6 results on '"Croatian Science Foundation"'
Search Results
2. Quantifying shape transition in anisotropic plasmonic nanoparticles through geometric inversion. Application to gold bipyramids
- Author
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Ministerio de Ciencia e Innovación (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Croatian Science Foundation, European Commission, Ikerbasque Basque Foundation for Science, Eusko Jaurlaritza, Montaño-Priede, José Luis, Sánchez-Iglesias, Ana, Mezzasalma, Stefano Antonio, Sancho-Parramon, Jordi, Grzelczak, Marek, Ministerio de Ciencia e Innovación (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Croatian Science Foundation, European Commission, Ikerbasque Basque Foundation for Science, Eusko Jaurlaritza, Montaño-Priede, José Luis, Sánchez-Iglesias, Ana, Mezzasalma, Stefano Antonio, Sancho-Parramon, Jordi, and Grzelczak, Marek
- Abstract
Unraveling the nuanced interplay between the morphology and the optical properties of plasmonic nanoparticles is crucial for targeted applications. Managing the relationship becomes significantly complex when dealing with anisotropic nanoparticles that defy a simple description using parameters like length, width, or aspect ratio. This complexity requires computationally intensive numerical modeling and advanced imaging techniques. To address these challenges, we propose a detailed structural parameter determination of gold nanoparticles using their two-dimensional projections (e.g., micrographs). Employing gold bipyramids (AuBPs) as a model morphology, we can determine their three-dimensional geometry and extract optical features computationally for comparison with the experimental data. To validate our inversion model’s effectiveness, we apply it to derive the structural parameters of AuBPs undergoing shape modification through oxidative etching. In summary, our findings allow for the precise characterization of structural parameters for plasmonic nanoparticles during shape transitions, potentially enhancing the comprehension of nanocrystal growth and optimizing plasmonic material design for various applications.
- Published
- 2024
3. Global machine learning potentials for molecular crystals
- Author
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Swedish Research Council, Croatian Science Foundation, Chalmers University of Technology, Žugec, Ivan, Geilhufe, R. Matthias, Lončarić, Ivor, Swedish Research Council, Croatian Science Foundation, Chalmers University of Technology, Žugec, Ivan, Geilhufe, R. Matthias, and Lončarić, Ivor
- Abstract
Molecular crystals are difficult to model with accurate first-principles methods due to large unit cells. On the other hand, accurate modeling is required as polymorphs often differ by only 1 kJ/mol. Machine learning interatomic potentials promise to provide accuracy of the baseline first-principles methods with a cost lower by orders of magnitude. Using the existing databases of the density functional theory calculations for molecular crystals and molecules, we train global machine learning interatomic potentials, usable for any molecular crystal. We test the performance of the potentials on experimental benchmarks and show that they perform better than classical force fields and, in some cases, are comparable to the density functional theory calculations.
- Published
- 2024
4. Predicting Biochemical and Physiological Parameters: Deep Learning from IgG Glycome Composition.
- Author
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Vujić A, Klasić M, Lauc G, Polašek O, Zoldoš V, and Vojta A
- Subjects
- Humans, Glycosylation, Glycomics methods, Male, Female, Biomarkers, Middle Aged, Adult, Aged, Cohort Studies, Glycoproteins, Immunoglobulin G metabolism, Deep Learning, Polysaccharides metabolism
- Abstract
In immunoglobulin G (IgG), N -glycosylation plays a pivotal role in structure and function. It is often altered in different diseases, suggesting that it could be a promising health biomarker. Studies indicate that IgG glycosylation not only associates with various diseases but also has predictive capabilities. Additionally, changes in IgG glycosylation correlate with physiological and biochemical traits known to reflect overall health state. This study aimed to investigate the power of IgG glycans to predict physiological and biochemical parameters. We developed two models using IgG N -glycan data as an input: a regression model using elastic net and a machine learning model using deep learning. Data were obtained from the Korčula and Vis cohorts. The Korčula cohort data were used to train both models, while the Vis cohort was used exclusively for validation. Our results demonstrated that IgG glycome composition effectively predicts several biochemical and physiological parameters, especially those related to lipid and glucose metabolism and cardiovascular events. Both models performed similarly on the Korčula cohort; however, the deep learning model showed a higher potential for generalization when validated on the Vis cohort. This study reinforces the idea that IgG glycosylation reflects individuals' health state and brings us one step closer to implementing glycan-based diagnostics in personalized medicine. Additionally, it shows that the predictive power of IgG glycans can be used for imputing missing covariate data in deep learning frameworks.
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- 2024
- Full Text
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5. Determinants of Human Asymmetry: Does Asymmetrical Retinal Vasculature Predict Asymmetry Elsewhere in the Body?
- Author
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Plećaš D, Gotovac Đogaš V, Polašek O, and Škunca Herman J
- Abstract
The aim of this study was to explore retinal vasculature asymmetry (ReVA) patterns in subjects from the islands of Vis and Korcula and the city of Split, Croatia. Asymmetry estimates were based on topographic image analysis of non-mydriatic retinal fundus photographs and compared with nine ophthalmic measurements, three Doppler-based pressure indices and eight frequencies of audiometry. ReVA was also correlated to the genomic runs of homozygosity (ROHs) and used in a Cox regression survival model, where we adjusted for the effects of sex, age and comorbidity. In 1873 subjects, ReVA estimates were significantly correlated with most ophthalmic asymmetry measures, less strongly with the ankle-brachial pressure index and only modestly with higher-amplitude audiometry asymmetries (lowest p = 0.020). ReVA was significantly correlated with the number of ROHs (r = 0.229, p < 0.001) but less strongly with the ROH length (r = 0.101, p < 0.001). The overlap of asymmetries was low, with only 107 subjects (5.7% of the total sample) who had two or more instances in which they were among the top 10%. Multiple asymmetries did not affect survival (HR = 0.74, 95% confidence intervals 0.45-1.22). Retinal vasculature asymmetry is a poor predictor of asymmetry elsewhere in the body. Despite its existence and apparent association with comorbidities, the observed extent of retinal vasculature asymmetry did not affect the lifespan in this population.
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- 2024
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6. Setting research priorities for global pandemic preparedness: An international consensus and comparison with ChatGPT's output.
- Author
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Song P, Adeloye D, Acharya Y, Bojude DA, Ali S, Alibudbud R, Bastien S, Becerra-Posada F, Berecki M, Bodomo A, Borrescio-Higa F, Buchtova M, Campbell H, Chan KY, Cheema S, Chopra M, Cipta DA, Castro LD, Ganasegeran K, Gebre T, Glasnović A, Graham CJ, Igwesi-Chidobe C, Iversen PO, Jadoon B, Lanza G, Macdonald C, Park C, Islam MM, Mshelia S, Nair H, Ng ZX, Htay MNN, Akinyemi KO, Parisi M, Patel S, Peprah P, Polasek O, Riha R, Rotarou ES, Sacks E, Sharov K, Stankov S, Supriyatiningsih W, Sutan R, Tomlinson M, Tsai AC, Tsimpida D, Vento S, Glasnović JV, Vokey LBV, Wang L, Wazny K, Xu J, Yoshida S, Zhang Y, Cao J, Zhu Y, Sheikh A, and Rudan I
- Subjects
- Child, Humans, Consensus, Research Design, Child Health, Pandemic Preparedness, COVID-19 epidemiology, COVID-19 prevention & control
- Abstract
Background: In this priority-setting exercise, we sought to identify leading research priorities needed for strengthening future pandemic preparedness and response across countries., Methods: The International Society of Global Health (ISoGH) used the Child Health and Nutrition Research Initiative (CHNRI) method to identify research priorities for future pandemic preparedness. Eighty experts in global health, translational and clinical research identified 163 research ideas, of which 42 experts then scored based on five pre-defined criteria. We calculated intermediate criterion-specific scores and overall research priority scores from the mean of individual scores for each research idea. We used a bootstrap (n = 1000) to compute the 95% confidence intervals., Results: Key priorities included strengthening health systems, rapid vaccine and treatment production, improving international cooperation, and enhancing surveillance efficiency. Other priorities included learning from the coronavirus disease 2019 (COVID-19) pandemic, managing supply chains, identifying planning gaps, and promoting equitable interventions. We compared this CHNRI-based outcome with the 14 research priorities generated and ranked by ChatGPT, encountering both striking similarities and clear differences., Conclusions: Priority setting processes based on human crowdsourcing - such as the CHNRI method - and the output provided by ChatGPT are both valuable, as they complement and strengthen each other. The priorities identified by ChatGPT were more grounded in theory, while those identified by CHNRI were guided by recent practical experiences. Addressing these priorities, along with improvements in health planning, equitable community-based interventions, and the capacity of primary health care, is vital for better pandemic preparedness and response in many settings., Competing Interests: Disclosure of interest: The authors completed the ICMJE Disclosure of Interest Form (available upon request from the corresponding author) and declare the following activities and/or relationships: IR is the Co-Editor in Chief, PS is the China Regional Editor, and DA is an Editorial Board Member of the Journal of Global Health. To ensure that any possible conflict of interest relevant to the journal has been addressed, this article was reviewed according to best practice guidelines of international editorial organisations., (Copyright © 2024 by the Journal of Global Health. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
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