26 results on '"Xinqi Liu"'
Search Results
2. Pan-genome wide identification and analysis of the SAMS gene family in sunflowers (Helianthus annuus L.) revealed their intraspecies diversity and potential roles in abiotic stress tolerance
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Chun Zhang, Haoyu Li, Jiamin Yin, Zhibin Han, Xinqi Liu, and Yang Chen
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S-adenosylmethionine synthase ,pan-genome ,sunflowers ,abiotic stresses ,qRT-PCR ,Plant culture ,SB1-1110 - Abstract
IntroductionS-adenosylmethionine (SAM), a key molecule in plant biology, plays an essential role in stress response and growth regulation. Despite its importance, the SAM synthetase (SAMS) gene family in sunflowers (Helianthus annuus L.) remains poorly understood.MethodsIn this study, the SAMS genes were identified from the sunflower genome. Subsequently, the protein properties, gene structure, chromosomal location, cis-acting elements, collinearity, and phylogeny of the SAMS gene family were analyzed by bioinformatic methods. Finally, the expression patterns of SAMS genes in different tissues, under different hormonal treatment and abiotic stress were analyzed based on transcriptome data and qRT-PCR.ResultsThis study identified 58 SAMS genes across nine cultivated sunflower species, which were phylogenetically classified into seven distinct subgroups. Physicochemical properties and gene structure analysis showed that the SAMS genes are tightly conserved between cultivars. Collinearity analysis revealed segmental duplications as the primary driver of gene family expansion. The codon usage bias analysis suggested that natural selection substantially shapes the codon usage patterns of sunflower SAMS genes, with a bias for G/C-ending high-frequency codons, particularly encoding glycine, leucine, and arginine. Analysis of the cis-regulatory elements in promoter regions, implied their potential roles in stress responsiveness. Differential expression patterns for HanSAMS genes were observed in different tissues as well as under hormone treatment or abiotic stress conditions by analyzing RNA-seq data from previous studies and qRT-PCR data in our current study. The majority of genes demonstrated a robust response to BRA and IAA treatments in leaf tissues, with no significant expression change observed in roots, suggesting the response of HanSAMS genes to hormones is tissue-specific. Expression analyses under abiotic stresses demonstrated diverse expression profiles of HanSAMS genes, with HanSAMS5 showing significant upregulation in response to both drought and salt stresses.DiscussionThis comprehensive genomic and expression analysis provides valuable insights into the SAMS gene family in sunflowers, laying a robust foundation for future functional studies and applications in crop improvement for stress resilience.
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- 2024
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3. Social support predicted subsequent subjective well-being during the COVID-19 pandemic: a prospective study
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Yanhui Mao, Junpeng Chen, Xinqi Liu, Junhua Dang, and Helgi B. Schiöth
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Social support ,Affect balance ,Life satisfaction ,Subjective well-being ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Subjective well-being (SWB) is associated with social support in cross-sectional studies. However, it remains unclear whether and how social support predicts SWB longitudinally, especially during the COVID-19 contingency. Methods By adopting a prospective design, the current work addressed this research question in a sample of 594 participants from the U.K. The data were collected via the online platform, Prolific, at two time points (June, 2020 and August, 2021) with a 14-month interval. Descriptive analysis and a moderated mediation model were conducted to test the proposed hypotheses. Results Baseline social support was a significant predictor of subjective well-being (SWB) 14 months later, even after controlling for baseline SWB and other covariates such as personality traits. Additionally, affect balance (i.e., the affective component of SWB) fully mediated the link between baseline social support and subsequent life satisfaction (i.e., the cognitive component of SWB). Moreover, household income moderated this relationship, indicating a stronger mediation for individuals with lower monthly household income. Conclusion The present work sheds light on the underlying mechanism and boundary condition of the association between social support and different components of SWB during the COVID-19 pandemic.
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- 2024
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4. Single-cell RNA sequencing reveals that MYBL2 in malignant epithelial cells is involved in the development and progression of ovarian cancer
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Wenwen Shao, Zhiheng Lin, Zhikai Xiahou, Fu Zhao, Jue Xu, Xinqi Liu, and Pingping Cai
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ovarian cancer ,neoadjuvant chemotherapy ,omentum ,epithelial cells ,immune microenvironment ,single-cell RNA sequencing ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundOvarian carcinoma (OC) is a prevalent gynecological malignancy associated with high recurrence rates and mortality, often diagnosed at advanced stages. Despite advances in immunotherapy, immune exhaustion remains a significant challenge in achieving optimal tumor control. However, the exploration of intratumoral heterogeneity of malignant epithelial cells and the ovarian cancer tumor microenvironment is still limited, hindering our comprehensive understanding of the disease.Materials and methodsUtilizing single-cell RNA sequencing (scRNA-seq), we comprehensively investigated the cellular composition across six ovarian cancer patients with omental metastasis. Our focus centered on analysis of the malignant epithelial cells. Employing CytoTRACE and slingshot pseudotime analyses, we identified critical subpopulations and explored associated transcription factors (TFs) influencing ovarian cancer progression. Furthermore, by integrating clinical factors from a large cohort of bulk RNA sequencing data, we have established a novel prognostic model to investigate the impact of the tumor immune microenvironment on ovarian cancer patients. Furthermore, we have investigated the condition of immunological exhaustion.ResultsOur study identified a distinct and highly proliferative subgroup of malignant epithelial cells, known as C2 TOP2A+ TCs. This subgroup primarily consisted of patients who hadn’t received neoadjuvant chemotherapy. Ovarian cancer patients with elevated TOP2A expression exhibited heightened sensitivity to neoadjuvant chemotherapy (NACT). Moreover, the transcription factor MYBL2 in this subgroup played a critical role in ovarian cancer development. Additionally, we developed an independent prognostic indicator, the TOP2A TCs Risk Score (TTRS), which revealed a correlation between the High TTRS Group and unfavorable outcomes. Furthermore, immune infiltration and drug sensitivity analyses demonstrated increased responsiveness to Paclitaxel, Cisplatin, and Gemcitabine in the Low TTRS Group.ConclusionThis research deepens our understanding of malignant epithelial cells in ovarian cancer and enhances our knowledge of the ovarian cancer immune microenvironment and immune exhaustion. We have revealed the heightened susceptibility of the C2 TOP2A+ TCs subgroup to neoadjuvant chemotherapy and emphasized the role of MYBL2 within the C2 subgroup in promoting the occurrence and progression of ovarian cancer. These insights provide valuable guidance for the management of ovarian cancer treatment.
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- 2024
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5. Identification of Peptides from Edible Pleurotus eryngii Mushroom Feet and the Effect of Delaying D-Galactose-Induced Senescence of PC12 Cells Through TLR4/NF-κB/MAPK Signaling Pathways
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Fen Zhao, Ji’an Gao, Haiyan Li, Shuaishuai Huang, Shangmeng Wang, and Xinqi Liu
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Pleurotus eryngii ,edible mushroom feet peptides ,simulated digestion in vitro ,senescence ,PC12 cells ,TLR4/MAPK/NF-κB signaling pathways ,Chemical technology ,TP1-1185 - Abstract
Pleurotus eryngii mushroom has been proven to have anti-aging bioactivities. However, few studies have focused on edible Pleurotus eryngii mushroom feet peptides (PEMFPeps). In this paper, the effects of delaying the senescence of D-Galactose-induced PC12 cells were evaluated, and the mechanisms were also investigated. PEMFPeps were prepared by alkaline protease enzymolysis of edible Pleurotus eryngii mushroom feet protein (PEMFP), which mainly consisted of a molecular weight of less than 1000 Da peptides, primarily occupying 89.15% of the total. Simulated digestion in vitro of Pleurotus eryngii mushroom feet peptides (SID-PEMFPeps) was obtained in order to further evaluate the bioactivity after digestion. The peptide sequences of PEMFPeps and SID-PEMFPeps were detected by LC-MS/MS subsequently. Five new peptides of PEMFPeps and one new peptide of SID-PEMFPeps were identified. The effects of PEMFP, PEMFPeps, and SID-PEMFPeps on D-Galactose-induced senescence of PC12 cells were evaluated. PEMFP, PEMFPeps, and SID-PEMFPeps could all enhance antioxidant enzyme activities significantly, such as superoxide dismutase (SOD), glutathione peroxidase (GSH-Px), and catalase (CAT); decrease the intracellular levels of malondialdehyde (MDA) and reactive oxygen species (ROS); and inhibit the senescence-associated β-galactosidase (SA-β-gal) activity, among which SID-PEMFPeps showed the best effects. Western blotting analysis confirmed that SID-PEMFPeps significantly regulated the expressions of key proteins such as TLR4, IKKα, IκBα, p65, ERK, and JNK1/2/3, which indicated that SID-PEMFPeps could delay D-Gal-induced senescence of PC12 cells through TLR4/NF-κB/MAPK signaling pathways. This is the first time to investigate PEMFPeps and SID-PEMFPeps protective effects and mechanisms. Our study could lay a solid foundation for PEMFPeps to be used as nutritional supplementation to reduce aging-related damage. And the application of PEMFPeps could also provide optional solutions in exploring more edible protein resources for human beings.
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- 2024
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6. Preparation of Soybean Dreg-Based Biochar@TiO2 Composites and the Photocatalytic Degradation of Aflatoxin B1 Exposed to Simulated Sunlight Irradiation
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Jian Zhang, Zhiwei Ying, He Li, Xinqi Liu, Dongge Ma, and Hailong Yu
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photocatalyst ,aflatoxin B1 ,degradation ,biochar ,reduction ,simulated sunlight ,Medicine - Abstract
Aflatoxin B1 (AFB1) is a highly toxic carcinogen severely harmful to humans and animals. This study fabricated SDB-6-K-9@TiO2 composites via the hydrothermal synthesis method to reduce AFB1. The structural characterization results of the photocatalytic composites showed that TiO2 was successfully loaded onto SDB-6-K-9. The different photocatalytic degradation conditions, photocatalyst kinetics, recycling performance, and photocatalytic degradation mechanism were investigated. Photocatalysis with 6 mg of 4%SDB-6-K-9@TiO2 in a 100 μg/mL AFB1 solution presented a reduction of over 95%, exhibiting excellent performance, high stability, and reusability even after five cycles of photocatalytic experiments. Active species trapping experiments confirmed that holes (h+) played the most critical role. After structural analysis and identification of the photocatalytic degradation products, the photodegradation path and photocatalytic oxidation mechanism of 4%SDB-6-K-9@TiO2 were postulated. The results show a new way to improve TiO2’s photocatalytic performance, providing a certain theoretical basis for the effective AFB1 reduction.
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- 2024
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7. Epigenetic regulation by KDM5A mediates the effects of prenatal PM2.5 exposure on hippocampal development and synaptic integrity through the Shh signaling pathway
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Jia Huang, Chao Song, Yongping Liu, Tianliang Zhang, Tingting Wang, Xinqi Liu, and Li Yu
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Prenatal exposure ,Synaptic dysfunction ,PM2.5 ,KDM5A ,Shh ,Environmental pollution ,TD172-193.5 ,Environmental sciences ,GE1-350 - Abstract
Prenatal environmental exposure could be an essential health risk factor associated with neurodevelopmental disorders in offspring. However, the exact mechanisms underlying the impact of prenatal PM2.5 exposure on offspring cognition remain unclear. In our recent study using a PM2.5 exposed pregnant mouse model, we observed significant synaptic dysfunction in the hippocampi of the offspring. Concurrently, the epigenetic regulator of KDM5A and the Shh signaling pathway exhibited decreased activities. Significantly, changes in hippocampal KDM5A and Shh levels directly correlated with PM2.5 exposure intensity. Subsequent experiments revealed a marked reduction in the expression of Shh signaling and related synaptic proteins when KDM5A was silenced in cells. Notably, the effects of KDM5A deficiency were reversed significantly with the supplementation of a Shh activator. Furthermore, our findings indicate that Shh activation significantly attenuates PM2.5-induced synaptic impairments in hippocampal neurons. We further demonstrated that EGR1, a transcriptional inhibitor, plays a direct role in KDM5A’s regulation of the Shh pathway under conditions of PM2.5 exposure. Our results suggest that the KDM5A’s inhibitory regulation on the Shh pathway through the EGR1 gene is a crucial epigenetic mechanism underlying the synaptic dysfunction in hippocampal neurons caused by maternal PM2.5 exposure. This emphasizes the role of epigenetic regulations in neurodevelopmental disorders caused by environmental factors.
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- 2024
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8. Structure–Activity Relationships and Changes in the Inhibition of Xanthine Oxidase by Polyphenols: A Review
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Kexin Li, Yumei Wang, Wanlu Liu, Chengfeng Zhang, Yu Xi, Yanv Zhou, He Li, and Xinqi Liu
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xanthine oxidoreductase ,polyphenol ,structure–activity relationship ,processing ,digestion ,synergistic effect ,Chemical technology ,TP1-1185 - Abstract
Hyperuricemia (HUA), or elevated uric acid in the blood, has become more prevalent in recent years. Polyphenols, which are known to have good inhibitory activity on xanthine oxidoreductase (XOR), are effective in uric acid reduction. In this review, we address the structure–activity relationship of flavonoids that inhibit XOR activity from two perspectives: the key residues of XOR and the structural properties of flavonoids. Flavonoids’ inhibitory effect is enhanced by their hydroxyl, methoxy, and planar structures, whereas glycosylation dramatically reduces their activity. The flavonoid structure–activity relationship informed subsequent discussions of the changes that occur in polyphenols’ XOR inhibitory activity during their extraction, processing, gastrointestinal digestion, absorption, and interactions. Furthermore, gastrointestinal digestion and heat treatment during processing can boost the inhibition of XOR. Polyphenols with comparable structures may have a synergistic effect, and their synergy with allopurinol thus provides a promising future research direction.
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- 2024
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9. The investigation of soybean protein isolates and soybean peptides assisting Lactobacillus plantarum K25 to inhibit Escherichia coli
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Yinxiao Zhang, Chi Zhang, Jingyi Wang, Yanchao Wen, He Li, and Xinqi Liu
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Soybean protein isolates ,Soybean peptides ,Cooperation ,Lactobacillus plantarum K25 ,Escherichia coli ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Soybean protein isolates and their hydrolysates are considered as one of the most high-quality proteins among plant proteins, and current research has shown that they have potential probiotic functions. The purpose of this study was to investigate the effects of digested soybean protein isolates (dSPI) and digested soybean peptides (dPEP) on L. plantarum K25 alone and the two bacteria when co-cultured with E. coli. It showed that dSPI and dPEP promoted the growth and metabolism of L. plantarum K25, and dSPI had a better effect. Besides, dSPI and dPEP still promoted the growth and organic acid secretion of L. plantarum K25 when co-cultured with E. coli, and the dPEP treatment was more effective than dSPI. Moreover, dSPI and dPEP reduced the survival rate of E. coli when co-cultured with L. plantarum K25. These results to some extent explained the cooperation of dSPI and dPEP with L. plantarum K25 to produce acid thereby weaken the growth of E. coli.
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- 2024
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10. Screening and Identification of High-Yielding Strains of Conjugated Linoleic Acid and Optimization of Conditions for the Conversion of CLA
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Cunshe Chen, Fang Tong, Ruohao Sun, Ying Zhang, Zhihua Pang, and Xinqi Liu
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conjugated linoleic acid ,lactic acid bacteria ,screening of bacterial species ,16SrDNA ,Chemical technology ,TP1-1185 - Abstract
Conjugated linoleic acid (CLA) is a class of naturally occurring octadecadienoic acid in humans and animals and is a general term for a group of conformational and positional isomers of linoleic acid. In order to obtain the development of excellent lactic acid strains with a high production of conjugated linoleic acid, 32 strains with a possible CLA conversion ability were obtained by initial screening using UV spectrophotometry, and then the strains were re-screened by gas chromatography, and finally, the strain with the highest CLA content was obtained. The strains were optimized for cultivation by changing the amount of substrate addition, inoculum amount, and fermentation time. The results showed that the yield of the experimentally optimized strain for the conversion of conjugated linoleic acid could reach 94.68 ± 3.57 μg/mL, which was 74.4% higher than the initial yield of 54.28 ± 2.12 μg/mL of the strain. The results of this study can provide some basis for the application of conjugated linoleic acid production by Lactobacillus paracasei in the fermentation of lactic acid bacteria.
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- 2024
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11. Conjugation of Soybean Proteins 7S/11S Isolate with Glucose/Fructose in Gels through Wet-Heating Maillard Reaction
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Jalal Ud Din, He Li, You Li, Xinqi Liu, and Sam Al-Dalali
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Maillard reaction ,7S protein ,11S protein ,glucose ,fructose ,soybean ,Science ,Chemistry ,QD1-999 ,Inorganic chemistry ,QD146-197 ,General. Including alchemy ,QD1-65 - Abstract
Conjugation with glucose (G) and fructose (F) via the Maillard reaction under the wet-heating condition is a natural and non-toxic method of improving the technological functions of 7S/11S proteins in different kinds of gels. It may be used as an affordable supply of emulsifiers and an excellent encapsulating matrix for gels. This study aimed to create a glucose/fructose-conjugated 7S/11S soy protein via the Maillard reaction. The conjugation was confirmed by determining the SDS-PAGE profile and circular dichroism spectra. In addition, these conjugates were comprehensively characterized in terms of grafting degree, browning degree, sulfhydryl content, surface hydrophobicity (H0), and differential scanning calorimetry (DSC) through various reaction times (0, 24, 48, and 72 h) to evaluate their ability to be used in food gels. The functional characteristics of the 7S/11S isolate–G/F conjugate formed at 70 °C, with a high degree of glycosylation and browning, were superior to those obtained at other reaction times. The SDS-PAGE profile indicated that the conjugation between the 7S and 11S proteins and carbohydrate sources of G and F through the Maillard reaction occurred. Secondary structural results revealed that covalent interactions with G and F affected the secondary structural components of 7S/11S proteins, leading to increased random coils. When exposed to moist heating conditions, G and F have significant potential for protein alteration through the Maillard reaction. The results of this study may provide new insights into protein modification and establish the theoretical basis for the therapeutic application of both G and F conjugation with soy proteins in different food matrixes and gels.
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- 2024
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12. The Effect of N-Carbamylglutamate Supplementation during the Last Third of Gestation on the Growth and Development of Fetuses Born to Nutrient-Restricted Twin-Bearing Ewes
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Víctor H. Parraguez, Susan McCoard, Camila Sandoval, Francisca Candia, Paul Maclean, Wade Mace, Xinqi Liu, and Francisco Sales
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ovine gestation ,fetal growth ,N-carbamylglutamate ,nutrient restriction ,lamb survival ,Veterinary medicine ,SF600-1100 ,Zoology ,QL1-991 - Abstract
N-carbamylglutamate (NCG) is postulated to improve fetal growth in nutrient-restricted gestations when supplemented from day 35 to 110 of gestation, but the effects of supplementation from 100 days of gestation to birth have not been evaluated. The aim of this study was to evaluate the effect of oral NCG supplementation from 100 days of gestation (dga) to term in naturally nutrient-restricted grazing twin-bearing ewes, on the maternal body weight (BW), body condition score (BCS), placental morphology, fetal body and organ weights and blood biochemistry and antioxidant status in the ewe and fetuses. Eighteen twin-bearing ewes maintained under grazing management were randomly allocated to either a treatment group (NCG; n = 10), orally dosed once daily with 60 mg/kg of NCG from day 100 until 140 dga, or an unsupplemented control group (CON; n = 8). At 140 dga, blood gases, redox status, maternal and fetal plasma and fetal biometrics were obtained after caesarian section. The serum concentration of NCG was increased 15-fold in the NCG ewes compared to the CON. No major effects on dam or fetal body weight nor on blood biochemistry or antioxidant parameters were observed. These results indicate that NCG supplementation in mid-to-late gestation to grazing ewes was unable to rescue the negative production effects of severe natural nutritional restriction on both the dam and fetuses.
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- 2024
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13. Quality, Thermo-Rheology, and Microstructure Characteristics of Cubic Fat Substituted Pork Patties with Composite Emulsion Gel Composed of Konjac Glucomannan and Soy Protein Isolate
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Lai Wei, Yuqing Ren, Lu Huang, Xinnan Ye, He Li, Jian Li, Jinnuo Cao, and Xinqi Liu
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plant-based ,fat mimetics ,pork batter ,temperature scanning ,sensory evaluation ,Science ,Chemistry ,QD1-999 ,Inorganic chemistry ,QD146-197 ,General. Including alchemy ,QD1-65 - Abstract
Composite emulsion gel can effectively mimic animal adipose tissue. In this study, composite emulsion gels composed of soy protein isolates and konjac glucomannan (KGM) were prepared as plant-based cubic fat substitutes (CFS). The effects of CFS on the quality and structure of pork patties were investigated in terms of the proximate composition, lipid oxidation stability, technological characteristics, color, sensory attributes, texture, thermo-rheological behavior, and microstructure. CFS samples composed of various ratios of KGM were added to lean meat patties to ascertain the optimal CFS composition for its potential replacement of pork back fat in patties. The addition of CFS containing 7.0% KGM was found to decrease the hardness of the lean meat patties by 71.98% while simultaneously improving their sensory quality. The replacement of pork back fat with CFS also reduced the fat content of the patties to as little as 3.65%. Furthermore, the addition of CFS enhanced the technological characteristics, lipid oxidation stability, and surface color of the fat-replaced patties, with no significant impact on their overall acceptability. The gel network of the patties was shown to be fine and remained compact as the fat replacement ratio increased to 75%, while the texture parameters, storage modulus, and fractal dimension all increased. Quality and structure improvements may allow the composite emulsion gels to replace fat in pork patties to support a healthy diet. This study may be beneficial for the application and development of plant-based cubic fat substitutes.
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- 2024
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14. Statistical Characterization of Food-Derived α-Amylase Inhibitory Peptides: Computer Simulation and Partial Least Squares Regression Analysis
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Wenhui Li, Shangci Yang, Jiulong An, Min Wang, He Li, and Xinqi Liu
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α-amylase ,α-amylase inhibitory peptide ,molecular docking ,molecular dynamics ,partial least squares regression ,hydrogen bonds ,Organic chemistry ,QD241-441 - Abstract
α-Amylase inhibitory peptides are used to treat diabetes, but few studies have statistically characterized their interaction with α-amylase. This study performed the molecular docking of α-amylase with inhibitory peptides from published papers. The key sites, side chain chargeability, and hydrogen bond distribution characteristics were analyzed. Molecular dynamics simulated the role of key sites in complex stability. Moreover, partial least squares regression (PLSR) was used to analyze the contribution of different amino acids in the peptides to inhibition. The results showed that, for the α-amylase molecule, His201 and Gln63, with the highest interaction numbers (INs, 15, 15) and hydrogen bond values (HBVs, 11.50, 10.33), are the key sites on α-amylase, and amino acids with positively charged side chains were important for inhibitory activity. For the inhibitory peptides, Asp and Arg had the highest HBVs, and amino acids with charged side chains were more likely to form hydrogen bonds and exert inhibitory activity. In molecular dynamics simulations, peptides involving key binding sites formed more stable complexes with α-amylase than α-amylase alone, suggesting enhanced inhibitory effects. Further, PLSR results showed that amino acids close to the N-terminus of the inhibitory peptide, located in the third and fifth positions, were significantly correlated with its inhibitory activity. In conclusion, this study provides a new approach to developing and screening α-amylase inhibitors.
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- 2024
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15. TexOct: Generating Textures of 3D Models with Octree-based Diffusion.
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Jialun Liu, Chenming Wu, Xinqi Liu, Xing Liu, Jinbo Wu, Haotian Peng, Chen Zhao 0011, Haocheng Feng, Jingtuo Liu, and Errui Ding
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- 2024
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16. MBRVO: A Blur Robust Visual Odometry Based on Motion Blurred Artifact Prior.
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Jialu Zhang, Jituo Li, Jiaqi Li, Yue Sun, Xinqi Liu, Zhi Zheng, and Guodong Lu
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- 2024
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17. Fault-tolerant deep learning inference on CPU-GPU integrated edge devices with TEEs.
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Hongjian Xu, Longlong Liao, Xinqi Liu, Shuguang Chen, Jianguo Chen, Zhixuan Liang, and Yuanlong Yu
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- 2024
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18. Modeling Realistic Clothing From a Single Image Under Normal Guide.
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Xinqi Liu, Jituo Li, and Guodong Lu
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- 2024
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19. TexRO: Generating Delicate Textures of 3D Models by Recursive Optimization.
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Jinbo Wu, Xing Liu, Chenming Wu, Xiaobo Gao, Jialun Liu, Xinqi Liu, Chen Zhao 0011, Haocheng Feng, Errui Ding, and Jingdong Wang 0001
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- 2024
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20. GraphFM: A Comprehensive Benchmark for Graph Foundation Model.
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Yuhao Xu, Xinqi Liu, Keyu Duan, Yi Fang, Yu-Neng Chuang, Daochen Zha, and Qiaoyu Tan
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- 2024
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21. GVA: Reconstructing Vivid 3D Gaussian Avatars from Monocular Videos.
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Xinqi Liu, Chenming Wu, Jialun Liu, Xing Liu, Jinbo Wu, Chen Zhao 0011, Haocheng Feng, Errui Ding, and Jingdong Wang 0001
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- 2024
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22. Neural Radiance Fields Convert 2D to 3D Texture
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Zheng Lin, Chenghao Wang, Zichao Li, Zhuoyue Wang, Xinqi Liu, Yue Zhu, Zheng Lin, Chenghao Wang, Zichao Li, Zhuoyue Wang, Xinqi Liu, and Yue Zhu
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The objective of our project is to capture pictures or videos by surrounding a circle of objects, such as chairs, tables, cars, and more.[1]Utilizing advanced 3D reconstruction technology, we aim to generate 3D models of these captured objects. Post reconstruction, these 3D models can be edited through an intuitive interface, enabling users to apply different textures and make other modifications. This project has significant applications in various domains such as home decoration, vehicle customization, and beyond. For the 3D reconstruction in this project, we employed Nvidia's latest ngp-instant method, which leverages hash encoding for 3D graphics reconstruction. This technique offers a faster inference speed compared to traditional NeRF (Neural Radiance Fields). Following the 3D reconstruction, we apply volume rendering to visualize the 3D models. To facilitate user editability[2], we integrated an editable interface inspired by StyleGAN, utilizing a texture loss function to transform the 3D model into a customizable texture. This combination of technologies allows for a seamless and efficient process in creating and editing 3D models from 2D images.
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- 2024
23. Graph Neural Network Recommendation System for Football Formation
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Zeyu Wang, Yue Zhu, Zichao Li, Zhuoyue Wang, Hao Qin, Xinqi Liu, Zeyu Wang, Yue Zhu, Zichao Li, Zhuoyue Wang, Hao Qin, and Xinqi Liu
- Abstract
In usual, the flow of a football game have different phase, and change from one to another, and the coach is due to observe them, understand and solve the tasks in the game by using appropriate structural strategies.Therefore, it is a critical issues for a coach to decide what kind of structural strategies have been effective for their own team. Therefore, we propose 3 different views to help to the coach to make decisions. First of views, we formulate the passing ball path as a network (passing net- work. More specific, we utilize clustering coeffcient to determine the relations between players. It turnouts that core player will have a strong cluster ability. And our propose network focus not only on local network, but global passing relations.-Final of views, we propose a novel reinforcement learning based Graph-to- Graph framework to decide structure of team. We formulate the positions of players as a graph, and we use the current graph as input, while our deigns return award will effect the structure of team by change the positions step by step. In experiment, we simulate the result of our team versus 3 different level team.
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- 2024
24. Critical role of msgA in invasive capacity and intracellular survivability of Salmonella.
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Xinqi Liu, Chengzhi Wang, Wenhua Gai, Zhaotong Sun, Lei Fang, and Zichun Hua
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SALMONELLA enterica serovar typhimurium , *FOOD pathogens , *INTESTINAL infections , *SALMONELLA , *SALMONELLA enterica , *PROTEOMICS - Abstract
Salmonella enterica serovar Typhimurium, which is a common foodborne pathogen, causes both intestinal and systemic infections in hosts. Salmonella has a complex pathogenic mechanism that involves invasive capacity and intracellular survivability, which hampers research on virulence of Salmonella. The virulence of Salmonella is primarily studied through Salmonella pathogenicity islands (SPIs). However, there are also genes outside these SPIs that significantly impact virulence. Macrophage survival gene msgA is positioned at a region independent of the SPIs and conserved in Salmonella. However, there has been limited research on msgA to date. This study aims to investigate the virulent function of msgA to deepen our understanding of Salmonella virulence. Proteomic and RT-qPCR analyses reveal that MsgA influences multiple metabolic pathways and the expression of SPIs. The depletion of msgA led to the significantly reduced invasive capacity and intracellular survivability, and thus the decreased virulence of Salmonella. In conclusion, our study suggests that MsgA is an important regulator that mainly regulates virulence. Further research into the function of MsgA will enhance the understanding of Salmonella pathogenesis and promote the application of Salmonella for medical treatment. [ABSTRACT FROM AUTHOR]
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- 2024
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25. Evaluating the capability of soybean peptides as calcium ion carriers: a study through sequence analysis and molecular dynamics simulations.
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Jiulong An, Yumei Wang, Wenhui Li, Wanlu Liu, Xiangquan Zeng, Guoqi Liu, Xinqi Liu, and He Li
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- 2024
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26. HIV-1 p17 matrix protein enhances type I interferon responses through the p17-OLA1-STING axis.
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Lianfei Zhang, Shuai Li, Xiaoyu Xu, Chengxin Ma, Pan Zhang, Wangsheng Ji, and Xinqi Liu
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EXTRACELLULAR matrix proteins ,HIV ,HIV infections ,TYPE I interferons ,ADAPTOR proteins ,NATURAL immunity - Abstract
Stimulator of IFN genes (STING; also known as STING1) is an important adaptor protein for detecting cytosolic double-stranded DNA, which can come from HIV infection. Several HIV proteins, such as p6, Vpx and Vif, can influence STING-mediated innate immunity, but the function of p17 is still unknown. In this study, we find that HIV-1 p17, but not HIV-2 p17 or SIV p17, promotes STING signaling induced by cyclic GMP-AMP (cGAMP) treatment. Mechanistically, HIV-1 p17 binds to Obg-like ATPase 1 (OLA1) and inhibits the regulation of STING by OLA1. Here, OLA1 interacts with STING and inhibits the translocation and phosphorylation of STING upon cGAMP stimulation. Furthermore, compared with HIV-2 and SIV, the ATPase and GTPase activities of OLA1 are only promoted by HIV-1 p17. Our study shows that the p17 of HIV-1, but not HIV-2 or SIV, promotes STING-mediated innate immunity by interfering the interaction between OLA1 and STING, thus providing a new clue for specific immune activation of HIV-1. [ABSTRACT FROM AUTHOR]
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- 2024
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