1. Chemical inhibition of stomatal differentiation by perturbation of the master-regulatory bHLH heterodimer via an ACT-Like domain.
- Author
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Nakagawa A, Sepuru KM, Yip SJ, Seo H, Coffin CM, Hashimoto K, Li Z, Segawa Y, Iwasaki R, Kato H, Kurihara D, Aihara Y, Kim S, Kinoshita T, Itami K, Han SK, Murakami K, and Torii KU
- Subjects
- Cell Differentiation drug effects, Protein Multimerization, Imidazoles pharmacology, Imidazoles chemistry, Imidazoles metabolism, Gene Expression Regulation, Plant, Protein Domains, Protein Binding, Molecular Docking Simulation, Basic Helix-Loop-Helix Transcription Factors metabolism, Basic Helix-Loop-Helix Transcription Factors genetics, Plant Stomata metabolism, Plant Stomata drug effects, Plant Stomata genetics, Arabidopsis metabolism, Arabidopsis genetics, Arabidopsis growth & development, Arabidopsis drug effects, Arabidopsis Proteins metabolism, Arabidopsis Proteins genetics, Arabidopsis Proteins chemistry
- Abstract
Selective perturbation of protein interactions with chemical compounds enables dissection and control of developmental processes. Differentiation of stomata, cellular valves vital for plant growth and survival, is specified by the basic-helix-loop-helix (bHLH) heterodimers. Harnessing a new amination reaction, we here report a synthesis, derivatization, target identification, and mode of action of an atypical doubly-sulfonylated imidazolone, Stomidazolone, which triggers stomatal stem cell arrest. Our forward chemical genetics followed by biophysical analyses elucidates that Stomidazolone directly binds to the C-terminal ACT-Like (ACTL) domain of MUTE, a master regulator of stomatal differentiation, and perturbs its heterodimerization with a partner bHLH, SCREAM in vitro and in plant cells. On the other hand, Stomidazolone analogs that are biologically inactive do not bind to MUTE or disrupt the SCREAM-MUTE heterodimers. Guided by structural docking modeling, we rationally design MUTE with reduced Stomidazolone binding. These engineered MUTE proteins are fully functional and confer Stomidazolone resistance in vivo. Our study identifies doubly-sulfonylated imidazolone as a direct inhibitor of the stomatal master regulator, further expanding the chemical space for perturbing bHLH-ACTL proteins to manipulate plant development., (© 2024. The Author(s).)
- Published
- 2024
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