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Microbes affect the global carbon cycle that influences climate change and are in turn influenced by environmental change. Here, we use data from a long-term whole-ecosystem warming experiment at a boreal peatland to answer how temperature and CO 2 jointly influence communities of abundant, diverse, yet poorly understood, non-fungi microbial Eukaryotes (protists). These microbes influence ecosystem function directly through photosynthesis and respiration, and indirectly, through predation on decomposers (bacteria and fungi). Using a combination of high-throughput fluid imaging and 18S amplicon sequencing, we report large climate-induced, community-wide shifts in the community functional composition of these microbes (size, shape, and metabolism) that could alter overall function in peatlands. Importantly, we demonstrate a taxonomic convergence but a functional divergence in response to warming and elevated CO 2 with most environmental responses being contingent on organismal size: warming effects on functional composition are reversed by elevated CO 2 and amplified in larger microbes but not smaller ones. These findings show how the interactive effects of warming and rising CO 2 levels could alter the structure and function of peatland microbial food webs-a fragile ecosystem that stores upwards of 25% of all terrestrial carbon and is increasingly threatened by human exploitation., (© 2024 John Wiley & Sons Ltd.)

Treating peat with nutrient-rich ash significantly increases the content of different nutrients in the substrate. Such ash treatment promotes the revegetation of abandoned extracted peatlands. The aim of this study is to analyze the effect of wood ash (WA15 = 15 t ha−1 and WA10 = 10 t ha−1), oil shale ash (OSA8 = 8 t ha−1), and a mixture of wood ash and oil shale ash (WA10 + OSA8) on the revegetation (vascular plants and bryophytes) of the Puhatu abandoned extracted peatland in NE Estonia. The following results were obtained: (1) The MRPP tests indicate that there are compositional differences between the treatments. (2) Altogether, 23 vascular plant and 3 bryophyte species were recorded in the treatment areas. (3) Nine years after these ash treatments, the highest mean vascular plant species richness was recorded for WA15 (3.8 ± 0.3) and the lowest for OSA8 (2.0 ± 0.3). (4) A greater number of vascular plant species was observed in the WA15 area. (5) Mixed ash and wood ash had a significant effect on the amount of biomass in vascular plants. Treating with either wood ash or a mixture of ash ensured the rapid formation of vascular plants and bryophyte layers, contributing to the restoration of the abandoned peatland ecosystem. [ABSTRACT FROM AUTHOR]

The purpose of this study was to assess the biological and physicochemical quality of Tonga Lake, a RAMSAR site situated in Algeria, during the Coronavirus pandemic. Phytoplankton and zooplankton, as well as several physicochemical variables (water temperature, pH, dissolved oxygen, total suspended particulate, and nutrients), were analyzed monthly at two stations during 2019-2020. The results showed that the physicochemical variables were within the tolerable ranges, except for phosphate, which slightly exceeded the reference threshold. No phytoplankton blooms were encountered; cyanobacteria were the most abundant during the study period and reached their maximum in winter (137888 cells/l), while dinoflagellates and diatoms reached their maxima in autumn and spring, respectively (23809 and 102083 cells/l). while the maximum of all the identified zooplankton groups was recorded in the spring. Dinoflagellates were strongly affected by pH and total suspended particulate. On the other hand, high significant correlations were reported between protozoa and dissolved oxygen, as well as between rotifers and water temperature. Nonetheless, no-significant correlations were detected between the remaining groups (diatoms, cyanobacteria, cladocerans, and copepods) and the investigated environmental variables. [ABSTRACT FROM AUTHOR]

The conservation of decorated caves is highly dependent on airflows in the karst network and through the surrounding host rock. Airflows are driven by the pressure gradient and influenced by the shape of the karst conduits and the permeability of the carbonate rock massif. Cosquer Cave is an Upper Paleolithic decorated cave, half submerged in a coastal karst, where conservation is also dependent on the cave's pools connected to the sea. Hydroclimatic data, such as air pressure and temperature and the water level inside and outside the cave, have been measured for several years to identify the main processes governing the water level variations, the airflows, and the air renewal. The data show unusual behavior for a karst: the karst air pressure is nearly always higher than the atmospheric pressure. As a result, the water level in the cave is below the sea level. The daily variations of the sea tide provide an assessment of the cave volume above the water level in the pools. Although the cave air is confined by the rock and the seawater, there are also external air inflows during short pressurization events connected with waves that can produce and force air bubbles to flow along submarine open fissures or karst conduits inside the massif. Moreover, the effective permeability of the carbonate rocks to air at the massif scale is inferred from the cave air pressure decrease over the summer season by applying Darcy's law in a partially saturated medium. Six years of data show that permeability varies from year to year and according to the cumulative rainfalls during the spring and summer. The driest years are correlated with a higher permeability, a faster air pressure decrease in the cave, and a faster rise in the pools' water level. In the future, in the context of climate change, a perturbation of the rock permeability is then expected in the near-surface caves, which will impact airflows in decorated caves and may alter their fragile hydroclimatic stability. [ABSTRACT FROM AUTHOR]

Peatlands, constituting over half of terrestrial wetland ecosystems across the globe, hold critical ecological significance and are large stores of carbon (C). Irish oceanic raised bogs are a rare peatland ecosystem offering numerous ecosystem services, including C storage, biodiversity support and water regulation. However, they have been degraded over the centuries due to artificial drainage, followed by peat extraction, afforestation and agriculture. This has an overall negative impact on the functioning of peatlands, shifting them from a moderate C sink to a large C source. Recognizing the importance of these ecosystems, efforts are underway for conservation (rewetting and rehabilitation), while accurately accounting for C stock and greenhouse gas (GHG) emissions. However, the implementation of these efforts requires accurate identification and mapping of artificial drainage ditches. This study utilized very high‐resolution (25 cm) aerial imagery, and a deep learning (U‐Net) approach to map the visible artificial drainage (unobstructed by vegetation or infill) in raised bogs at a national scale. The results show that artificial drainage is widespread, with ~20 000 km of drains mapped. The overall accuracy of the model was 80% on an independent testing dataset. The data were also used to derive the Fracditch which was 0.03 (fraction of artificial drainage on industrial peat extraction sites). This is lower than IPCC Tier 1 Fracditch and can aid in IPCC Tier 2 reporting for Ireland. This is the first study to map drains with diverse sizes and patterns on Irish‐raised bogs using optical aerial imagery and deep learning methods. The map will serve as an important baseline dataset for evaluating the artificial drainage ditch conditions. It will prove useful for sustainable management, conservation and refined estimations of GHG emissions. The model's capacity for generalization implies its potential in mapping artificial drains in peatlands at a regional and global scale, thereby enhancing the comprehension of the global effects of artificial drainage ditches on peatlands. [ABSTRACT FROM AUTHOR]

Spiroplasma virus 4 (SpV4) is a bacteriophage of the Microviridae, which packages circular ssDNA within non-enveloped T = 1 icosahedral capsids. It infects spiroplasmas, which are known pathogens of honeybees. Here, the structure of the SpV4 virion is determined using cryo-electron microscopy to a resolution of 2.5 Å. A striking feature of the SpV4 capsid is the mushroom-like protrusions at the 3-fold axes, which is common among all members of the subfamily Gokushovirinae. While the function of the protrusion is currently unknown, this feature varies widely in this subfamily and is therefore possibly an adaptation for host recognition. Furthermore, on the interior of the SpV4 capsid, the location of DNA-binding protein VP8 was identified and shown to have low structural conservation to the capsids of other viruses in the family. The structural characterization of SpV4 will aid future studies analyzing the virus–host interaction, to understand disease mechanisms at a molecular level. Furthermore, the structural comparisons in this study, including a low-resolution structure of the chlamydia phage 2, provide an overview of the structural repertoire of the viruses in this family that infect various bacterial hosts, which in turn infect a wide range of animals and plants. [ABSTRACT FROM AUTHOR]

Disappearance of lakes is one of the most dangerous processes affecting the entire natural environment, including soil. This phenomenon is considered natural, resulting from climate change, however in recent decades, a significant acceleration of this process has been observed due to the direct impact of human activity. In areas directly adjacent to lakes, organic soils usually predominate. Unfortunately, wetlands are increasingly being drained and used for agricultural purposes. Under such circumstances, changes in the physical and chemical properties of these soils are often irreversible, causing their degradation. As an effect of increased mineralization, a number of typical modifications occur in soils, such as carbon loss, increased degree of peat decomposition, and changes in soil structure. Long-term dehydration has led to muck formation. Additionally, lowering of lake water uncovers previously flooded areas and increases the intensity of soil-forming processes. However, the presence of the Subaquatic qualifier in the World Reference Base for Soil Resources (WRB) suggests that sediments in shallow water bodies no more than 200 cm deep can also be classified as soils. The progressive disappearance of lakes observed all over the world is therefore a process affecting not only the reduction of water bodies, but also changes in the properties and typology of soils and vegetation cover. [ABSTRACT FROM AUTHOR]

Peatlands are major natural carbon pool in terrestrial ecosystems globally and are essential to a variety of fields, including global ecology, hydrology, and ecosystem services. Under the context of climate change, the management and conservation of peatlands has become a topic of international concern. Nevertheless, few studies have yet systematized the overall international dynamics of existing peatland research. In this study, based on an approach integrating bibliometrics and a literature review, we systematically analyzed peatland research from a literature perspective. Alongside traditional bibliometric analyses (e.g., number of publications, research impact, and hot areas), recent top keywords in peatland research were found, including 'oil palm', 'tropical peatland', 'permafrost', and so on. Furthermore, six hot topics of peatland research were identified: (1) peatland development and the impacts and degradations, (2) the history of peatland development and factors of formation, (3) chemical element contaminants in peatlands, (4) tropical peatlands, (5) peat adsorption and its humic acids, and (6) the influence of peatland conservation on the ecosystem. In addition, this review found that the adverse consequences of peatland degradation in the context of climate change merit greater attention, that peatland-mapping techniques suitable for all regions are lacking, that a unified global assessment of carbon stocks in peatlands urgently needs to be established, spanning all countries, and that a reliable system for assessing peatland-ecosystem services needs to be implemented expeditiously. In this study, we argued that enhanced integration in research will bridge knowledge gaps and facilitate the systematic synthesis of peatlands as complex systems, which is an imperative need. [ABSTRACT FROM AUTHOR]

The coastal temperate rainforests (CTRs) of Chilean Patagonia are a valuable forest biome on Earth given their prominent role in biogeochemical cycling and the ecological value and dynamics of surface processes. The Patagonian CTRs are amongst the most carbon-rich biomes on Earth. Together with frequent landscape disturbances, these forests potentially allow for episodic and massive release or sequestration of carbon into and from the atmosphere. We argue that, despite their particular biogeographic, geochemical, and ecological roles, the Patagonian CTRs in particular and the global CTRs in general are not adequately represented in the current catalog listing critical zone observatories (CZOs). Here, we present the Pumalín CZO as the first of its kind, located in Pumalín National Park in northern Chilean Patagonia. We consider our CZO a representative end-member of undisturbed ecosystem functioning of the Patagonian CTRs. We have identified four core research themes for the Pumalín CZO around which our activities circle in an integrative, quantitative, and generic approach using a range of emerging techniques. Our methodological blend includes an environmental seismology that also fills a critical spatiotemporal scale in terms of monitoring critical zone and surface processes with a minimum intervention in those pristine forests. We aim to gain quantitative understanding of these topics: (1) carbon sink functioning; (2) biota-driven landscape evolution; (3) water, biogeological, and energy fluxes; and (4) disturbance regime understanding. Our findings highlight the multitude of active functions that trees in particular and forests in general may have on the entire cascade of surface processes and the concomitant carbon cycling. This highlights the importance of an integrated approach, i.e., "one physical system", as proposed by Richter and Billings (2015), and accounts for the recent advances in pushing nature conservation along the Chilean coast. [ABSTRACT FROM AUTHOR]

Understanding the critical zone processes related to groundwater flows relies on subsurface structure knowledge and its associated parameters. We propose a methodology to draw the patterns of the subsurface critical zone at the catchment scale from seismic refraction data and show its interest for hydrological modelling. The designed patterns define the structure of a physically based distributed hydrological model applied to a mountainous catchment. With that goal, we acquired 10 seismic profiles covering the different geomorphology zones of the studied catchment. We develop a methodology to analyse the geostatistical characteristics of the seismic data and interpolate them over the whole catchment. The applied geostatistical model considers the scale variability of the subsurface structures observed from the seismic data analysis. We use compressional seismic wave velocity thresholds to identify the depth of the soil and saprolite bottom boundaries. Assuming that such porous compartments host the main part of the active aquifer, their patterns are embedded in a distributed hydrological model. We examine the sensitivity of classical hydrological data (piezometric heads) and geophysical data (magnetic resonance soundings) to the applied velocity thresholds used to define the soil and saprolite boundaries. Different sets of hydrogeological parameters are used in order to distinguish general trends or specificities related to the choice of parameter values. The application of the methodology to an actual catchment illustrates the interest of seismic refraction in constraining the structure of the critical zone subsurface compartments. The sensitivity tests highlight the complementarity of the analysed hydrogeophysical data sets. [ABSTRACT FROM AUTHOR]

Aim: The diversity and distribution of soil microorganisms and their potential for long‐distance dispersal (LDD) are poorly documented, making the threats posed by climate change difficult to assess. If microorganisms do not disperse globally, regional endemism may develop and extinction may occur due to environmental changes. Here, we addressed this question using the testate amoeba Apodera vas, a morphologically conspicuous model soil microorganism in microbial biogeography, commonly found in peatlands and forests mainly of former Gondwana. We first documented its distribution. We next assessed whether its distribution could be explained by dispersal (i.e. matching its climatic niche) or vicariance (i.e. palaeogeography), based on the magnitude of potential range expansions or contractions in response to past and on‐going climatic changes. Last, we wanted to assess the likelihood of cryptic diversity and its potential threat from climate and land‐use changes (e.g. due to limited LDD). Location: Documented records: Southern Hemisphere and intertropical zone; modelling: Global. Methods: We first built an updated global distribution map of A. vas using 401 validated georeferenced records. We next used these data to develop a climatic niche model to predict its past (LGM, i.e. 21 ± 3 ka BP; PMIP3 IPSL‐CM5A‐LR), present and future (IPSL‐CMP6A‐LR predictions for 2071–2100, SSP3 and 5) potential distributions in responses to climate, by relating the species occurrences to climatic and topographic predictors. We then used these predictions to test our hypotheses (dispersal/vicariance, cryptic diversity, future threat from LDD limitation). Results: Our models show that favourable climatic conditions for A. vas currently exist in the British Isles, an especially well‐studied region for testate amoebae where this species has never been found. This demonstrates a lack of interhemispheric LDD, congruent with the palaeogeography (vicariance) hypothesis. Longitudinal LDD is, however, confirmed by the presence of A. vas in isolated and geologically young peri‐Antarctic islands. Potential distribution maps for past, current and future climates show favourable climatic conditions existing on parts of all southern continents, with shifts to higher land from LGM to current in the tropics and a strong range contraction from current to future (global warming IPSL‐CM6A‐LR scenario for 2071–2100, SSP3.70 and SSP5.85) with favourable conditions developing on the Antarctic Peninsula. Main Conclusions: This study illustrates the value of climate niche models for research on microbial diversity and biogeography, along with exploring the role played by historical factors and dispersal limitation in shaping microbial biogeography. We assess the discrepancy between latitudinal and longitudinal LDD for A. vas, which is possibly due to contrast in wind patterns and/or likelihood of transport by birds. Our models also suggest that climate change may lead to regional extinction of terrestrial microscopic organisms, thus illustrating the pertinence of including microorganisms in biodiversity conservation research and actions. [ABSTRACT FROM AUTHOR]

The soil microbiome is recognized as an essential component of healthy soils. Viruses are also diverse and abundant in soils, but their roles in soil systems remain unclear. Here we argue for the consideration of viruses in soil microbial food webs and describe the impact of viruses on soil biogeochemistry. The soil food web is an intricate series of trophic levels that span from autotrophic microorganisms to plants and animals. Each soil system encompasses contrasting and dynamic physicochemical conditions, with labyrinthine habitats composed of particles. Conditions are prone to shifts in space and time, and this variability can obstruct or facilitate interactions of microorganisms and viruses. Because viruses can infect all domains of life, they must be considered as key regulators of soil food web dynamics and biogeochemical cycling. We highlight future research avenues that will enable a more robust understanding of the roles of viruses in soil function and health., (© 2024. Springer Nature Limited.)

Warming and elevated CO 2 (eCO 2 ) are expected to facilitate vascular plant encroachment in peatlands. The rhizosphere, where microbial activity is fueled by root turnover and exudates, plays a crucial role in biogeochemical cycling, and will likely at least partially dictate the response of the belowground carbon cycle to climate changes. We leveraged the Spruce and Peatland Responses Under Changing Environments (SPRUCE) experiment, to explore the effects of a whole-ecosystem warming gradient (+0°C to 9°C) and eCO 2 on vascular plant fine roots and their associated microbes. We combined trait-based approaches with the profiling of fungal and prokaryote communities in plant roots and rhizospheres, through amplicon sequencing. Warming promoted self-reliance for resource uptake in trees and shrubs, while saprophytic fungi and putative chemoorganoheterotrophic bacteria utilizing plant-derived carbon substrates were favored in the root zone. Conversely, eCO 2 promoted associations between trees and ectomycorrhizal fungi. Trees mostly associated with short-distance exploration-type fungi that preferentially use labile soil N. Additionally, eCO 2 decreased the relative abundance of saprotrophs in tree roots. Our results indicate that plant fine-root trait variation is a crucial mechanism through which vascular plants in peatlands respond to climate change via their influence on microbial communities that regulate biogeochemical cycles., (© 2024 The Authors. New Phytologist © 2024 New Phytologist Foundation.)