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Our new study of the species originally included in the genus Allolepidotus led to the taxonomic revision of the halecomorph species from the Triassic of Perledo, Italy. The morphological variation revealed by the analysis of the type material is sufficient to confirm four different taxa represented in the Perledo Formation. We correct the misunderstanding about the type species of Allolepidotus, which is A. ruppelii and not "A." bellottii as considered in the literature over the past two decades. The latter species was originally placed in the genus Semionotus. Fossils from the Kalkschieferzone of Besnasca/Ca' del Frate (Viggiù-Varese, Italy) and Meride (Ticino, Switzerland) which were referred to Allolepidotus, rather represent a species of Eoeugnathus. Therefore, we transfer the species Semionotus bellottii to that genus and propose the new combination E. bellottii. The second and only other species originally included in the genus Allolepidotus is transferred here to the new genus Perledovatus. The holotype of P. nothosomoides new comb. has been mechanically prepared, revealing additional anatomical information that allows to place this taxon in the halecomorph family Subortichthyidae. The other halecomorph species named from the Perledo Formation, Pholidophorus oblongus and Pholidophorus curionii, have been treated as junior synonyms of E. bellottii, but our analysis indicates that they represent distinct separate taxa. However, due to the loss of the type specimens, it is not possible to decide whether they might have been conspecific with other ray-finned fishes from the Middle Triassic of the Alps. [ABSTRACT FROM AUTHOR]

Obtaining reliable estimates of the effective number of breeders (Nb) and generational effective population size (Ne) for fishery‐important species is challenging because they are often iteroparous and highly abundant, which can lead to bias and imprecision. However, recent advances in understanding of these parameters, as well as the development of bias correction methods, have improved the capacity to generate reliable estimates. We utilized samples of both single‐cohort young of the year and mixed‐age adults from two geographically and genetically isolated stocks of the Australasian snapper (Chrysophrys auratus) to investigate the feasibility of generating reliable Nb and Ne estimates for a fishery species. Snapper is an abundant, iteroparous broadcast spawning teleost that is heavily exploited by recreational and commercial fisheries. Employing neutral genome‐wide SNPs and the linkage‐disequilibrium method, we determined that the most reliable Nb and Ne estimates could be derived by genotyping at least 200 individuals from a single cohort. Although our estimates made from the mixed‐age adult samples were generally lower and less precise than those based on a single cohort, they still proved useful for understanding relative differences in genetic effective size between stocks. The correction formulas applied to adjust for biases due to physical linkage of loci and age structure resulted in substantial upward modifications of our estimates, demonstrating the importance of applying these bias corrections. Our findings provide important guidelines for estimating Nb and Ne for iteroparous species with large populations. This work also highlights the utility of samples originally collected for stock structure and stock assessment work for investigating genetic effective size in fishery‐important species. [ABSTRACT FROM AUTHOR]

This study investigates the genetic diversity and population structure of the greasyback shrimp, Metapenaeus ensis (De Haan, 1844), within the Tam Giang - Cau Hai lagoon, Vietnam, by analyzing mtCOI genes from 91 individuals collected across four populations in nine sampling locations. High genetic diversity was found, with 34 unique haplotypes and 38 genetic variations identified. Most genetic variation occurred within populations (AMOVA), suggesting high gene flow. Low and non-significant Fst values and close genetic distances confirmed minimal differentiation among populations. These findings provide the first insights into M. ensis population genetics in this lagoon, informing conservation and management efforts. Understanding genetic diversity is crucial for sustainable management and conservation of marine species. This research aids in understanding population resilience, potential impacts of overfishing, and may assist in developing sustainable harvest strategies of this economically important shrimp species. [ABSTRACT FROM AUTHOR]

This article summarizes the Special Issue of Evolutionary Applications focused on "Advances in Salmonid Genetics." Contributions to this Special Issue were primarily presented at the Coastwide Salmonid Genetics Meeting, held in Boise, ID in June 2023, with a focus on Pacific salmonids of the west coast region of North America. Contributions from other regions of the globe are also included and further convey the importance of various salmonid species across the world. This Special Issue is comprised of 22 articles that together illustrate major advances in genetic and genomic tools to address fundamental and applied questions for natural populations of salmonids, ranging from mixed‐stock analyses, to conservation of genetic diversity, to adaptation to local environments. These studies provide valuable insight for molecular ecologists since salmonid systems offer a window into evolutionary applications that parallel conservation efforts relevant and applicable beyond salmonid species. Here, we provide an introduction and a synopsis of articles in this Special Issue, along with future directions in this field. We present this Special Issue in honor of Fred Utter, a founder and leader in the field of salmonid genetics, who passed away in 2023. [ABSTRACT FROM AUTHOR]

Kryptolebias marmoratus (Kmar), a teleost fish of the order Cyprinodontiformes, has a suite of unique phenotypes and behaviors not observed in other fishes. Many of these phenotypes are discrete and highly plastic—varying over time within an individual, and in some cases reversible. Kmar and its interfertile sister species, K. hermaphroditus, are the only known self‐fertile vertebrates. This unusual sexual mode has the potential to provide unique insights into the regulation of vertebrate sexual development, and also lends itself to genetics. Kmar is easily adapted to the lab and requires little maintenance. However, its internal fertilization and small clutch size limits its experimental use. To support Kmar as a genetic model, we compared alternative husbandry techniques to maximize recovery of early cleavage‐stage embryos. We find that frequent egg collection enhances yield, and that protease treatment promotes the greatest hatching success. We completed a forward mutagenesis screen and recovered several mutant lines that serve as important tools for genetics in this model. Several will serve as useful viable recessive markers for marking crosses. Importantly, the mutant kissylips lays embryos at twice the rate of wild‐type. Combining frequent egg collection with the kissylips mutant background allows for a substantial enhancement of early embryo yield. These improvements were sufficient to allow experimental analysis of early development and the successful mono‐ and bi‐allelic targeted knockout of an endogenous tyrosinase gene with CRISPR/Cas9 nucleases. Collectively, these tools will facilitate modern developmental genetics in this fascinating fish, leading to future insights into the regulation of plasticity. Research Highlights: A forward genetic screen in the self‐fertile fish, Kryptolebias marmoratus, identified useful mutants for use as markers and to enhance egg output.Optimization of husbandry further improved egg yield for embryo manipulation.New resources enabled targeted gene knockout in K. marmoratus using CRISPR/Cas9. [ABSTRACT FROM AUTHOR]

Fishing has the potential to influence the life‐history traits of exploited populations. However, our understanding of how fisheries can induce evolutionary genetic changes remains incomplete. The discovery of large‐effect loci linked with ecologically important life‐history traits, such as age at maturity in Atlantic salmon (Salmo salar), provides an opportunity to study the impacts of temporally varying fishing pressures on these traits. A 93‐year archive of fish scales from wild Atlantic salmon catches from the northern Baltic Sea region allowed us to monitor variation in adaptive genetic diversity linked with age at maturity of wild Atlantic salmon populations. The dataset consisted of samples from both commercial and recreational fisheries that target salmon on their spawning migration. Using a genotyping‐by‐sequencing approach (GT‐seq), we discovered strong within‐season allele frequency changes at the vgll3 locus linked with Atlantic salmon age at maturity: fishing in the early season preferentially targeted the vgll3 variant linked with older maturation. We also found within‐season temporal variation in catch proportions of different wild Atlantic salmon subpopulations. Therefore, selective pressures of harvesting may vary depending on the seasonal timing of fishing, which has the potential to cause evolutionary changes in key life‐history traits and their diversity. This knowledge can be used to guide fisheries management to reduce the effects of fishing practices on salmon life‐history diversity. Thus, this study provides a tangible example of using genomic approaches to infer, monitor and help mitigate human impacts on adaptively important genetic variation in nature. [ABSTRACT FROM AUTHOR]

Conserved noncoding elements in vertebrates are enriched around transcription factor loci associated with development. However, loss and rapid divergence of conserved noncoding elements has been reported in teleost fish, albeit taking only few genomes into consideration. Taking advantage of the recent increase in high-quality teleost genomes, we focus on studying the evolution of teleost conserved noncoding elements, carrying out targeted genomic alignments and comparisons within the teleost phylogeny to detect conserved noncoding elements and reconstruct the ancestral teleost conserved noncoding elements repertoire. This teleost-centric approach confirms previous observations of extensive vertebrate conserved noncoding elements loss early in teleost evolution, but also reveals massive conserved noncoding elements gain in the teleost stem-group over 300 million years ago. Using synteny-based association to link conserved noncoding elements to their putatively regulated target genes, we show the most teleost gained conserved noncoding elements are found in the vicinity of orthologous loci involved in transcriptional regulation and embryonic development that are also associated with conserved noncoding elements in other vertebrates. Moreover, teleost and vertebrate conserved noncoding elements share a highly similar motif and transcription factor binding site vocabulary. We suggest that early teleost conserved noncoding element gains reflect a restructuring of the ancestral conserved noncoding element repertoire through both extreme divergence and de novo emergence. Finally, we support newly identified pan-teleost conserved noncoding elements have potential for accurate resolution of teleost phylogenetic placements in par with coding sequences, unlike ancestral only elements shared with spotted gar. This work provides new insight into conserved noncoding element evolution with great value for follow-up work on phylogenomics, comparative genomics, and the study of gene regulation evolution in teleosts. [ABSTRACT FROM AUTHOR]

Habitat fragmentation is among the main threats to freshwater fish biodiversity, with expected effects including genetic impacts due to disturbance of migration and declining population size. Major concern falls on highly exploited species such as Prochilodus magdalenae, a migratory characiform fish endemic to the Magdalena River basin supporting much of the Colombian artisanal fishery, whose migration route was interrupted by the Ituango hydroelectric project in the Cauca River. To determine the potential effects of fragmentation, this study evaluated the population genetics of this species on both geographical (upstream and downstream of the dam) and temporal (before and after the construction) scales by using 11 species-specific microsatellite markers. Contrary to expectation, genetic diversity and structure remained relatively stable. This study provided no evidence of genetic impacts on P. magdalenae associated with fragmentation over the short term (4–10 years, 5–12 generations) despite persisting threats, genetic evidence of bottleneck, and a high degree of inbreeding, showing the ability of this species to withstand disturbance of its habitat. [ABSTRACT FROM AUTHOR]

The progress of aquaculture heavily depends on the efficient utilization of diverse genetic resources to enhance production efficiency and maximize profitability. Single nucleotide polymorphisms (SNPs) have been widely used in the study of aquaculture genomics, genetics, and breeding research since they are the most prevalent molecular markers on the genome. Currently, a large number of SNP markers from cultured fish species are scattered in individual studies, making querying complicated and data reuse problematic. We compiled relevant SNP data from literature and public databases to create a fish SNP database, FishSNP (http://bioinfo.ihb.ac.cn/fishsnp), and also used a unified analysis pipeline to process raw data that the author of the literature did not perform SNP calling on to obtain SNPs with high reliability. This database presently contains 45,690,243 (45 million) nonredundant SNP data for 13 fish species, with 30,288,958 (30 million) of those being high-quality SNPs. The main function of FishSNP is to search, browse, annotate and download SNPs, which provide researchers various and comprehensive associated information. [ABSTRACT FROM AUTHOR]

Simple Summary: As an endemic and vulnerable fish from the upper Yangtze River in China, Schizothorax kozlovi holds significant scientific and ecological importance, yet it has received little attention so far. In this paper, we reported the characterization of the mitochondrial genome of S. kozlovi, and further investigated the phylogenetic relationships of Schizothorax. The results showed that the mitochondrial genome of S. kozlovi had a total size of 16,585 bp, a circular arrangement, and contained 13 PCGs, 22 tRNAs, two rRNAs, and two non-coding regions. Moreover, the phylogenetic analyses demonstrated that Schizothorax could be classified into four clades, and S. kozlovi was closely related to Schizothorax chongi. The present study enriched the basic biological data for S. kozlovi and provided fundamental references for the conservation of S. kozlovi and Schizothorax. Schizothorax kozlovi is an endemic and vulnerable fish species found in the upper Yangtze River in China. Over the past few years, the population resources of S. kozlovi have been nearly completely depleted owing to multiple contributing threats. While the complete mitochondrial genomes serve as important molecular markers for phylogenetic and genetic studies, the mitochondrial genome of S. kozlovi has still received little attention. In this study, we analyzed the characterization of the mitochondrial genome of S. kozlovi and investigated the phylogenetic relationships of Schizothorax. The complete mitochondrial genome of S. kozlovi was 16,585 bp in length, which contained thirty-seven genes (thirteen protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), twenty-two transfer RNA genes (tRNAs)) and two non-coding regions for the origin of light strand (OL) and the control region (CR). There were nine overlapping regions and seventeen intergenic spacers regions in the mitochondrial genome. The genome also showed a bias towards A + T content (55.01%) and had a positive AT-skew (0.08) and a negative GC-skew (−0.20). All the PCGs employed the ATG or GTG as the start codon and TAA, TAG, or single T as the stop codon. Additionally, all of the tRNAs displayed a typical cloverleaf secondary structure, except trnS1 which lacked the D arm. The phylogenetic analysis, based on the maximum likelihood (ML) and Bayesian inference (BI) methods, revealed that the topologies of the phylogenetic tree divided the Schizothorax into four clades and did not support the classification of Schizothorax based on morphology. The phylogenetic status of S. kozlovi was closely related to that of S. chongi. The present study provides valuable genomic information for S. kozlovi and new insights in phylogenetic relationships of Schizothorax. These data could also offer fundamental references and guidelines for the management and conservation of S. kozlovi and other species of Schizothorax. [ABSTRACT FROM AUTHOR]

We integrate multidisciplinary observations to provide a regional-scale synthesis of river drainage reconfiguration in Southland (New Zealand) between the Miocene and the Holocene. Distributions of sedimentary clasts, including alluvial gold, garnets and chromite, are combined with freshwater fish genetics, surface geomorphology, and basement geology to constrain river drainage directions and interconnections through time. River evolution in much of the South Island has been dominated by localised tectonic uplift linked to distant Alpine Fault tectonism. In the southeast, the rise of ranges between Central Otago and Southland severed initial long-distance southward drainage and gold transport and isolated fish species. Plio-Pleistocene range uplift caused the recycling of older alluvial gold deposits into the new Southland river systems. The most significant Southland drainage reorientations have occurred through the Pleistocene, in parallel with similar processes in Central Otago. In particular, the Pomahaka River has evolved geomorphologically from a Southland-linked catchment to become a major tributary of the Clutha catchment, with associated biological evolution of distinctive endemic freshwater fish. [ABSTRACT FROM AUTHOR]

The giant freshwater prawn Macrobrachium rosenbergii distributed from tropical to subtropical regions, is a warm-water species, and its survival temperature is 14–35 °C, which greatly limits its culture cycle and culture area in China. Therefore, it is urgent to cultivate a new high quality, high yield variety with improved cold-resistance, but the genetic parameters for cold-resistance traits are unknown in M. rosenbergii. In this study, the cold-resistance of adult M. rosenbergii populations was tested using the indoor artificial cooling method. Individuals were selected from 139 families of Shufeng G3 generation and cultured for 200 days. A linear mixed model was constructed by ASReml-R to evaluate the genetic parameters of the cold-resistance trait (cooling degree hours, CDH) and growth traits (body weight, BW, and body length, BL) based on the restricted maximum likelihood (REML) method. The results show that the heritability of CDH was low (0.12±0.05), while the growth traits (BW and BL) had low to moderate heritability, with 0.20±0.06 for BW and 0.06±0.04 for BL. The phenotypic and genetic correlation between BW and BL was significantly positive, but significantly negative phenotypic and genetic correlations were detected between CDH and BW and between CDH and BL. Furthermore, the analysis of the differences between cold-resistance and phenotypic traits showed that the female reproductive status, exoskeleton hardness and claw number of adult prawns had a great influence on the cold-resistance of M. rosenbergii (P<0.05), indicating that adults with claws and hard exoskeletons are preferred as parents in subsequent breeding selection. The present results can be attributed to the selection and breeding of a new cold-resistant variety of M. rosenbergii. [ABSTRACT FROM AUTHOR]

CD4 T helper cells are an important group of cells in the immune system of vertebrates and express CD4 receptor on the cell surface. In mammals, the CD4 receptor is encoded by a single copy gene, whilst in fish, two copies of cd4 genes, namely cd4-1 and cd4-2, are found. In this study, the ectodomains of grass carp (Ctenopharyngodon idella, Ci) CD4-1 and CD4-2 were expressed in the E. coli cells and used to generate monoclonal antibodies in mice. Western blotting, confocal microscopy and flow cytometry were performed to characterize the monoclonal antibodies. It has been shown that the CiCD4-1 and CiCD4-2 monoclonal antibodies had good specificity to react with the recombinant ectodomains of CiCD4-1 and CiCD4-2 expressed in the CHO-S cells and the native CD4 molecules of grass carp. The CiCD4-1 monoclonal antibody did not recognize CiCD4-2 and verse versa. In addition, the CD4-1 and CD4-2 monoclonal antibodies specifically recognized the CD4-1 and CD4-2 receptors expressed in the HEK293 cells and native molecules of fish cells. Further, the percentages of lymphocytes in immune tissues of healthy fish were analyzed by flow cytometry. It was found that 17.6% of lymphocytes were CD4-1+ cells and 22.5% were CD4-2+ in the head kidney. In the spleen, 13.1% of lymphocytes were CD4-1+ and 18.6% were CD4-2+ while 7.3% of blood lymphocytes were CD4-1+ cells and 8.8% were CD4-2+ cells. The availability of the CD4-1 and CD4-2 monoclonal antibodies provides antibody-based tools for further elucidation of the functions of CD4 T cells in grass carp. [ABSTRACT FROM AUTHOR]

The differentiation and developmental trajectory of fish gonads, significantly important for fish breeding, culture, and production, has long been a focal point in the fields of fish genetics and developmental biology. However, the mechanism of gonadal differentiation in leopard coral grouper (Plectropomus leopardus) remains unclear. This study investigates the 17β-Hydroxysteroid Dehydrogenase (Hsd17b) gene family in P. leopardus, with a focus on gene characterization, expression profiling, and functional analysis. The results reveal that the P. leopardus's Hsd17b gene family comprises 11 members, all belonging to the SDR superfamily. The amino acid similarity is only 12.96%, but conserved motifs, such as TGxxxGxG and S-Y-K, are present in these genes. Hsd17b12a and Hsd17b12b are unique homologs in fish, and chromosomal localization has confirmed that they are not derived from different transcripts of the same gene, but rather are two independent genes. The Hsd17b family genes, predominantly expressed in the liver, heart, gills, kidneys, and gonads, are involved in synthesizing or metabolizing sex steroid hormones and neurotransmitters, with their expression patterns during gonadal development categorized into three distinct categories. Notably, Hsd17b4 and Hsd17b12a were highly expressed in the testis and ovary, respectively, suggesting their involvement in the development of reproductive cells in these organs. Fluorescence in situ hybridization (FISH) further indicated specific expression sites for these genes, with Hsd17b4 primarily expressed in germ stem cells and Hsd17b12a in oocytes. This comprehensive study provides foundational insights into the role of the Hsd17b gene family in gonadal development and steroidogenesis in P. leopardus, contributing to the broader understanding of fish reproductive biology and aquaculture breeding. [ABSTRACT FROM AUTHOR]

Age‐at‐maturity and iteroparity are two life history variations of steelhead trout (Oncorhynchus mykiss) that are believed to increase population resilience and stability. While repeat‐spawning individuals are thought to have historically made up a substantial portion of the reproductive population in the Columbia River and the majority of females still attempt outmigration as kelts, return rates of repeat‐spawner are low throughout the basin and below 1% for the furthest migrating stocks. Notably, outmigrating adults exhibit variation in rematuration phenology, displaying either "consecutive" (reproduce immediately the following season) or "skip" (delay spawning for future seasons) spawning patterns. Here, we use low coverage whole genome sequencing of consecutive versus skip spawning female Columbia River steelhead from two populations to test for genomic differences between these two iteroparous phenotypes. We identified genomic regions on several chromosomes which were associated with the phenology of iteroparity, including a region on chromosome 25 containing two genes, estradiol receptor beta (ERβ) and glycoprotein hormone beta‐5 (GPHB5), which, in mammals, are estrogen‐sensitive and expressed in reproductive tissues. Allele frequencies in this ERβ/GPHB5 region differed among female steelhead of different age at maturity, but not males. These genes also shared an island of linkage disequilibrium with the SIX6 gene, 600Kbp away on the same chromosome, a region of known association with age‐at‐maturity. These observations contribute to growing evidence that age‐at‐maturity and the phenology of iteroparity are determined by overlapping physiological processes and genetic pathways. [ABSTRACT FROM AUTHOR]

Microphysogobio longidorsalis is endemic to South Korea and inhabits small areas of the Namhangang, Bukhangang, and Imjingang Rivers in the Hangang River water system. Endemic species usually are more vulnerable than species with a wide distribution. Notably, there is a lack of basic conservation data for M. longidorsalis. We analyzed 19 microsatellite loci in six populations of M. longidorsalis in South Korea to characterize their population structure and genetic diversity. The genetic diversity of the microsatellites was 0.741–0.779, which is lower than that of other freshwater fishes. The pairwise genetic differentiation of microsatellite (FST) values ranged from 0.007 to 0.041, suggesting low genetic differentiation between the populations. The Jojongicheon stream population (CP) had an effective population size of <100. Therefore, conservation efforts are required to prevent inbreeding depression in M. longidorsalis. Discriminant analysis of principal components showed that the Hangang River water system would be a single management unit (MU). Our findings provide fundamental genetic insights for the formulation of conservation strategies for M. longidorsalis. [ABSTRACT FROM AUTHOR]

Aquaculture plays a crucial role in meeting the increasing global demand for food and protein sources. However, its expansion is followed by increasing challenges, such as infectious disease outbreaks and antibiotic misuse. The present study focuses on the genetic and functional analyses of two Lacticaseibacillus paracasei (BF3 and RT4) and two Lactiplantibacillus plantarum (BF12 and WT12) strains isolated from a rotifer cultivation tank used for turbot larviculture. Whole-genome sequencing (WGS) and bioinformatics analyses confirmed their probiotic potential, the absence of transferable antibiotic resistance genes, and the absence of virulence and pathogenicity factors. Bacteriocin mining identified a gene cluster encoding six plantaricins, suggesting their role in the antimicrobial activity exerted by these strains. In vitro cell-free protein synthesis (IV-CFPS) analyses was used to evaluate the expression of the plantaricin genes. The in vitro-synthesized class IIb (two-peptide bacteriocins) plantaricin E/F (PlnE/F) exerted antimicrobial activity against three indicator microorganisms, including the well-known ichthyopathogen Lactococcus garvieae. Furthermore, MALDI-TOF MS on colonies detected the presence of a major peptide that matches the dimeric form of plantaricins E (PlnE) and F (PlnF). This study emphasizes the importance of genome sequencing and bioinformatic analysis for evaluating aquaculture probiotic candidates. Moreover, it provides valuable insights into their genetic features and antimicrobial mechanisms, paving the way for their application as probiotics in larviculture, which is a major bottleneck in aquaculture. [ABSTRACT FROM AUTHOR]

This document titled "Arabic Abstracts" is a compilation of abstracts from various authors and institutions in the field of aquaculture. The authors come from diverse backgrounds and countries such as Australia, Norway, China, Italy, Bangladesh, and more. The abstracts cover a range of topics including aquaculture disease control, marine sciences, fish genetics, fishery management, and more. This resource provides a snapshot of current research in the field and may be useful for library patrons conducting research on specific aquaculture topics. [Extracted from the article]

Schizothorax kozlovi is an endemic and vulnerable fish species found in the upper Yangtze River in China. Over the past few years, the population resources of S. kozlovi have been nearly completely depleted owing to multiple contributing threats. While the complete mitochondrial genomes serve as important molecular markers for phylogenetic and genetic studies, the mitochondrial genome of S. kozlovi has still received little attention. In this study, we analyzed the characterization of the mitochondrial genome of S. kozlovi and investigated the phylogenetic relationships of Schizothorax. The complete mitochondrial genome of S. kozlovi was 16,585 bp in length, which contained thirty-seven genes (thirteen protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), twenty-two transfer RNA genes (tRNAs)) and two non-coding regions for the origin of light strand (OL) and the control region (CR). There were nine overlapping regions and seventeen intergenic spacers regions in the mitochondrial genome. The genome also showed a bias towards A + T content (55.01%) and had a positive AT-skew (0.08) and a negative GC-skew (−0.20). All the PCGs employed the ATG or GTG as the start codon and TAA, TAG, or single T as the stop codon. Additionally, all of the tRNAs displayed a typical cloverleaf secondary structure, except trnS1 which lacked the D arm. The phylogenetic analysis, based on the maximum likelihood (ML) and Bayesian inference (BI) methods, revealed that the topologies of the phylogenetic tree divided the Schizothorax into four clades and did not support the classification of Schizothorax based on morphology. The phylogenetic status of S. kozlovi was closely related to that of S. chongi. The present study provides valuable genomic information for S. kozlovi and new insights in phylogenetic relationships of Schizothorax. These data could also offer fundamental references and guidelines for the management and conservation of S. kozlovi and other species of Schizothorax.

The document provides information about continuing education courses offered at a fisheries conference. The courses cover a range of topics including data visualization, data analysis, genetics, Bayesian inference, and science communication. The instructors come from various institutions and organizations, ensuring diverse perspectives. The courses are offered at different times throughout the conference, and fees vary depending on membership status. [Extracted from the article]

This document is a correction notice for an article titled "Temporal-scale assessment of population genetics of the freshwater fish Prochilodus magdalenae in an area impacted by construction of a dam" published in the journal Hydrobiologia. The correction addresses two errors in the original article: the incorrect abbreviation of the first author's surname and the presence of the word "characiform" in the discussion section. The correct version of the article has been provided. The correction notice also includes a statement from the publisher, Springer Nature, emphasizing their neutrality regarding jurisdictional claims and institutional affiliations. The authors of the article are Kevin León García-Castro and Edna Judith Márquez. [Extracted from the article]

The proliferation of opportunistic pathogens Vibrio parahaemolyticus , Vibrio alginolyticus , and Vibrio owensii have impeded the rapid development of aquaculture farming. The study aimed to analyze the whole genome of pathogenic Vibrio strains associated with hepatopancreatic necrosis in Penaeus vannamei. The analysis included genomic characterization, virulence genes profiling, antibiotic resistance genes (ARGs) identification, antimicrobial resistance phenotypes, clustered regularly interspaced short palindromic repeats (CRISPR) and prophage prediction, multi-locus sequence typing, and pan-genome analysis of Vibrio isolates from Guangdong and Jiangsu provinces, China. Sequence analysis of the specimens revealed 29 V. parahaemolyticus isolates , three V. alginolyticus isolates, and one V. owensii isolate. Their genomes are 4.9–5.9 Mbp in size, with a GC content of 44.4–45.4%. Each Vibrio isolate harbored >120 virulence genes. Out of the 33 isolates, 13 (39%) demonstrated multidrug-resistant (MDR). Notably, at least 14 isolates exhibited heightened resistance to sulfamethoxazole, erythromycin, and amoxicillin, with a cumulative detection of 20 ARGs. Nevertheless, no significant correlation was found between the composition of ARGs and the observed antimicrobial resistance phenotypes. All Vibrio isolates differed in the presence of prophage and CRISPR sequences; and two of these prophages harbored virulence genes but not ARGs. The study identified 17 distinct sequence types (STs) in V. parahaemolyticus isolates, primarily ST415 (n = 5), while two Vibrio isolates were classified as ST3. Using the 117 V. parahaemolyticus strains available in the National Center for Biotechnology Information database as a reference, pan-genomic analysis and phylogenetic analysis of the core genome revealed that clinical isolates of the same STs clustered into the same clade, irrespective of isolation date and geographic origins. In summary, these data enhance our understanding of the molecular characteristics and epidemiological risk of Vibrio strains in southern China, especially regarding shrimp aquaculture. • Comprehensive whole genome analysis of 33 pathogenic Vibrio isolates. • Discrepancy observed between ARG composition and phenotypic drug resistance. • Prophage sequences were found in all Vibrio isolates, and two of these prophages harbored virulence genes. • Superior resolution of core genome analysis compared to MLST. [ABSTRACT FROM AUTHOR]