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The application of iron oxide quantum dots (IOQDs) in this study led to the development of a straightforward, easy, and selective approach for cytosine sensing. To examine the capability of IOQDs in detecting nucleobases, attempts have been made to gain insight into the characteristics of IOQDs, including UV/Vis spectroscopic analysis, infrared spectroscopy, fluorescence spectroscopy, transmission electron microscopy, and powder‐XRD. We introduced IOQDs with a mean particle size distribution of 5.71 ± 0.08 nm for detecting cytosine by harnessing a turn‐on fluorescence phenomenon. The fostering fluorescence response of IOQDs was triggered in the presence of cytosine. In comparison, the presence of other nucleobases did not further induce the fluorescence signal of IOQDs. It was concluded that the hydrogen bonding bridging the carboxylate and hydroxyl groups on the surface of QDs with the amine groups of cytosine results in the elevation of IOQDs fluorescence. [ABSTRACT FROM AUTHOR]