtual outlier might consist of a cat’s face with a dog’s nose, where the cat’s face serves as the semantic feature for model prediction. Meanwhile, VOSo adjusts the labels of virtual OOD samples based on the extent of semantic region perturbation, aligning with the notion that virtual outliers may contain ID patterns. Extensive experiments are conducted on diverse OOD detection benchmarks, demonstrating the effectiveness of the proposed VOSo. Our code will be available at https://github.com/junz-debug/VOSo. [ABSTRACT FROM AUTHOR]