1. Chloroplast genomics unravels taxonomic status and evolutionary relationships in Euphorbia fauriei and E. pekinensis.
- Author
-
Raman G and Park S
- Subjects
- Chloroplasts genetics, Genomics methods, Republic of Korea, Euphorbia genetics, Euphorbia classification, Phylogeny, Genome, Chloroplast, Evolution, Molecular
- Abstract
Euphorbia fauriei, a perennial plant endemic to South Korea, exhibits both morphological characteristics and intricate genetic identities akin to E. pekinensis. This study aimed to provide clarity on the taxonomic status of E. faurirei and E. pekinensis through a comprehensive chloroplast genome analysis. Additionally, we sequenced the Acalypha australis chloroplast genome as an outgroup for the construction of a phylogenetic tree with other Euphorbia species. The three chloroplast genomes, ranging from 162,834 bp to 168,832 bp, displayed typical quadripartite structures. The Euphorbia genomes contained 111 unique genes, whereas the A. australis genome contained two additional protein-coding genes (PCGs), rpl32 and rps16. Comparative analysis unveiled the loss of rpl32 and rps16 as synapomorphic characteristics in Euphorbia, whereas the loss of infA occurred across Euphorbiaceae. High collinearity and sequence similarity were observed among Euphorbia species, accompanied by significant inversion regions in the E. pekinensis chloroplast genomes from China and Japan, indicating regional genetic variability. Nucleotide substitution analysis revealed that the ndh group exhibited the highest K
A /KS values (0.224), whereas the atp, psa, psb and rps groups had the lowest. Phylogenomic analysis utilizing whole genomes, PCGs, and intron and intergenic regions consistently demonstrated that E. pekinensis from South Korea clusters closely with E. fauriei. These findings challenge the current taxonomic distinction between E. pekinensis and E. fauriei in Korea, suggesting that while they exhibit distinct characteristics, E. fauriei should be considered a closely related subspecies rather than the same species as E. pekinensis. This study emphasizes the need for population studies to clarify the taxonomic relationships between E. pekinensis and E. fauriei., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2025
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