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Most box C/D small nucleolar RNAs (snoRNAs) direct the formation of 2'-O-methylated nucleotides in ribosomal RNA and, apparently, other RNAs present in the nucleolar complex. Sites to be modified are selected by a long (>10-nt) antisense guide sequence in the snoRNA and a distance measurement from a box D or D' element that follows the snoRNA guide sequence. Modification of the substrate occurs in the region of complementarity, at a position five nucleotides upstream from box D/D'. Methylation can be targeted to novel sites by expressing a snoRNA with a new guide sequence. In some cases methylation impairs the growth rate of the cell, indicating that a functionally important nucleotide has been altered. With a view to harnessing snoRNA-directed methylation for functional mapping, we have developed a method for constructing libraries of snoRNA genes that, in principle, can introduce methylation point mutations into any rRNA segment of interest. The strategy and procedures are described here, and preliminary results are presented that show the feasibility of using this technology to probe a region of the yeast large subunit rRNA that includes the core of the peptidyltransferase center.

Three RNA species (5, 2, 0.15 kb) characterized by the repetitive identifier (ID) sequence, expressed constitutively, and at low abundance have been identified in rat L6 muscle cells by hybridization to cDNA pL6-411. Comigration of these three RNAs with 28, 18, and 5.8 S ribosomal RNAs (rRNAs) has suggested the possibility that pL6-411 RNAs are related to ribosomes or ribosome-like structures. Subsequent experiments showed that pL6-411-related RNAs could indeed be found in ribosome-like particles which were indistinguishable from ribosomes when separated on sucrose gradients under native (low salt, isolation of intact ribosomes) or denaturing conditions (detergent, high salt, isolation of ribosome subunits). Furthermore, we demonstrate that pL6-411-related RNAs are cytoplasmic in L6 cells, may be transcribed in nucleoli, and, based on their nucleotide sequence, have the potential of inter- and intramolecular hybridization. Expression of pL6-411 RNAs was also shown in adult as well as in fetal rat tissues after Day 14 of gestation. These above findings provide supportive evidence for the hypothesis that pL6-411 5- and 2-kb RNAs could exist in a subset of ribosomes. These ribosome-like pL6-411 particles nevertheless differ from ribosomes in that their associated RNAs have different nucleotide sequences, are of lower abundance, and are up-regulated later in development than rRNAs. We discuss our results in the context of a postulated ribosome subset containing RNAs other than rRNAs. These ribosome-like particles might be involved in the translational control of ID-positive mRNAs.

We have investigated the relation between cell size in terms of cellular ribosomal RNA (rRNA) content and proliferation of diploid human and rat embryo fibroblasts during their aging in vitro. During phase III of the proliferative lifespan in vitro, cellular rRNA content increases by a factor of nearly 3. For very different regimes of stimulation of quiescent cells, a strict correlation was observed, between the proportion of cells stimulated and cellular rRNA content, resembling a steep threshold curve. During aging in vitro, these characteristic curves exhibit an essentially parallel shift to higher values of cellular rRNA content (to higher 'thresholds'). Upon establishment as a permanent cell line, the relation between proliferation stimulation and cellular rRNA ceases to change with further subculturing. It is suggested that the essence of transformation of fibroblasts with a myc-type of oncogenes is a reduction and stabilizing of the critical rRNA content required for proliferation.

We cytologically characterized the nucleolar organizer region (NOR) on the bivalent in the yeast Saccharomyces cerevisiae. We used staining with 4'-6-diamidino-2-phenylindole (DAPI), chromomycin A3, and silver nitrate and in situ hybridization technique and utilized a video-intensified microscope system with an ultra-high-sensitive video camera. The results showed that of 16 bivalents of S. cerevisiae, the longest was a recognizable nucleolar chromosome which has an annular and synaptonemal complexless NOR in its submedian portion. The NOR was comprised of 2.65 X 10(9) D DNA which corresponded to 118 copies per haploid of rDNA repeating units. This evidence is discussed in terms of the possible participation of the annular NOR in suppressing the meiotic recombination of the rDNA gene clusters.