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This case study investigates the seasonal prevalence, morphological characteristics, molecular identity, host immune response, and environmental factors influencing Caligus clemensi infestations in farmed European seabass and flathead grey mullet at a single marine fish farm. A total of 600 fish (400 seabass, 200 mullet) were examined over one year, revealing seasonal fluctuations in parasite prevalence and intensity. C. clemensi infestation peaked in winter for seabass (75 % prevalence) and spring for grey mullet (80 % prevalence), with notable declines in summer and autumn for both species. Morphological analysis confirmed C. clemensi as the causative agent, exhibiting sexual dimorphism and characteristic features including a quadrilateral cephalothorax and disk-shaped lunules. Molecular characterization of the 18S rRNA gene corroborated the morphological identification, with phylogenetic analysis revealing a well-supported monophyletic clade for C. clemensi within the family Caligidae. Quantitative real-time PCR demonstrated significantly elevated interleukin-1β (IL-1β) expression in infected fish, indicating a robust inflammatory response. Grey mullet and seabass exhibited high IL-1β upregulation. Histopathological examination revealed severe gill tissue damage, vascular changes, and hepatic steatosis in infected fish. Water quality analysis identified several parameters exceeding permissible limits, including total suspended solids (4800-5100 mg/L), total dissolved solids (32000 mg/L), sulfates (2300 mg/L), and chlorides (18000 mg/L). These elevated levels, likely associated with nearby oil production and refining activities, created conditions conducive to parasite proliferation. The high total suspended solids might provide substrates for C. clemensi settlement and attachment, while increased dissolved ions could stress fish and reduce their parasite resistance. This multidisciplinary case study revealed complex host-parasite interactions between C. clemensi and farmed marine fish, highlighting the need for improved water quality and targeted parasite control to enhance aquaculture sustainability in the Suez Canal region., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)