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The widespread adoption of large-scale pre-training techniques has significantly advanced the development of medical foundation models, enabling them to serve as versatile tools across a broad range of medical tasks. However, despite their strong generalization capabilities, medical foundation models pre-trained on large-scale datasets tend to suffer from domain gaps between heterogeneous data, leading to suboptimal performance on specific tasks compared to specialist models, as evidenced by previous studies. In this paper, we explore a new perspective called "Knowledge Decomposition" to improve the performance on specific medical tasks, which deconstructs the foundation model into multiple lightweight expert models, each dedicated to a particular anatomical region, with the aim of enhancing specialization and simultaneously reducing resource consumption. To accomplish the above objective, we propose a novel framework named Low-Rank Knowledge Decomposition (LoRKD), which explicitly separates gradients from different tasks by incorporating low-rank expert modules and efficient knowledge separation convolution. The low-rank expert modules resolve gradient conflicts between heterogeneous data from different anatomical regions, providing strong specialization at lower costs. The efficient knowledge separation convolution significantly improves algorithm efficiency by achieving knowledge separation within a single forward propagation. Extensive experimental results on segmentation and classification tasks demonstrate that our decomposed models not only achieve state-of-the-art performance but also exhibit superior transferability on downstream tasks, even surpassing the original foundation models in task-specific evaluations. The code is available at here., Comment: The paper is an extended version of our conference paper published on CVPR 2024. This work has been submitted to the IEEE for possible publication

Medical foundation models pre-trained on large-scale datasets have demonstrated powerful versatile capabilities for various tasks. However, due to the gap between pre-training tasks (or modalities) and downstream tasks (or modalities), the real-world computation and speed constraints, it might not be straightforward to apply medical foundation models in the downstream scenarios. Previous methods, such as parameter efficient fine-tuning (PEFT) methods and knowledge distillation (KD) methods, are unable to simultaneously address the task (or modality) inconsistency and achieve personalized lightweight deployment under diverse real-world demands. To address the above issues, we propose a novel framework called Reprogramming Distillation (RD). On one hand, RD reprograms the original feature space of the foundation model so that it is more relevant to downstream scenarios, aligning tasks and modalities. On the other hand, through a co-training mechanism and a shared classifier, connections are established between the reprogrammed knowledge and the knowledge of student models, ensuring that the reprogrammed feature space can be smoothly mimic by the student model of different structures. Further, to reduce the randomness under different training conditions, we design a Centered Kernel Alignment (CKA) distillation to promote robust knowledge transfer. Empirically, we show that on extensive datasets, RD consistently achieve superior performance compared with previous PEFT and KD methods., Comment: MICCAI 2024

Training a unified model to take multiple targets into account is a trend towards artificial general intelligence. However, how to efficiently mitigate the training conflicts among heterogeneous data collected from different domains or tasks remains under-explored. In this study, we explore to leverage Mixture of Low-rank Adapters (MoLA) to mitigate conflicts in heterogeneous data training, which requires to jointly train the multiple low-rank adapters and their shared backbone. Specifically, we introduce two variants of MoLA, namely, MoLA-Grad and MoLA-Router, to respectively handle the target-aware and target-agnostic scenarios during inference. The former uses task identifiers to assign personalized low-rank adapters to each task, disentangling task-specific knowledge towards their adapters, thereby mitigating heterogeneity conflicts. The latter uses a novel Task-wise Decorrelation (TwD) loss to intervene the router to learn oriented weight combinations of adapters to homogeneous tasks, achieving similar effects. We conduct comprehensive experiments to verify the superiority of MoLA over previous state-of-the-art methods and present in-depth analysis on its working mechanism. Source code is available at: https://github.com/MediaBrain-SJTU/MoLA, Comment: ICML2024

The popularity of large-scale pre-training has promoted the development of medical foundation models. However, some studies have shown that although foundation models exhibit strong general feature extraction capabilities, their performance on specific tasks is still inferior to task-specific methods. In this paper, we explore a new perspective called ``Knowledge Decomposition'' to improve the performance on specific medical tasks, which deconstruct the foundation model into multiple lightweight expert models, each dedicated to a particular task, with the goal of improving specialization while concurrently mitigating resource expenditure. To accomplish the above objective, we design a novel framework named Low-Rank Knowledge Decomposition (LoRKD), which explicitly separates graidents by incorporating low-rank expert modules and the efficient knowledge separation convolution. Extensive experimental results demonstrate that the decomposed models perform well in terms of performance and transferability, even surpassing the original foundation models., Comment: CVPR 2024

Fraud detection remains a challenging task due to the complex and deceptive nature of fraudulent activities. Current approaches primarily concentrate on learning only one perspective of the graph: either the topological structure of the graph or the attributes of individual nodes. However, we conduct empirical studies to reveal that these two types of features, while nearly orthogonal, are each independently effective. As a result, previous methods can not fully capture the comprehensive characteristics of the fraud graph. To address this dilemma, we present a novel framework called Relation-Aware GNN with transFormer~(RAGFormer) which simultaneously embeds both semantic and topological features into a target node. The simple yet effective network consists of a semantic encoder, a topology encoder, and an attention fusion module. The semantic encoder utilizes Transformer to learn semantic features and node interactions across different relations. We introduce Relation-Aware GNN as the topology encoder to learn topological features and node interactions within each relation. These two complementary features are interleaved through an attention fusion module to support prediction by both orthogonal features. Extensive experiments on two popular public datasets demonstrate that RAGFormer achieves state-of-the-art performance. The significant improvement of RAGFormer in an industrial credit card fraud detection dataset further validates the applicability of our method in real-world business scenarios., Comment: Preprint.Under review