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Abstract Cyanobacteria are important primary producers, contributing to 25% of the global carbon fixation through photosynthesis. They serve as model organisms to study the photosynthesis, and are important cell factories for synthetic biology. To enable efficient genetic dissection and metabolic engineering in cyanobacteria, effective and accurate genetic manipulation tools are required. However, genetic manipulation in cyanobacteria by the conventional homologous recombination-based method and the recently developed CRISPR-Cas gene editing system require complicated cloning steps, especially during multi-site editing and single base mutation. This restricts the extensive research on cyanobacteria and reduces its application potential. In this study, a highly efficient and convenient cytosine base editing system was developed which allows rapid and precise C → T point mutation and gene inactivation in the genomes of Synechocystis and Anabaena. This base editing system also enables efficient multiplex editing and can be easily cured after editing by sucrose counter-selection. This work will expand the knowledge base regarding the engineering of cyanobacteria. The findings of this study will encourage the biotechnological applications of cyanobacteria.

In oligotrophic oceans, primary productivity is widely limited by nitrogen bioavailability. The broadly distributed and abundant nitrogen-fixing cyanobacterium Trichodesmium plays an important role in the oceanic nitrogen and carbon cycles by providing a “new” source of nitrogen to many non-diazotrophic microbes, thereby driving new primary production in the ocean. However, the underlying process and mechanism of nitrogen supply from Trichodesmium to other phytoplankton remain unclear. Here, our results demonstrated that the fixed nitrogen released by Trichodesmium could sustain the growth of a non-nitrogen-fixing cyanobacterium Synechococcus sp. PCC 7002, including a mutant strain (Mut-ureA) that cannot use urea. However, the growth rate of Mut-ureA was approximately 20% lower than that of the wild strain when Trichodesmium filtrate was used for nitrogen supply. This result was consistent with the composition of the Trichodesmium exudate, in which urea comprised more than 20% of the total fixed nitrogen that was released. It is evident from the experiments that a fraction of the Trichodesmium-derived nitrogen was not available to Mut-ureA. Our results suggested that Trichodesmium produces dissolved organic nitrogen, especially a certain amount of urea as a “new” nitrogen source, benefiting in particular populations of surrounding phytoplankton species.

Cyanobacteria use a series of adaptation strategies and a complicated regulatory network to maintain intracellular iron (Fe) homeostasis. Here, a global activator named IutR has been identified through three-dimensional chromosome organization and transcriptome analysis in a model cyanobacterium Synechocystis sp. PCC 6803. Inactivation of all three homologous IutR-encoding genes resulted in an impaired tolerance of Synechocystis to Fe deficiency and loss of the responses of Fe uptake-related genes to Fe-deplete conditions. Protein-promoter interaction assays confirmed the direct binding of IutR with the promoters of genes related to Fe uptake, and chromatin immunoprecipitation sequencing analysis further revealed that in addition to Fe uptake, IutR could regulate many other physiological processes involved in intracellular Fe homeostasis. These results proved that IutR is an important transcriptional activator, which is essential for cyanobacteria to induce Fe-deficiency response genes. This study provides in-depth insights into the complicated Fe-deficient signaling network and the molecular mechanism of cyanobacteria adaptation to Fe-deficient environments. [ABSTRACT FROM AUTHOR]