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Modelling partial differential equations (PDEs) is of crucial importance in science and engineering, and it includes tasks ranging from forecasting to inverse problems, such as data assimilation. However, most previous numerical and machine learning approaches that target forecasting cannot be applied out-of-the-box for data assimilation. Recently, diffusion models have emerged as a powerful tool for conditional generation, being able to flexibly incorporate observations without retraining. In this work, we perform a comparative study of score-based diffusion models for forecasting and assimilation of sparse observations. In particular, we focus on diffusion models that are either trained in a conditional manner, or conditioned after unconditional training. We address the shortcomings of existing models by proposing 1) an autoregressive sampling approach that significantly improves performance in forecasting, 2) a new training strategy for conditional score-based models that achieves stable performance over a range of history lengths, and 3) a hybrid model which employs flexible pre-training conditioning on initial conditions and flexible post-training conditioning to handle data assimilation. We empirically show that these modifications are crucial for successfully tackling the combination of forecasting and data assimilation, a task commonly encountered in real-world scenarios., Comment: Accepted at NeurIPS 2024

Many important problems require modelling large-scale spatio-temporal datasets, with one prevalent example being weather forecasting. Recently, transformer-based approaches have shown great promise in a range of weather forecasting problems. However, these have mostly focused on gridded data sources, neglecting the wealth of unstructured, off-the-grid data from observational measurements such as those at weather stations. A promising family of models suitable for such tasks are neural processes (NPs), notably the family of transformer neural processes (TNPs). Although TNPs have shown promise on small spatio-temporal datasets, they are unable to scale to the quantities of data used by state-of-the-art weather and climate models. This limitation stems from their lack of efficient attention mechanisms. We address this shortcoming through the introduction of gridded pseudo-token TNPs which employ specialised encoders and decoders to handle unstructured observations and utilise a processor containing gridded pseudo-tokens that leverage efficient attention mechanisms. Our method consistently outperforms a range of strong baselines on various synthetic and real-world regression tasks involving large-scale data, while maintaining competitive computational efficiency. The real-life experiments are performed on weather data, demonstrating the potential of our approach to bring performance and computational benefits when applied at scale in a weather modelling pipeline.

When training transformers on graph-structured data, incorporating information about the underlying topology is crucial for good performance. Topological masking, a type of relative position encoding, achieves this by upweighting or downweighting attention depending on the relationship between the query and keys in a graph. In this paper, we propose to parameterise topological masks as a learnable function of a weighted adjacency matrix -- a novel, flexible approach which incorporates a strong structural inductive bias. By approximating this mask with graph random features (for which we prove the first known concentration bounds), we show how this can be made fully compatible with linear attention, preserving $\mathcal{O}(N)$ time and space complexity with respect to the number of input tokens. The fastest previous alternative was $\mathcal{O}(N \log N)$ and only suitable for specific graphs. Our efficient masking algorithms provide strong performance gains for tasks on image and point cloud data, including with $>30$k nodes.

Mitigating methane emissions is the fastest way to stop global warming in the short-term and buy humanity time to decarbonise. Despite the demonstrated ability of remote sensing instruments to detect methane plumes, no system has been available to routinely monitor and act on these events. We present MARS-S2L, an automated AI-driven methane emitter monitoring system for Sentinel-2 and Landsat satellite imagery deployed operationally at the United Nations Environment Programme's International Methane Emissions Observatory. We compile a global dataset of thousands of super-emission events for training and evaluation, demonstrating that MARS-S2L can skillfully monitor emissions in a diverse range of regions globally, providing a 216% improvement in mean average precision over a current state-of-the-art detection method. Running this system operationally for six months has yielded 457 near-real-time detections in 22 different countries of which 62 have already been used to provide formal notifications to governments and stakeholders.

Vision language models (VLMs) demonstrate impressive capabilities in visual question answering and image captioning, acting as a crucial link between visual and language models. However, existing open-source VLMs heavily rely on pretrained and frozen vision encoders (such as CLIP). Despite CLIP's robustness across diverse domains, it still exhibits non-negligible image understanding errors. These errors propagate to the VLM responses, resulting in sub-optimal performance. In our work, we propose an efficient and robust method for updating vision encoders within VLMs. Our approach selectively and locally updates encoders, leading to substantial performance improvements on data where previous mistakes occurred, while maintaining overall robustness. Furthermore, we demonstrate the effectiveness of our method during continual few-shot updates. Theoretical grounding, generality, and computational efficiency characterize our approach.

Neural processes (NPs) are a powerful family of meta-learning models that seek to approximate the posterior predictive map of the ground-truth stochastic process from which each dataset in a meta-dataset is sampled. There are many cases in which practitioners, besides having access to the dataset of interest, may also have access to other datasets that share similarities with it. In this case, integrating these datasets into the NP can improve predictions. We equip NPs with this functionality and describe this paradigm as in-context in-context learning. Standard NP architectures, such as the convolutional conditional NP (ConvCNP) or the family of transformer neural processes (TNPs), are not capable of in-context in-context learning, as they are only able to condition on a single dataset. We address this shortcoming by developing the in-context in-context learning pseudo-token TNP (ICICL-TNP). The ICICL-TNP builds on the family of PT-TNPs, which utilise pseudo-token-based transformer architectures to sidestep the quadratic computational complexity associated with regular transformer architectures. Importantly, the ICICL-TNP is capable of conditioning on both sets of datapoints and sets of datasets, enabling it to perform in-context in-context learning. We demonstrate the importance of in-context in-context learning and the effectiveness of the ICICL-TNP in a number of experiments.

Equivariant deep learning architectures exploit symmetries in learning problems to improve the sample efficiency of neural-network-based models and their ability to generalise. However, when modelling real-world data, learning problems are often not exactly equivariant, but only approximately. For example, when estimating the global temperature field from weather station observations, local topographical features like mountains break translation equivariance. In these scenarios, it is desirable to construct architectures that can flexibly depart from exact equivariance in a data-driven way. In this paper, we develop a general approach to achieving this using existing equivariant architectures. Our approach is agnostic to both the choice of symmetry group and model architecture, making it widely applicable. We consider the use of approximately equivariant architectures in neural processes (NPs), a popular family of meta-learning models. We demonstrate the effectiveness of our approach on a number of synthetic and real-world regression experiments, demonstrating that approximately equivariant NP models can outperform both their non-equivariant and strictly equivariant counterparts.

The effectiveness of neural processes (NPs) in modelling posterior prediction maps -- the mapping from data to posterior predictive distributions -- has significantly improved since their inception. This improvement can be attributed to two principal factors: (1) advancements in the architecture of permutation invariant set functions, which are intrinsic to all NPs; and (2) leveraging symmetries present in the true posterior predictive map, which are problem dependent. Transformers are a notable development in permutation invariant set functions, and their utility within NPs has been demonstrated through the family of models we refer to as TNPs. Despite significant interest in TNPs, little attention has been given to incorporating symmetries. Notably, the posterior prediction maps for data that are stationary -- a common assumption in spatio-temporal modelling -- exhibit translation equivariance. In this paper, we introduce of a new family of translation equivariant TNPs that incorporate translation equivariance. Through an extensive range of experiments on synthetic and real-world spatio-temporal data, we demonstrate the effectiveness of TE-TNPs relative to their non-translation-equivariant counterparts and other NP baselines.

The need for regression models to predict circular values arises in many scientific fields. In this work we explore a family of expressive and interpretable distributions over circle-valued random functions related to Gaussian processes targeting two Euclidean dimensions conditioned on the unit circle. The resulting probability model has connections with continuous spin models in statistical physics. Moreover, its density is very simple and has maximum-entropy, unlike previous Gaussian process-based approaches, which use wrapping or radial marginalization. For posterior inference, we introduce a new Stratonovich-like augmentation that lends itself to fast Markov Chain Monte Carlo sampling. We argue that transductive learning in these models favors a Bayesian approach to the parameters. We present experiments applying this model to the prediction of (i) wind directions and (ii) the percentage of the running gait cycle as a function of joint angles., Comment: Contribution to the Structured Probabilistic Inference & Generative Modeling workshop of ICML 2024

Many high-stakes applications require machine learning models that protect user privacy and provide well-calibrated, accurate predictions. While Differential Privacy (DP) is the gold standard for protecting user privacy, standard DP mechanisms typically significantly impair performance. One approach to mitigating this issue is pre-training models on simulated data before DP learning on the private data. In this work we go a step further, using simulated data to train a meta-learning model that combines the Convolutional Conditional Neural Process (ConvCNP) with an improved functional DP mechanism of Hall et al. [2013] yielding the DPConvCNP. DPConvCNP learns from simulated data how to map private data to a DP predictive model in one forward pass, and then provides accurate, well-calibrated predictions. We compare DPConvCNP with a DP Gaussian Process (GP) baseline with carefully tuned hyperparameters. The DPConvCNP outperforms the GP baseline, especially on non-Gaussian data, yet is much faster at test time and requires less tuning.

Expectation propagation (EP) is a family of algorithms for performing approximate inference in probabilistic models. The updates of EP involve the evaluation of moments -- expectations of certain functions -- which can be estimated from Monte Carlo (MC) samples. However, the updates are not robust to MC noise when performed naively, and various prior works have attempted to address this issue in different ways. In this work, we provide a novel perspective on the moment-matching updates of EP; namely, that they perform natural-gradient-based optimisation of a variational objective. We use this insight to motivate two new EP variants, with updates that are particularly well-suited to MC estimation; they remain stable and are most sample-efficient when estimated with just a single sample. These new variants combine the benefits of their predecessors and address key weaknesses. In particular, they are easier to tune, offer an improved speed-accuracy trade-off, and do not rely on the use of debiasing estimators. We demonstrate their efficacy on a variety of probabilistic inference tasks.

Random features (RFs) are a popular technique to scale up kernel methods in machine learning, replacing exact kernel evaluations with stochastic Monte Carlo estimates. They underpin models as diverse as efficient transformers (by approximating attention) to sparse spectrum Gaussian processes (by approximating the covariance function). Efficiency can be further improved by speeding up the convergence of these estimates: a variance reduction problem. We tackle this through the unifying lens of optimal transport, finding couplings to improve RFs defined on both Euclidean and discrete input spaces. They enjoy theoretical guarantees and sometimes provide strong downstream gains, including for scalable approximate inference on graphs. We reach surprising conclusions about the benefits and limitations of variance reduction as a paradigm, showing that other properties of the coupling should be optimised for attention estimation in efficient transformers.

Machine learning practitioners often face significant challenges in formally integrating their prior knowledge and beliefs into predictive models, limiting the potential for nuanced and context-aware analyses. Moreover, the expertise needed to integrate this prior knowledge into probabilistic modeling typically limits the application of these models to specialists. Our goal is to build a regression model that can process numerical data and make probabilistic predictions at arbitrary locations, guided by natural language text which describes a user's prior knowledge. Large Language Models (LLMs) provide a useful starting point for designing such a tool since they 1) provide an interface where users can incorporate expert insights in natural language and 2) provide an opportunity for leveraging latent problem-relevant knowledge encoded in LLMs that users may not have themselves. We start by exploring strategies for eliciting explicit, coherent numerical predictive distributions from LLMs. We examine these joint predictive distributions, which we call LLM Processes, over arbitrarily-many quantities in settings such as forecasting, multi-dimensional regression, black-box optimization, and image modeling. We investigate the practical details of prompting to elicit coherent predictive distributions, and demonstrate their effectiveness at regression. Finally, we demonstrate the ability to usefully incorporate text into numerical predictions, improving predictive performance and giving quantitative structure that reflects qualitative descriptions. This lets us begin to explore the rich, grounded hypothesis space that LLMs implicitly encode.

Deep learning foundation models are revolutionizing many facets of science by leveraging vast amounts of data to learn general-purpose representations that can be adapted to tackle diverse downstream tasks. Foundation models hold the promise to also transform our ability to model our planet and its subsystems by exploiting the vast expanse of Earth system data. Here we introduce Aurora, a large-scale foundation model of the atmosphere trained on over a million hours of diverse weather and climate data. Aurora leverages the strengths of the foundation modelling approach to produce operational forecasts for a wide variety of atmospheric prediction problems, including those with limited training data, heterogeneous variables, and extreme events. In under a minute, Aurora produces 5-day global air pollution predictions and 10-day high-resolution weather forecasts that outperform state-of-the-art classical simulation tools and the best specialized deep learning models. Taken together, these results indicate that foundation models can transform environmental forecasting.

Weather forecasting is critical for a range of human activities including transportation, agriculture, industry, as well as the safety of the general public. Machine learning models have the potential to transform the complex weather prediction pipeline, but current approaches still rely on numerical weather prediction (NWP) systems, limiting forecast speed and accuracy. Here we demonstrate that a machine learning model can replace the entire operational NWP pipeline. Aardvark Weather, an end-to-end data-driven weather prediction system, ingests raw observations and outputs global gridded forecasts and local station forecasts. Further, it can be optimised end-to-end to maximise performance over quantities of interest. Global forecasts outperform an operational NWP baseline for multiple variables and lead times. Local station forecasts are skillful up to ten days lead time and achieve comparable and often lower errors than a post-processed global NWP baseline and a state-of-the-art end-to-end forecasting system with input from human forecasters. These forecasts are produced with a remarkably simple neural process model using just 8% of the input data and three orders of magnitude less compute than existing NWP and hybrid AI-NWP methods. We anticipate that Aardvark Weather will be the starting point for a new generation of end-to-end machine learning models for medium-range forecasting that will reduce computational costs by orders of magnitude and enable the rapid and cheap creation of bespoke models for users in a variety of fields, including for the developing world where state-of-the-art local models are not currently available.

Correctly capturing the symmetry transformations of data can lead to efficient models with strong generalization capabilities, though methods incorporating symmetries often require prior knowledge. While recent advancements have been made in learning those symmetries directly from the dataset, most of this work has focused on the discriminative setting. In this paper, we take inspiration from group theoretic ideas to construct a generative model that explicitly aims to capture the data's approximate symmetries. This results in a model that, given a prespecified broad set of possible symmetries, learns to what extent, if at all, those symmetries are actually present. Our model can be seen as a generative process for data augmentation. We provide a simple algorithm for learning our generative model and empirically demonstrate its ability to capture symmetries under affine and color transformations, in an interpretable way. Combining our symmetry model with standard generative models results in higher marginal test-log-likelihoods and improved data efficiency.

We present a transformer decoder based sports simulation engine, SportsNGEN, trained on sports player and ball tracking sequences, that is capable of generating sustained gameplay and accurately mimicking the decision making of real players. By training on a large database of professional tennis tracking data, we demonstrate that simulations produced by SportsNGEN can be used to predict the outcomes of rallies, determine the best shot choices at any point, and evaluate counterfactual or what if scenarios to inform coaching decisions and elevate broadcast coverage. By combining the generated simulations with a shot classifier and logic to start and end rallies, the system is capable of simulating an entire tennis match. We evaluate SportsNGEN by comparing statistics of the simulations with those of real matches between the same players. We show that the model output sampling parameters are crucial to simulation realism and that SportsNGEN is probabilistically well-calibrated to real data. In addition, a generic version of SportsNGEN can be customized to a specific player by fine-tuning on the subset of match data that includes that player. Finally, we show qualitative results indicating the same approach works for football.

Denoising Diffusion Probabilistic Models (DDPMs) are a very popular class of deep generative model that have been successfully applied to a diverse range of problems including image and video generation, protein and material synthesis, weather forecasting, and neural surrogates of partial differential equations. Despite their ubiquity it is hard to find an introduction to DDPMs which is simple, comprehensive, clean and clear. The compact explanations necessary in research papers are not able to elucidate all of the different design steps taken to formulate the DDPM and the rationale of the steps that are presented is often omitted to save space. Moreover, the expositions are typically presented from the variational lower bound perspective which is unnecessary and arguably harmful as it obfuscates why the method is working and suggests generalisations that do not perform well in practice. On the other hand, perspectives that take the continuous time-limit are beautiful and general, but they have a high barrier-to-entry as they require background knowledge of stochastic differential equations and probability flow. In this note, we distill down the formulation of the DDPM into six simple steps each of which comes with a clear rationale. We assume that the reader is familiar with fundamental topics in machine learning including basic probabilistic modelling, Gaussian distributions, maximum likelihood estimation, and deep learning.

Adaptive gradient optimizers like Adam(W) are the default training algorithms for many deep learning architectures, such as transformers. Their diagonal preconditioner is based on the gradient outer product which is incorporated into the parameter update via a square root. While these methods are often motivated as approximate second-order methods, the square root represents a fundamental difference. In this work, we investigate how the behavior of adaptive methods changes when we remove the root, i.e., strengthen their second-order motivation. Surprisingly, we find that such square-root-free adaptive methods close the generalization gap to SGD on convolutional architectures, while maintaining their root-based counterpart's performance on transformers. The second-order perspective also has practical benefits for developing non-diagonal methods that can incorporate arbitrary curvature approximations through the concept of preconditioner invariance. In contrast to root-based methods like Shampoo, root-free counterparts work well and fast with half-precision since they do not require numerically unstable matrix root decompositions and inversions. Overall, our findings provide new insights into the development of adaptive methods and raise important questions regarding the overlooked role of adaptivity in their success. (experiment code: https://github.com/yorkerlin/remove-the-square-root optimizer code: https://github.com/f-dangel/sirfshampoo), Comment: A long version of the ICML 2024 paper. Updated the caption of Fig 4 to emphasize the importance of the scale invariance of root-free methods

Density estimation, a central problem in machine learning, can be performed using Normalizing Flows (NFs). NFs comprise a sequence of invertible transformations, that turn a complex target distribution into a simple one, by exploiting the change of variables theorem. Neural Autoregressive Flows (NAFs) and Block Neural Autoregressive Flows (B-NAFs) are arguably the most perfomant members of the NF family. However, they suffer scalability issues and training instability due to the constraints imposed on the network structure. In this paper, we propose a novel solution to these challenges by exploiting transformers to define a new class of neural flows called Transformer Neural Autoregressive Flows (T-NAFs). T-NAFs treat each dimension of a random variable as a separate input token, using attention masking to enforce an autoregressive constraint. We take an amortization-inspired approach where the transformer outputs the parameters of an invertible transformation. The experimental results demonstrate that T-NAFs consistently match or outperform NAFs and B-NAFs across multiple datasets from the UCI benchmark. Remarkably, T-NAFs achieve these results using an order of magnitude fewer parameters than previous approaches, without composing multiple flows.