15 results on '"Kubes, P."'
Search Results
2. Ferric oxide nano-priming enhances photosynthetic and physicochemical properties of sunflower (Helianthus annuus L.) microgreens
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Aayushi Gupta, Rohit Bharati, Jan Kubes, Pavla Vachova, Daniela Popelkova, Lovely Mahawar, Marek Zivcak, Xinghong Yang, and Marian Brestic (ORCID: 0000-0003
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seed priming ,antioxidant ,fluorescence activity ,nutrients ,Plant culture ,SB1-1110 - Abstract
In modern agriculture, nano-priming represents an innovative approach, harnessing the power of nanotechnology to enhance crop yields and nutrition. However, to effectively harness the potential of nanoparticles (NPs) for agriculture applications, understanding their mode of action and optimal application rates for positive effects on microgreen growth and physiology is critical. In this interdisciplinary study, we investigated the priming of sunflower seeds with a range of concentrations (25, 50, and 100 mg/L) of ferric oxide (Fe2O3) nanoparticles (FeNPs) and compared them with control samples. Our findings revealed a significant increase in plant biomass, leaf size, and photosynthetic activity in treated samples. The activities of photosystems I and II increased with higher FeNPs concentration. The treated samples exhibited elevated levels of total phenolics, anthocyanin, and antioxidant enzyme activity, along with increased macronutrients and micronutrients. These findings highlight the potential of FeNPs as a promising tool for enhancing plant growth and physiology in sunflower microgreens.
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- 2024
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3. Zinc oxide nanoparticles application alleviates salinity stress by modulating plant growth, biochemical attributes and nutrient homeostasis in Phaseolus vulgaris L
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Aayushi Gupta, Rohit Bharati, Jan Kubes, Daniela Popelkova, Lukas Praus, Xinghong Yang, Lucie Severova, Milan Skalicky, and Marian Brestic
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beans ,foliar spray ,nano priming ,salinity stress ,soil application ,ZnO nanoparticles ,Plant culture ,SB1-1110 - Abstract
Salt stress poses a significant challenge to global agriculture, adversely affecting crop yield and food production. The current study investigates the potential of Zinc Oxide (ZnO) nanoparticles (NPs) in mitigating salt stress in common beans. Salt-stressed bean plants were treated with varying concentrations of NPs (25 mg/L, 50 mg/L, 100 mg/L, 200 mg/L) using three different application methods: foliar application, nano priming, and soil application. Results indicated a pronounced impact of salinity stress on bean plants, evidenced by a reduction in fresh weight (24%), relative water content (27%), plant height (33%), chlorophyll content (37%), increased proline (over 100%), sodium accumulation, and antioxidant enzyme activity. Application of ZnO NPs reduced salt stress by promoting physiological growth parameters. The NPs facilitated enhanced plant growth and reduced reactive oxygen species (ROS) generation by regulating plant nutrient homeostasis and chlorophyll fluorescence activity. All the tested application methods effectively mitigate salt stress, with nano-priming emerging as the most effective approach, yielding results comparable to control plants for the tested parameters. This study provides the first evidence that ZnO NPs can effectively mitigate salt stress in bean plants, highlighting their potential to address salinity-induced growth inhibition in crops.
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- 2024
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4. Moving Beyond the Reflex: Effect of a Clinical Decision Support Tool on Urine Culture Ordering Practices
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Elizabeth Kim, Julianne Kubes, Shanza Ashraf, Krystle Johnson, Lisa Reif, Kathryn Garcia, Jesse Jacob, and Jessica Howard-Anderson
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Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Interventions targeting urine culture stewardship can improve diagnostic accuracy for urinary tract infections (UTI) and decrease inappropriate antibiotic treatment of asymptomatic bacteriuria. We aimed to determine if a clinical decision support (CDS) tool which provided guidance on and required documentation of the indications would decrease inappropriately ordered urine cultures in an academic healthcare network that already uses conditional (e.g. reflex) urine testing. Methods: In October 2022, four hospitals within one academic healthcare network transitioned to a new electronic health record (EHR). We developed an embedded CDS tool that provided guidance on ordering either a urinalysis (UA) with reflex to urine culture or a non-reflex urine culture (e.g. for pregnant patients) based on the indication for testing (Figure 1). We compared median monthly UA with reflex culture and non-reflex urine culture order rates pre- (8/2017–9/2022) and post- (10/2022–9/2023) intervention using the Wilcoxon rank-sum test. We used interrupted time-series analyses allowing a one-month time window for the intervention effect to assess changes in monthly UA with reflex culture, non-reflex urine culture, and total urine culture order rates associated with the intervention. Using SAS 9.4, we generated Durbin-Watson statistics to assess for autocorrelation and adjusted for this using a stepwise autoregressive model. Result: The median monthly UA with reflex culture order rates per 1000 patient-days were similar pre- and post- intervention at 36.7 (interquartile range [IQR]: 31.0–39.7) and 35.4 (IQR: 32.8–37.0), respectively (Figure 2). Non-reflex and total urine culture rates per 1000 patient-days decreased from 8.5 (IQR: 8.1–9.1) to 4.9 (IQR: 4.7–5.1) and from 20.0 (IQR: 18.9–20.7) to 14.4 (IQR: 14.0–14.6) post-intervention, respectively. Interrupted time-series analyses revealed that the intervention was associated with a decrease in the monthly non-reflex urine culture by 4.8 cultures/1000 patient-days (p< 0.001) and in the total urine culture monthly order rates by 5.0 cultures/ 1000 patient-days (p < 0 .001) [Figures 3a and b]. The UA with reflex order rate did not significantly change with the intervention (not pictured). Conclusion: In an academic healthcare network that already employed conditional urine testing, the implementation of an EHR-based diagnostic stewardship tool led to additional decreases in both non-reflex and total urine cultures ordered.
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- 2024
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5. Contributing Factors to Central Line-associated Bloodstream Infections and Catheter-associated Urinary Tract Infections
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Jessica Howard-Anderson, Lindsey Gottlieb, Lori Grooms, Carolyn Holder, Lisa Reif, Krystle Johnson, Victoria Dotto, Julianne Kubes, Kari Love, Rachel Regina, David Murphy, Jesse Jacob, Colleen Kraft, and Joel Mumma
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Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Central line-associated bloodstream infections (CLABSI) and catheter-associated urinary tract infections (CAUTI) are key healthcare-associated infection (HAI) quality metrics. In this qualitative analysis, we aimed to identify common issues contributing to CLABSIs and CAUTIs occurring during the COVID-19 pandemic. Methods: In an academic healthcare network in Atlanta, GA, four hospitals perform real-time, apparent cause analyses (ACAs) for all CLABSIs and CAUTIs. Contributing factors are entered as free text into an electronic database. We analyzed data from 8/2020–8/2022. We first performed a qualitative open card sort of all reported contributing factors to CLABSI and created a novel framework based on mutually defined critical tasks (e.g., line insertion) and cross-cutting issues (e.g., communication breakdown). Contributing factors could describe ≥1 critical task and/or ≥1 cross-cutting issue. After establishing interrater reliability, a multidisciplinary group applied this framework to classify each contributing factor. For CAUTI, we used the same set of cross-cutting issues but identified new critical tasks via open card sorting. We then used the framework to classify each CAUTI contributing factor. We used descriptive statistics to identify frequent critical tasks and cross-cutting issues. Results: We reviewed 350 CLABSI ACAs with 602 contributing factors and 240 CAUTI ACAs with 405 contributing factors (Figure 1). Our classification framework comprised 11 cross-cutting issues and 9 critical tasks for CLABSI and 7 critical tasks for CAUTI (Figure 2). CLABSI: The critical tasks most often reported were bathing (19%), central line dressing maintenance (15%), and assessing central line indication (8%; Figure 3). Within these tasks, the most frequent issues described for bathing were the task not being performed (20%) and unclear documentation (18%); for dressing maintenance, the task was not performed (15%), not documented (15%), or poorly performed due to lack of competency (15%); and for assessing line indication, there was frequent communication breakdown (33%). CAUTI: The critical tasks most often reported were urinary catheter care (26%) and assessing the indication for urinary catheter (22%; Figure 4). Within these tasks, urinary catheter care was frequently not documented (38%) or not performed (16%); assessing urinary catheter necessity was often not documented (29%) or involved breakdown of communication (19%). Conclusion: We created a novel framework to evaluate common causes of HAIs in an academic healthcare network. This framework can be used to identify and track gaps over time and to develop quality improvement initiatives targeting key tasks and associated factors, such as communication difficulties when assessing device indications.
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- 2024
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6. Mehr Professuren für Gender-MINT! Bestandsaufnahme, Perspektiven und Forderungen von Professor*innen in MINT-Gender Studies in Deutschland
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Tanja Kubes
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gender studies ,mint ,fachkulturforschung ,hochschulpolitik ,wissenschaftsforschung ,The family. Marriage. Woman ,HQ1-2044 - Abstract
Um den technologischen und gesellschaftlichen Herausforderungen der Gegenwart gerecht zu werden, bedürfen die MINT-Disziplinen dringend eines kritisch-reflexiven, diversitätssensiblen Korrektivs. Die vorliegende qualitative Studie liefert eine umfassende Bestandsaufnahme des Ist-Zustandes im Bereich Gender Studies in MINT und schlägt Maßnahmen für eine nachhaltige Integration von gender- und diversitätsrelevanten Inhalten in den MINT-Disziplinen vor. Sie identifiziert drei Desiderata: eine bessere Verankerung und Akzeptanz der Geschlechterforschung in MINT auf institutioneller Ebene, einen Stellenausbau für Professuren mit der Denomination Gender Studies in MINT und die Eröffnung langfristiger Perspektiven für Stelleninhaber*innen in diesem Bereich.
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- 2024
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7. Derivation of a risk-adjusted model to predict antibiotic prescribing among hospitalists in an academic healthcare network
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Udodirim N. Onwubiko, Christina Mehta, Zanthia Wiley, Jesse T. Jacob, K. Ashley Jones, Julianne Kubes, Hasan F. Shabbir, Sujit Suchindran, and Scott K. Fridkin
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Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background: Among inpatients, peer-comparison of prescribing metrics is challenging due to variation in patient-mix and prescribing by multiple providers daily. We established risk-adjusted provider-specific antibiotic prescribing metrics to allow peer-comparisons among hospitalists. Methods: Using clinical and billing data from inpatient encounters discharged from the Hospital Medicine Service between January 2020 through June 2021 at four acute care hospitals, we calculated bimonthly (every two months) days of therapy (DOT) for antibiotics attributed to specific providers based on patient billing dates. Ten patient-mix characteristics, including demographics, infectious disease diagnoses, and noninfectious comorbidities were considered as potential predictors of antibiotic prescribing. Using linear mixed models, we identified risk-adjusted models predicting the prescribing of three antibiotic groups: broad spectrum hospital-onset (BSHO), broad-spectrum community-acquired (BSCA), and anti-methicillin-resistant Staphylococcus aureus (Anti-MRSA) antibiotics. Provider-specific observed-to-expected ratios (OERs) were calculated to describe provider-level antibiotic prescribing trends over time. Results: Predictors of antibiotic prescribing varied for the three antibiotic groups across the four hospitals, commonly selected predictors included sepsis, COVID-19, pneumonia, urinary tract infection, malignancy, and age >65 years. OERs varied within each hospital, with medians of approximately 1 and a 75th percentile of approximately 1.25. The median OER demonstrated a downward trend for the Anti-MRSA group at two hospitals but remained relatively stable elsewhere. Instances of heightened antibiotic prescribing (OER >1.25) were identified in approximately 25% of the observed time-points across all four hospitals. Conclusion: Our findings indicate provider-specific benchmarking among inpatient providers is achievable and has potential utility as a valuable tool for inpatient stewardship efforts.
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- 2024
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8. Evolution of filament-like compact structures in small 3 kJ dense plasma focus discharges.
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Kubes, P., Marciniak, L., Sadowski, M. J., Paduch, M., Cikhardtova, B., Cikhardt, J., Kravarik, J., Malir, J., Munzar, V., Novotný, J., and Rezac, K.
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PLASMA focus , *DENSE plasmas , *PLASMA flow , *ELECTRIC currents , *PLASMA devices - Abstract
This paper presents the filamentary structure of the pinched column in a smaller plasma focus device filled with deuterium. The deflections were observed using schlieren and differential interferometry techniques. The observed filaments have a transverse diameter of 40–200 μm, which could be interpreted based on the electric current hypothesis as local concentrations of electric current. The evolution of filaments was compared with global structures recorded by extra ultraviolet frames. These results provide a basis for considering the possibility of a filamentary composition of the poloidal current in compact structures. The model of filaments with a helical shape of electrical current may be able to explain the central narrow and dense cord in the axis of the column, the different lifetimes of the structures, and the submillimeter sources of fast electrons and ions. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Comparison of density profiles measured via laser interferometry with MHD simulations during shock wave reflection on mega-ampere dense plasma focus.
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Malir, J., Klir, D., Cikhardt, J., Cikhardtova, B., Kravarik, J., Kubes, P., Munzar, V., Novotny, J., Rezac, K., and Paduch, M.
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PLASMA focus ,SHOCK waves ,DENSE plasmas ,LASER interferometry ,DENSITY ,PHENOMENOLOGICAL theory (Physics) - Abstract
The analysis of Z-pinch implosion dynamics plays one of the most important roles in the study of pulsed power discharges. At the same time, it is difficult to determine the density distribution together with the current density (current coupling to the imploding layer) to provide more detailed information about the dynamics. Numerical simulations can now provide high-resolution results that are almost unattainable in experiments. The challenge, however, is to obtain reliable results that are close enough to the experimental data to describe individual physical phenomena. In this paper, we show that it is possible to use a combination of experimental data and magnetohydrodynamic (MHD) simulations to verify and identify the physical processes during the stagnation of a Z-pinch. We focus on the analysis of the density profile from experimental data of the mega-ampere plasma focus PF-1000 and its reconstruction using an extended MHD code. Thanks to multi-frame interferometry, we recorded a total of 29 interferometric images of two shots, each in a 200 ns time window around the pinch phase. We were then able to obtain density profiles and observe the reflection of the shock wave from the axis. By the appropriate choice of initial conditions and boundary values in the simulation, we were able to obtain reasonable agreement with the experimental values. We also evaluated the possible shortcomings of the 1D simulation, such as mass loss and current flow at the periphery. [ABSTRACT FROM AUTHOR]
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- 2024
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10. Varied roles for LGR6 in the immune response
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Siwicki, Marie R. and Kubes, Paul
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- 2024
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11. QAPI 146 - No Catheter, No CAUTI! Implementing Leadership Rounds to Decrease Device Utilization and CAUTI Rates in a 500-bed Acute Care Hospital.
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Gretzinger, Siyeh, Holdsworth, Jill E., McKee-Waddle, Rebecca, Bond, Cynthia, Neal, Kali, Kubes, Julianne, Jacob, Jesse, and Howard-Anderson, Jessica
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- 2024
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12. Qualitative analysis of key contributing factors to central line–associated bloodstream infections (CLABSIs) in an academic healthcare system, 2020–2022
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Howard-Anderson, J, Gottlieb, L, Grooms, L, Holder, C, Dotto, V, Kubes, J, Love, K, Regina, R, Murphy, D, Jacob, J, Kraft, CS, and Mumma, J
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- 2024
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13. Knowing when to stop: MICL self-regulates neutrophil NETosis
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Shim, Hanjoo Brian, Deniset, Justin François, and Kubes, Paul
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- 2024
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14. Kupffer cell reverse migration into the liver sinusoids mitigates neonatal sepsis and meningitis.
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Araujo David B, Atif J, Vargas E Silva Castanheira F, Yasmin T, Guillot A, Ait Ahmed Y, Peiseler M, Hommes JW, Salm L, Brundler MA, Surewaard BGJ, Elhenawy W, MacParland S, Ginhoux F, McCoy K, and Kubes P
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- Animals, Mice, Female, Histocompatibility Antigens Class II immunology, Hyaluronan Receptors metabolism, Hyaluronan Receptors immunology, Hyaluronan Receptors genetics, Macrophage Migration-Inhibitory Factors immunology, Macrophage Migration-Inhibitory Factors genetics, Antigens, Differentiation, B-Lymphocyte immunology, Antigens, Differentiation, B-Lymphocyte genetics, Kupffer Cells immunology, Liver immunology, Liver pathology, Cell Movement immunology, Animals, Newborn, Neonatal Sepsis immunology, Neonatal Sepsis microbiology, Mice, Inbred C57BL
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In adults, liver-resident macrophages, or Kupffer cells (KCs), reside in the sinusoids and sterilize circulating blood by capturing rapidly flowing microbes. We developed quantitative intravital imaging of 1-day-old mice combined with transcriptomics, genetic manipulation, and in vivo infection assays to interrogate increased susceptibility of newborns to bloodstream infections. Whereas 1-day-old KCs were better at catching Escherichia coli in vitro, we uncovered a critical 1-week window postpartum when KCs have limited access to blood and must translocate from liver parenchyma into the sinusoids. KC migration was independent of the microbiome but depended on macrophage migration inhibitory factor, its receptor CD74, and the adhesion molecule CD44. On the basis of our findings, we propose a model of progenitor macrophage seeding of the liver sinusoids via a reverse transmigration process from liver parenchyma. These results also illustrate the importance of developing newborn mouse models to understand newborn immunity and disease.
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- 2024
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15. A Functional Assessment of Fetal Liver and Monocyte-Derived Macrophages in the Lung Alveolar Environment.
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Zhang WX, Neupane AS, David BA, Ginhoux F, Vargas E Silva Castanheira F, and Kubes P
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- Animals, Dogs, Mice, Lung, Macrophages, Macrophages, Alveolar, Phagocytosis, Liver, Influenza A virus, Coinfection
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It is becoming clear that every organ is seeded by a population of fetal liver-derived macrophages that are replaced at different rates by monocyte-derived macrophages. Using the Ms4a3tdTomato reporter mouse that reports on monocyte-derived alveolar macrophages (Mo-AMs) and our ability to examine AM function using our multichannel intravital microscopy, we examined the fetal-liver derived alveolar macrophage (FL-AM) and Mo-AM populations within the same mouse under various environmental conditions. The experiments unveiled that AMs migrated from alveolus to alveolus and phagocytosed bacteria identically regardless of ontogenic origin. Using 50 PFU of influenza A virus (IAV) determined using the Madin-Darby canine kidney (MDCK) cell line, we noted that both populations were susceptible to IAV-induced immunoparalysis, which also led to impaired phagocytosis of secondary bacterial infections. Both FL-AMs and Mo-AMs were trained by β-glucan to resist IAV-induced paralysis. Over time (40 wk), Mo-AMs began to outperform FL-AMs, although both populations were still sensitive to IAV. Our data also show that clodronate depletion of AMs leads to replenishment, but by FL-AMs, and these macrophages do show some functional impairment for a limited time. Overall, the system is designed such that new macrophages rapidly assume the function of tissue-resident macrophages when both populations are examined in an identical environment. These data do differ from artificial depletion methods that compare Mo-AMs and FL-AMs., (Copyright © 2024 by The American Association of Immunologists, Inc.)
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- 2024
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