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The invasion of ship domains stands out as a significant factor contributing to the risk of collisions during vessel navigation. However, there is a lack of research on the mechanisms underlying the collision risks specifically related to merchant and fishing vessels in coastal waters. This study proposes an assessment method for collision risks between merchant and fishing vessels in coastal waters and validates it through a comparative analysis through visualization. First of all, the operational status of fishing vessels is identified. Collaboratively working fishing vessels are treated as a unified entity, expanding their ship domain during operation to assess collision risks. Secondly, to quantify the collision risk between ships, a collision risk index (CRI) is proposed and visualized based on the severity of the collision risk. Finally, taking the high-risk area for merchant and fishing vessel collisions in the Minjiang River Estuary as an example, this paper conducts an analysis that involves classifying ship collision scenarios, extracts risk data under different collision scenarios, and visually analyzes areas prone to danger. The results indicate that this method effectively evaluates the severity of collision risk, and the identified high-risk areas resulting from the analysis are verified by the number of accidents that occurred in the most recent three years. [ABSTRACT FROM AUTHOR]