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Assessing persistent organic pollutant (POP) levels across regions helps evaluate environmental health and determine ecological risks. As an apex predator, the common dolphin (Delphinus delphis) serves as an excellent model for understanding POP exposure and impact in Eastern North Atlantic marine ecosystems. In this study, we collected biopsy samples of common dolphins in two ecoregions, the pelagic system of Madeira Island (Portugal) (n = 30) and in the continental shelf of Northwest Portugal (n = 14) to analyse organochlorine concentrations (PCBs, DDTs, Mirex, HCB) from their blubber. For both ecoregions, PCBs comprised the largest proportion of the total measured organochlorines (60% in Madeira Island and 85% in Northwest Portugal), followed by DDTs, and lastly, HCB. Considerable differences in the organochlorine profile were identified between samples from Madeira and Northwest Portugal, with common dolphins showing higher PCB loads in Northwest Portugal (53 ± 37 μg g -1 lw) compared to Madeira Island (11 ± 4.8 μg g -1 lw). The high levels of PCBs found in individuals from mainland Portugal - reaching values up to 140 μg g -1 lw - are some of the highest reported for the species worldwide, considerably exceeding toxicity thresholds. This is of particular concern as they may be potentially affecting important physiological processes of the animals. These results highlight the poor habitat quality in one of the studied regions, with potential impacts on ecosystem health, while offering valuable insights into the population structure of a species that remains understudied for effective management and conservation., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)