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Soil amendments combined with low cadmium (Cd)-accumulating crops are commonly used for remediating Cd contamination and ensuring food safety. However, the combined effects of soil amendments and the cultivation of faba beans (Vicia faba L.)—known for their high nutritional quality and low Cd accumulation—in moderately Cd-contaminated soils remain underexplored. This study investigates the impact of a soil amendment (SA) on agronomic traits, seed nutrition, and Cd accumulation in 11 faba bean genotypes grown in acidic soil (1.3 mg·kg−1 Cd, pH 5.39). The SA treatment increased soil pH to 6.0 (an 11.31% increase) and reduced DTPA-Cd by 37.1%. Although the average yield of faba beans decreased marginally by 8.74%, it remained within the 10% national permissible limit. Notably, SA treatment reduced Cd concentration in seeds by 60% and significantly mitigated Mn and Al toxicity. Additionally, SA treatment enhanced levels of essential macronutrients (Ca, Mg, P, S) and micronutrients (Mo, Cu) while lowering Phytate (Phy)/Ca, Phy/Mg, and Phy/P ratios, thus improving mineral nutrient bioavailability. Among the genotypes, F3, F5, and F6 showed the most favorable balance of nutrient quality, and yield following SA application. This study provides valuable insights into the effectiveness of SA for nutrient fortification and Cd contamination mitigation in Cd-contaminated farmland.